Molecular Characterization of E-Type Prostanoid Receptor 4 (EP4) from Ayu (Plecoglossus altivelis) and Its Functional Analysis in the Monocytes/Macrophages

Prostaglandin E2 (PGE2) plays an important role in a broad spectrum of physiological and pathological processes by interacting with E-type prostanoid receptors (EPs). EP4 is one of four EP subtypes known to mediate the immune response in mammalian monocytes/macrophages. However, the precise function and characteristics of EP4 in fish remain unclear. In this study, we characterized a novel EP4-like (PaEP4L) gene from ayu, Plecoglossus altivelis. The cDNA sequence of PaEP4L is 2781 nucleotides (nts) in length, encoding a polypeptide of 459 amino acid residues with a calculated molecular weight of 51.17 kDa. Sequence comparison and phylogenetic tree analysis showed that PaEP4L shared 76% amino acid identity with that of the Atlantic salmon (Salmo salar). PaEP4L mRNA was detected by real-time quantitative PCR (QPCR) in all tested tissues and head kidney-derived monocytes/macrophages (MO/MФ). It varied greatly in liver, spleen and MO/MФ upon Vibrio anguillarum infection. Western blot analysis revealed a significant increase of PaEP4L in cell homogenates from ayu MO/MФ upon V. anguillarum infection. Moreover, anti-PaEP4L IgG reversed the down-regulation of interleukin 1β (IL-1β) and tumor necrosis factor α (TNF-α) mRNA expression as well as phagocytosis in ayu MO/MФ caused by PGE2. There were no significant differences in the respiratory burst response between PGE2 treated and untreated cells. We further found that cAMP mediated PGE2/PaEP4L signal in ayu MO/MФ. In conclusion, our results indicate that PaEP4L mediates PGE2 effects on ayu MO/MФ function, revealing that EP4 also plays a role in the modulation of cells of the fish’s innate immune system.     

Chromosome‐level genome assembly of an important pine defoliator,Dendrolimus punctatus (Lepidoptera; Lasiocampidae)

Dendrolimus spp. are important destructive pests of conifer forests, and Dendrolimus punctatus Walker (Lepidoptera; Lasiocampidae) is the most widely distributed Dendrolimus species. During periodic outbreaks, this species is said to make “fire without smoke” because large areas of pine forest can be quickly and heavily damaged. Yet, little is known about the molecular mechanisms that underlie the unique ecological characteristics of this forest insect. Here, we combined Pacific Biosciences (PacBio) RSII single‐molecule long reads and high‐throughput chromosome conformation capture (Hi‐C) genomics‐linked reads to produce a high‐quality, chromosome‐level reference genome for D. punctatus. The final assembly was 614 Mb with contig and scaffold N50 values of 1.39 and 22.15 Mb, respectively, and 96.96% of the contigs anchored onto 30 chromosomes. Based on the prediction, this genome contained 17,593 protein‐coding genes and 56.16% repetitive sequences. Phylogenetic analyses indicated that D. punctatus diverged from the common ancestor of Hyphantria cunea, Spodoptera litura and Thaumetopoea pityocampa ~ 108.91 million years ago. Many gene families that were expanded in the D. punctatus genome were significantly enriched for the xenobiotic biodegradation system, especially the cytochrome P450 gene family. This high‐quality, chromosome‐level reference genome will be a valuable resource for understanding mechanisms of D. punctatus outbreak and host resistance adaption. Because this is the first Lasiocampidae insect genome to be sequenced, it also will serve as a reference for further comparative genomics.     

佛山城市典型森林群落土壤重金属分布、流通及枯落物富集特征

富集重金属的枯落物分解可能提高重金属暴露率,增加人体接触健康风险。为了解南方城市土壤重金属在森林生态系统中的分布及流转情况,通过调查研究了佛山市8个典型森林群落土壤及枯落物重金属含量,分析了各森林群落枯落物对不同重金属的富集效应及重金属随枯落物回归土壤流通量。结果表明：1）城市森林各土壤重金属含量在不同典型群落间差异显著（P<0.05）,差异最大为Pb、Cr、Zn,As、Cu、Ni次之,Hg、Cd最小;土层深度（0-20,20-40,40-60 cm）对重金属含量影响显著（P<0.05）,差异最大为Cd、Hg,其次为As、Cu,最小为Zn、Ni、Pb、Cr。整体上,Cd、Hg、As、Pb、Zn在0-20 cm最高,表层富集特征明显,Cr和Ni在40-60 cm最高。2）8个森林群落中阴香-白楸-醉香含笑群落（CMMC）枯落物对8种重金属的综合富集系数（TBCF,66.76）最高,其中以Cd的富集效果最突出,富集系数为44.45,且对Pb、Cu、Zn也相对富集;最低的为黧蒴锥-香椿-樟树群落（CTCC）,综合富集系数（TBCF）为8.09,仅对Cd、Cr、Cu相对富集,对其余重金属富集效应不明显。3）相关分析显示,群落重金属枯落物流通量与0-60 cm土壤重金属平均含量（Cr和Ni除外）无显著相关性。本研究对城市森林建设管理及筛选重金属富集植物及群落具有较强理论及实践意义。     

有机物料还田对双季稻田土壤有机碳及其活性组分的影响

有机物料还田是提升农田土壤有机碳、培肥土壤的重要措施。为探讨不同有机物料的还田效果,采用室外培养方法,研究了在等碳输入条件下,施用水稻秸秆、紫云英、生物有机肥、猪粪和水稻秸秆生物炭对洞庭湖双季稻区潮土有机碳和活性有机碳组分含量的影响。结果表明: 经过180 d的培养试验,与不施用有机物料相比,施用有机物料提高了土壤活性有机碳含量。生物有机肥、猪粪和水稻秸秆生物炭处理分别使土壤有机碳含量显著提升了26.1%、9.7%和30.7%,水稻秸秆和紫云英对土壤有机碳含量的提升效应在试验期间并不显著。水稻秸秆和紫云英还田更有利于土壤可溶性有机碳和微生物生物量碳的积累,猪粪更有利于土壤可溶性有机碳的积累,生物有机肥更有利于土壤微生物生物量碳和易氧化有机碳的积累,水稻秸秆生物炭则更有利于土壤微生物生物量碳和轻组有机碳的积累。与水稻秸秆还田相比,紫云英、生物有机肥、猪粪和水稻秸秆生物炭还田使土壤碳库管理指数分别提高了31.8%、111.6%、62.2%和50.7%。从土壤固碳和土壤碳库管理指数来看,生物有机肥、猪粪和水稻秸秆生物炭的还田效果优于水稻秸秆和紫云英还田。     

基于多尺度标记优化分水岭方法的油茶冠幅提取

针对尺度对地物空间结构的限制以及传统分水岭分割易产生树冠过分割等问题,选择长沙县明月村油茶基地为研究区,提出一种基于多尺度标记优化分水岭分割油茶树冠的方法。首先使用高分辨率无人机影像采集图像,分析影像特征,构建油茶分类体系,提取油茶林分布区域。其次,运用多尺度区域迭代增长方法提取树冠标记,将标记应用于多阈值尺度的分水岭变换,并结合Johnson指数选取树冠标记增长和分水岭阈值的最优尺度,实现油茶单木的准确识别。结果表明:多尺度标记优化分水岭方法在分离油茶单木时,树冠面积提取值与目视解译参考值的相对误差为9.4%;单木总体识别精度为89.4%,相对于传统的分水岭分割方法精度提高了34.8%;通过Johnson指数确定的最优迭代增长尺度为20,分水岭分割阈值尺度为85,对比不同尺度组合下的油茶冠幅提取结果,最优尺度下的油茶冠幅提取精度最高(R²=0.75)。多尺度标记优化分水岭方法能较准确地分离油茶树冠,将该方法应用于无人机影像树冠分割,可有效提高经济林调查的效率。     

Role of Complement 3 in TNF-α-Induced Mesenchymal Transition of Renal Tubular Epithelial Cells In Vitro

Injured renal tubular epithelial cells (RTECs) have been recently thought to directly contribute to the accumulation of myofibroblasts in renal tubulointerstitial fibrosis through a process of epithelial to mesenchymal transition (EMT). However, the factors inducing RTECs to undergo EMT and the underlying mechanisms need to be further elucidated. This study aimed to determine the EMT-inducing activity of proinflammatory cytokine TNF-α and the role for complement 3 (C3) in this activity in an in vitro model of human RTECs (HK-2 cells). Wild type HK-2 cells were treated with TNF-α, IFN-γ or C3a; C3 siRNA- or control siRNA-carrying HK-2 cells were treated with TNF-α. Changes in the cell morphology and phenotype were assessed by microscopy, RT-PCR, western blotting, and immunostaining. TNF-α effectively induced HK-2 cells to express C3 and to transform into morphologically myofibroblast-like cells that lost E-cadherin (a classical epithelial cell marker) expression but acquired alpha-smooth muscle actin (α-SMA, a classical myofibroblast differentiation marker) expression. C3 siRNA robustly attenuated all the morphologic and phenotypic changes induced by TNF-α but the control siRNA showed no effect. Our preliminary observations suggest that TNF-α may induce EMT in RTECs through inducing C3 expression.     

Novel 2′-Deoxy Pyrazine C-Nucleosides Synthesized VIA Palladium-Catalyzed Cross-Couplings

Abstract

The palladium-catalyzed cross-couplings of 2-chloro-3,5-diamino-6-iodopyrazine (1a) and methyl 3-amino-6-iodopyrazine-2-carboxylate (1b) with 1,4-anhydro-3,5-O-bis[(tert-butyl)dimethylsilyl]-2-deoxy-D-erythro-pent-1-enitol (2) followed by desilylation and stereospecific reduction of the 2′-deoxy-3′-keto adduct leads to the formation of 2-chloro-6-(2-deoxy-ß-D-ribofuranosyl)-3,5-diaminopyrazine (4a) and methyl 3-amino-6-(2-deoxy-ß-D-ribofuranosyl)pyrazine-2-carboxylate (4b) in 58% yield and 21% yield, respectively. These are the first syntheses of the heretofore unknown 2′-deoxy pyrazine C-nucleosides and demonstrate the utility of a convergent approach for the synthesis of pyrazine C-nucleosides.     

The association between CD14 gene C-260T polymorphism and coronary heart disease risk: a meta-analysis

Monocyte differentiation antigen CD14 is considered an important cell-activating mediator of inflammatory responses that may result in atherosclerosis, coronary heart disease (CHD), thrombus formation, and myocardial infarction (MI). A common C-260T polymorphism in the promoter of the CD14 gene, the trans-membrane receptor of lipopolysaccharides, has been inconsistently associated with CHD. To investigate this inconsistency, we performed a meta-analysis of 28 studies involving a total of 13,335 CHD cases and 7,979 controls for C-260T of the CD14 gene to evaluate the effect of CD14 on genetic susceptibility for CHD. An overall random effects odds ratio of 1.24 (95 % CI: 1.12–1.36, P < 10^?5) was found for T allele. Significant results were also observed using dominant (OR = 1.34, 95 % CI: 1.17–1.54, P < 10^?4) or recessive genetic model (OR = 1.25, 95 % CI: 1.10–1.41, P = 0.0004). There was strong evidence of heterogeneity (P < 10^?5), which largely disappeared after stratification by ethnicity. After stratified by ethnicity, significant results were found in East Asians; whereas no significant associations were found among Caucasians and other ethnic populations in all genetic models. In the stratified analysis according to sample size, CHD endpoints, and HWE status, significantly increased risks for the polymorphism were found in all genetic models. In conclusion, our results indicate that the CD14 C-260T polymorphism is a risk factor of CHD, especially in East Asians. However, additional very large-scale studies are warranted to confirm our results.