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1.
Summary The use of reticulated polyurethane foam as a support material for the immobilization of methanogenic associations and its application to the anaerobic treatment of fine particulate solid wastes was investigated. The colonization of polyurethane support particles in a continuous upflow reactor fed on a mixture of acetate, propionate and butyrate, was both rapid and dense. The combination of rumen microorganisms and colonized support particles in a two-phase digester resulted in an efficient anaerobic decomposition of papermill sludge. 相似文献
2.
Dorota A. Dobrzanska Matthew T. F. Lamaudière Jessica Rollason Lauren Acton Michael Duncan Sharon Compton John Simms Gareth D. Weedall Igor Y. Morozov 《Microbial biotechnology》2020,13(3):669-682
In agriculture, antibiotics are used for the treatment and prevention of livestock disease. Antibiotics perturb the bacterial gut composition but the extent of these changes and potential consequences for animal and human health is still debated. Six calves were housed in a controlled environment. Three animals received an injection of the antibiotic florfenicol (Nuflor), and three received no treatment. Faecal samples were collected at 0, 3 and 7 days, and bacterial communities were profiled to assess the impact of a therapy on the gut microbiota. Phylogenetic analysis (16S-rDNA) established that at day 7, antibiotic-treated microbiota showed a 10-fold increase in facultative anaerobic Escherichia spp, a signature of imbalanced microbiota, dysbiosis. The antibiotic resistome showed a high background of antibiotic resistance genes, which did not significantly change in response to florfenicol. However, the maintenance of Escherichia coli plasmid-encoded quinolone, oqxB and propagation of mcr-2, and colistin resistance genes were observed and confirmed by Sanger sequencing. The microbiota of treated animals was enriched with energy harvesting bacteria, common to obese microbial communities. We propose that antibiotic treatment of healthy animals leads to unbalanced, disease- and obese-related microbiota that promotes growth of E. coli carrying resistance genes on mobile elements, potentially increasing the risk of transmission of antibiotic resistant bacteria to humans. 相似文献
3.
AB Chang NC Cox J Purcell JM Marchant PJ Lewindon GJ Cleghorn LC Ee GD Withers MK Patrick J Faoagali 《Respiratory research》2005,6(1):1-5
Background and methods
Human metapneumovirus (hMPV) is a recently discovered respiratory virus associated with bronchiolitis, pneumonia, croup and exacerbations of asthma. Since respiratory viruses are frequently detected in patients with acute exacerbations of COPD (AE-COPD) it was our aim to investigate the frequency of hMPV detection in a prospective cohort of hospitalized patients with AE-COPD compared to patients with stable COPD and to smokers without by means of quantitative real-time RT-PCR.Results
We analysed nasal lavage and induced sputum of 130 patients with AE-COPD, 65 patients with stable COPD and 34 smokers without COPD. HMPV was detected in 3/130 (2.3%) AE-COPD patients with a mean of 6.5 × 105 viral copies/ml in nasal lavage and 1.88 × 105 viral copies/ml in induced sputum. It was not found in patients with stable COPD or smokers without COPD.Conclusion
HMPV is only found in a very small number of patients with AE-COPD. However it should be considered as a further possible viral trigger of AE-COPD because asymptomatic carriage is unlikely. 相似文献4.
5.
Kevin K. A. Tetteh Lindsay B. Stewart Lynette Isabella Ochola Alfred Amambua-Ngwa Alan W. Thomas Kevin Marsh Gareth D. Weedall David J. Conway 《PloS one》2009,4(5)
Background
Endemic human pathogens are subject to strong immune selection, and interrogation of pathogen genome variation for signatures of balancing selection can identify important target antigens. Several major antigen genes in the malaria parasite Plasmodium falciparum have shown such signatures in polymorphism-versus-divergence indices (comparing with the chimpanzee parasite P. reichenowi), and in allele frequency based indices.Methodology/Principal Findings
To compare methods for prospective identification of genes under balancing selection, 26 additional genes known or predicted to encode surface-exposed proteins of the invasive blood stage merozoite were first sequenced from a panel of 14 independent P. falciparum cultured lines and P. reichenowi. Six genes at the positive extremes of one or both of the Hudson-Kreitman-Aguade (HKA) and McDonald-Kreitman (MK) indices were identified. Allele frequency based analysis was then performed on a Gambian P. falciparum population sample for these six genes and three others as controls. Tajima''s D (TjD) index was most highly positive for the msp3/6-like PF10_0348 (TjD = 1.96) as well as the positive control ama1 antigen gene (TjD = 1.22). Across the genes there was a strong correlation between population TjD values and the relative HKA indices (whether derived from the population or the panel of cultured laboratory isolates), but no correlation with the MK indices.Conclusions/Significance
Although few individual parasite genes show significant evidence of balancing selection, analysis of population genomic and comparative sequence data with the HKA and TjD indices should discriminate those that do, and thereby identify likely targets of immunity. 相似文献6.
Olfactory contribution to Fos expression during mating in inexperienced male hamsters 总被引:1,自引:0,他引:1
Male hamsters are very dependent on chemosensory cues for normal mating
behavior. We have previously reported that central, vomeronasal pathways
are intensely and selectively activated during mating or pheromonal
stimulation. The contribution of main olfactory sensory input to the
patterns of c-fos activation was investigated in this study. Sexually
inexperienced male hamsters were either made anosmic by intranasal infusion
of zinc sulfate or remained intact. Fos protein immunoreactivity was
analyzed in main olfactory and vomeronasal pathways of the zinc
sulfate-treated, anosmic animals after mating with receptive females for 45
min, and compared with Fos patterns seen in intact mating animals, some of
which have been described in a previous publication. The zinc
sulfate-treated anosmic males described here all mated when given access to
receptive females. Whether mated or unstimulated, anosmic males had little
or no Fos expression in main olfactory pathways; significantly less even
than in unstimulated intact animals. Mating did not increase Fos expression
in main olfactory pathways of intact animals over that of unstimulated
intact controls. However, Fos expression in central vomeronasal pathways
was significantly higher in mating anosmic males, as in intact males,
compared with appropriate non-mating controls. Fos expression was
significantly different between intact and zinc sulfate-treated anosmic
mating males in only one area studied. The rostral anterior medial
amygdala, known to receive a small olfactory terminal field, had
significantly lower Fos expression in zinc sulfate-treated anosmic males
that mated when compared with intact-mating animals. Thus, functional main
olfactory input to the rostral vomeronasal amygdala can be demonstrated but
does not appear to be critical for mating behavior in previously
inexperienced male hamsters with intact vomeronasal organs. Other main
olfactory input appears to have a negligible contribution to Fos-patterns
in such animals.
相似文献
7.
Intermediate filaments in nervous tissues 总被引:59,自引:30,他引:29
Intermediate filaments have been isolated from rabbit intradural spinal nerve roots by the axonal flotation method. This method was modified to avoid exposure of axons to low ionic strength medium. The purified filaments are morphologically 75-80 percent pure. The gel electrophoretogram shows four major bands migrating at 200,000, 145,000, 68,000, and 60,000 daltons, respectively. A similar preparation from rabbit brain shows four major polypeptides with mol wt of 200,000 145,000, 68,000, and 51,000 daltons. These results indicate that the neurofilament is composed of a triplet of polypepetides with mol wt of 200,000, 145,000, and 68,000 daltons. The 51,000-dalton band that appears in brain filament preparations as the major polypeptide seems to be of glial origin. The significance of the 60,000- dalton band in the nerve root filament preparation is unclear at this time. Antibodies raised against two of the triplet proteins isolated from calf brain localize by immunofluorescence to neurons in central and peripheral nerve. On the other hand, an antibody to the 51,000-dalton polypeptide gives only glial staining in the brain, and very weak peripheral nerve staining. Prolonged exposure of axons to low ionic strength medium solubilizes almost all of the triplet polypeptides, leaving behind only the 51,000- dalton component. This would indicate that the neurofilament is soluble at low ionic strength, whereas the glial filament is not. These results indicate that neurofilaments and glial filaments are composed of different polypeptides and have different solubility characteristics. 相似文献
8.
Weedall GD Clark CG Koldkjaer P Kay S Bruchhaus I Tannich E Paterson S Hall N 《Genome biology》2012,13(5):R38-13
Background
Entamoeba histolytica is a significant cause of disease worldwide. However, little is known about the genetic diversity of the parasite. We re-sequenced the genomes of ten laboratory cultured lines of the eukaryotic pathogen Entamoeba histolytica in order to develop a picture of genetic diversity across the genome.Results
The extreme nucleotide composition bias and repetitiveness of the E. histolytica genome provide a challenge for short-read mapping, yet we were able to define putative single nucleotide polymorphisms in a large portion of the genome. The results suggest a rather low level of single nucleotide diversity, although genes and gene families with putative roles in virulence are among the more polymorphic genes. We did observe large differences in coverage depth among genes, indicating differences in gene copy number between genomes. We found evidence indicating that recombination has occurred in the history of the sequenced genomes, suggesting that E. histolytica may reproduce sexually.Conclusions
E. histolytica displays a relatively low level of nucleotide diversity across its genome. However, large differences in gene family content and gene copy number are seen among the sequenced genomes. The pattern of polymorphism indicates that E. histolytica reproduces sexually, or has done so in the past, which has previously been suggested but not proven. 相似文献9.
Intraspecific DNA divergence in Drosophila: a study on parthenogenetic D. mercatorum 总被引:1,自引:0,他引:1
Drosophila mercatorum is a species that can give rise to totally homozygous
parthenogenetic strains. Using the technique of DNA-DNA hybridization, we
have assessed the overall single-copy DNA differences among three
independently derived strains that represent three independent genomes.
Among strains, the average difference between homoduplex and heteroduplex
median melting temperatures is 1.3 degrees C. This represents greater than
or equal to 1.3% base-pair mismatch. Normalized percent of reassociation
indicates further genetic differences, probably reflecting
insertion/deletion differences and/or regions of the genome that are highly
variable. This overall intraspecific genetic variation is higher than
generally is thought to exist but is consistent with growing evidence of
extensive DNA diversity within species of invertebrates. High intraspecific
DNA variation may be correlated with rapid phyletic rates of evolution.
Because of this high level of variation, the technique of DNA-DNA
hybridization may be used to study intraspecific variation in invertebrates
but is limited in its usefulness for higher systematic studies.
相似文献
10.
Carolyn GJ Moonen Kirsten GD Buurma Mouri RJ Faruque Maria G Balta Erol Liefferink Sergio Bizzarro Elena A Nicu Bruno G Loos 《Innate immunity》2020,26(5):331
In periodontitis, polymorphonuclear leucocytes (PMNs) are activated. They entrap and eliminate pathogens by releasing neutrophil extracellular traps (NETs). Abnormal NET degradation is part of a pro-inflammatory status, affecting co-morbidities such as cardiovascular disease. We aimed to investigate the ex vivo NET degradation capacity of plasma from periodontitis patients compared to controls (part 1) and to quantify NET degradation before and after periodontal therapy (part 2). Fresh NETs were obtained by stimulating blood-derived PMNs with phorbol 12-myristate 13-acetate. Plasma samples from untreated periodontitis patients and controls were incubated for 3 h onto freshly generated NETs (part 1). Similarly, for part 2, NET degradation was studied for 91 patients before and 3, 6 and 12 mo after non-surgical periodontal therapy with and without adjunctive systemic antibiotics. Finally, NET degradation was fluorospectrometrically quantified. NET degradation levels did not differ between periodontitis patients and controls, irrespective of subject-related background characteristics. NET degradation significantly increased from 65.6 ± 1.7% before periodontal treatment to 75.7 ± 1.2% at 3 mo post periodontal therapy, and this improvement was maintained at 6 and 12 mo, irrespective of systemic usage of antibiotics. Improved NET degradation after periodontitis treatment is another systemic biomarker reflecting a decreased pro-inflammatory status, which also contributes to an improved cardiovascular condition. 相似文献