Conversion of polychlorophenols by laccases with 1-hydroxybenzotriazole as a mediator

The action of purified laccase from the basidial fungi Cerrena unicolor and Trametes sp. on 2,4,6-trichlorophenol (2,4,6-TCP) and pentachlorophenol (PCP) was studied, including reactions involving I-hydroxybenzotriazole as a mediator. Oxidation of 2,4,6-TCP by laccase without the mediator yielded 2,6-dichlorobenzoquinone as a primary conversion product, whereas PCP was not oxidized. Products of further conversion of 2,4,6-TCP and PCP formed with the presence of the mediator.     

Conversion of polychlorophenols by laccases with 1-hydroxybenzotriazole as a mediator

The action of purified laccase from the basidial fungi Cerrena unicolor and Trametes sp. on 2,4,6-trichlorophenol (2,4,6-TCP) and pentachlorophenol (PCP) was studied, including reactions involving 1-hydroxybenzotriazole as a mediator. Oxidation of 2,4,6-TCP by laccase without the mediator yielded 2,6-dichlorobenzoquinone as a primary conversion product, whereas PCP was not oxidized. Products of further conversion of 2,4,6-TCP and PCP formed with the presence of the mediator.     

NMR Structure and Dynamics of the C-Terminal Domain from Human Rev1 and Its Complex with Rev1 Interacting Region of DNA Polymerase η

Rev1 is a translesion synthesis (TLS) DNA polymerase essential for DNA damage tolerance in eukaryotes. In the process of TLS stalled high-fidelity replicative DNA polymerases are temporarily replaced by specialized TLS enzymes that can bypass sites of DNA damage (lesions), thus allowing replication to continue or postreplicational gaps to be filled. Despite its limited catalytic activity, human Rev1 plays a key role in TLS by serving as a scaffold that provides an access of Y-family TLS polymerases polη, ι, and κ to their cognate DNA lesions and facilitates their subsequent exchange to polζ that extends the distorted DNA primer-template. Rev1 interaction with the other major human TLS polymerases, polη, ι, κ, and the regulatory subunit Rev7 of polζ, is mediated by Rev1 C-terminal domain (Rev1-CT). We used NMR spectroscopy to determine the spatial structure of the Rev1-CT domain (residues 1157-1251) and its complex with Rev1 interacting region (RIR) from polη (residues 524-539). The domain forms a four-helix bundle with a well-structured N-terminal β-hairpin docking against helices 1 and 2, creating a binding pocket for the two conserved Phe residues of the RIR motif that upon binding folds into an α-helix. NMR spin-relaxation and NMR relaxation dispersion measurements suggest that free Rev1-CT and Rev1-CT/polη-RIR complex exhibit μs-ms conformational dynamics encompassing the RIR binding site, which might facilitate selection of the molecular configuration optimal for binding. These results offer new insights into the control of TLS in human cells by providing a structural basis for understanding the recognition of the Rev1-CT by Y-family DNA polymerases.     

Analysis of biodiversity parameters of shrew communities of the Altai Mountains

The communities of insectivorous mammals of the Altai Mountains, each consisting of 4–9 species, are quite similar in species composition and principles of organization. The forest belt of mountains is dominated by the common shrew (Sorex araneus), with the Laxmann’s (Sorex caecutiens), lesser (Sorex minutus), and tundra (Sorex tundrensis) (rarely even-toothed (Sorex isodon)) shrews being codominants. With altitude, the dominants change and some species disappear but no significant changes in the dominance structure of the community occur. Positive correlations between abundance rates recorded in different years and on different plots indicate the stability of communities under study. Analysis of informational indices of diversity reveals four basic possible conditions of communities: a) relatively safe, b) slightly disturbed, c) disturbed, and d) high-altitude slightly evened.     

Laccase of the lignolytic fungus Trametes hirsuta: purification and characterization of the enzyme, and cloning and primary structure of the gene

The main physicochemical characteristics of the major isoform of the laccase secreted by the fungu, Trametes hirsuta 072 were studied. The enzyme belongs to the group of high redox potential laccases (E(T1) = 790 +/- 5), and it oxidizes with high efficiency various substrates of phenolic nature. The gene of this isoform was cloned, and its nucleotide sequence was determined. The length of the complete gene is 2134 bp. It comprises 11 exons and 10 introns. Analysis of the amino acid sequence of T. hirsuta 072 laccase demonstrated a high homology (to 96.9%) to the other laccases secreted by fungi of the genus Trametes.     

Reversible photocontrol of peptide helix content: adjusting thermal stability of the cis state

Cross-linking reagents based on an azobenzene core can be used to reversibly photoregulate secondary structure when introduced as intramolecular bridges in peptides and proteins. Photoisomerization of the azobenzene core in the trans to cis direction is triggered by photon absorption but isomerization from cis to trans occurs thermally as well as photochemically. The rate of the thermal process effectively determines the half-life of the cis form as well as the extent to which the trans form can be recovered. We designed and characterized a series of methanethiosulfonate (MTS)-bearing thiol-reactive azo-benzene-based cross-linkers. These cross-linkers are shown to permit photoregulation of helix content in a test peptide with half-lives for the cis conformation ranging from 11 s to 43 h at 25 degrees C. The cross-linkers described here thus broaden the range of reagents available for reversible photocontrol of peptide and protein conformation.