Damage to living trees contributes to almost half of the biomass losses in tropical forests

Accurate estimates of forest biomass stocks and fluxes are needed to quantify global carbon budgets and assess the response of forests to climate change. However, most forest inventories consider tree mortality as the only aboveground biomass (AGB) loss without accounting for losses via damage to living trees: branchfall, trunk breakage, and wood decay. Here, we use ~151,000 annual records of tree survival and structural completeness to compare AGB loss via damage to living trees to total AGB loss (mortality + damage) in seven tropical forests widely distributed across environmental conditions. We find that 42% (3.62 Mg ha⁻¹ year⁻¹; 95% confidence interval [CI] 2.36–5.25) of total AGB loss (8.72 Mg ha⁻¹ year⁻¹; CI 5.57–12.86) is due to damage to living trees. Total AGB loss was highly variable among forests, but these differences were mainly caused by site variability in damage-related AGB losses rather than by mortality-related AGB losses. We show that conventional forest inventories overestimate stand-level AGB stocks by 4% (1%–17% range across forests) because assume structurally complete trees, underestimate total AGB loss by 29% (6%–57% range across forests) due to overlooked damage-related AGB losses, and overestimate AGB loss via mortality by 22% (7%–80% range across forests) because of the assumption that trees are undamaged before dying. Our results indicate that forest carbon fluxes are higher than previously thought. Damage on living trees is an underappreciated component of the forest carbon cycle that is likely to become even more important as the frequency and severity of forest disturbances increase.     

HGF and c-Met Interaction Promotes Migration in Human Chondrosarcoma Cells

Chondrosarcoma is a type of highly malignant tumor with a potent capacity for local invasion and causing distant metastasis. Chondrosarcoma shows a predilection for metastasis to the lungs. Hepatocyte growth factor (HGF) has been demonstrated to stimulate cancer proliferation, migration, and metastasis. However, the effect of HGF on migration activity of human chondrosarcoma cells is not well known. Here, we found that human chondrosarcoma tissues demonstrated significant expression of HGF, which was higher than that in normal cartilage. We also found that HGF increased the migration and expression of matrix metalloproteinase (MMP)-2 in human chondrosarcoma cells. c-Met inhibitor and siRNA reduced HGF-increased cell migration and MMP-2 expression. HGF treatment resulted in activation of the phosphatidylinositol 3′-kinase (PI3K)/Akt/PKCδ/NF-κB pathway, and HGF-induced expression of MMP-2 and cell migration was inhibited by specific inhibitors or siRNA-knockdown of PI3K, Akt, PKCδ, and NF-κB cascades. Taken together, our results indicated that HGF enhances migration of chondrosarcoma cells by increasing MMP-2 expression through the c-Met receptor/PI3K/Akt/PKCδ/NF-κB signal transduction pathway.     

Expression Profiles of Branchial FXYD Proteins in the Brackish Medaka Oryzias dancena: A Potential Saltwater Fish Model for Studies of Osmoregulation

FXYD proteins are novel regulators of Na⁺-K⁺-ATPase (NKA). In fish subjected to salinity challenges, NKA activity in osmoregulatory organs (e.g., gills) is a primary driving force for the many ion transport systems that act in concert to maintain a stable internal environment. Although teleostean FXYD proteins have been identified and investigated, previous studies focused on only a limited group of species. The purposes of the present study were to establish the brackish medaka (Oryzias dancena) as a potential saltwater fish model for osmoregulatory studies and to investigate the diversity of teleostean FXYD expression profiles by comparing two closely related euryhaline model teleosts, brackish medaka and Japanese medaka (O. latipes), upon exposure to salinity changes. Seven members of the FXYD protein family were identified in each medaka species, and the expression of most branchial fxyd genes was salinity-dependent. Among the cloned genes, fxyd11 was expressed specifically in the gills and at a significantly higher level than the other fxyd genes. In the brackish medaka, branchial fxyd11 expression was localized to the NKA-immunoreactive cells in gill epithelia. Furthermore, the FXYD11 protein interacted with the NKA α-subunit and was expressed at a higher level in freshwater-acclimated individuals relative to fish in other salinity groups. The protein sequences and tissue distributions of the FXYD proteins were very similar between the two medaka species, but different expression profiles were observed upon salinity challenge for most branchial fxyd genes. Salinity changes produced different effects on the FXYD11 and NKA α-subunit expression patterns in the gills of the brackish medaka. To our knowledge, this report is the first to focus on FXYD expression in the gills of closely related euryhaline teleosts. Given the advantages conferred by the well-developed Japanese medaka system, we propose the brackish medaka as a saltwater fish model for osmoregulatory studies.     

浮毛茛的组织培养与植株再生

1植物名称浮毛茛(Ranunculus natans C.A.Mey.),又称水毛。2材料类别基生茎。3培养条件愈伤组织诱导培养基:(1)MS 6-BA 1mg·L~(-1)(单位下同);(2)MS 6-BA 1 IBA 0.6:(3)MS 6-BA 1 IAA 0.6:(4)MS 6-BA 1 2,4-D 0.6;(5)MS 6-BA 1 NAA 0.6。愈伤组织分化培养基:(6)1/2MS 6-BA 0.2 NAA 0.1;(7)1/2MS 6-     

Effect of the interaction between light and touch stimuli on inducing curling seminal roots in rice seedlings

Root development is sensitive to environmental stimuli. We have recently reported that the light signal could promote the helical growth of seminal roots and drive the wavy root morphology in rice (Oryza sativa L.) young seedlings. The light-stimulated wavy roots were mostly performed in indica-type rice varieties (e.g., Taichung Native 1; TCN1) but not in japonica rice (e.g., Tainung 67; TNG67). Here, we demonstrated that the light-driven circumutation trajectory of TCN1 seminal roots could be changed if the seedling roots were grown in the medium containing high concentration of Phytagel. The data showed the root morphology would be modulated from wavy to curling when the Phytagel concentration was increased to 2%. However, the touch-stimulated curling root phenotype could not be performed in dark. In addition, the touch-induced curling roots were not appeared in the TNG67 rice cultivar. Although touch stimuli could not induce wavy/curling root phenotype in dark, it could modify the light-promoted helical growth to conduct curling roots in TCN1 rice seedlings. Thus, it was suggested that there is a crosstalk mechanism between touching-induced root curling and light-stimulated root waving.Key words: curling root, light stimuli, Oryza sativa, seminal root, touch stimuli, wavy rootRoot development and architecture could be changed to adapt the environmental conditions. Although root is usually grown in soil, it still exposes to light penetrated through soil particles. Some studies also indicated light can be conducted from shoots to roots through vascular bundle tissues.^1,2 Recently, we have reported that the light-exposed seminal roots of indica-type rice, i.e., Taichung Native 1 (TCN1), presented the wavy morphology.³ The light-induced wavy root was not performed in japonica rice such as Tainung 67 (TNG67). Moreover, the circumutation of TCN1 seminal root tip were observed with time-lapse photography during root growth. According to the investigations among various rice varieties, it has been found that the root morphology was determined by helix period and circumnutation trajectory of root tip moving behavior.³ For example, the root tip movement of light-exposed TCN1 seedlings was a regular circumntation; therefore, the roots performed a regular wavy phenotype. In the other rice variety (i.e., Taichung Sen 17) with the curling root morphology, the circumnutation trajectory of seminal roots was significantly irregular compared with that was observed in TCN1. In the previous report, we showed that the auxin and oxylipins (i.e., ketol) played important roles to trigger the light-induced wavy roots.³The wavy root phenotype has also been observed in Arabidopsis when it was cultured on an agar-plate that was inclined at an angle of less than 90°.⁴ Based on the studies in Arabidopsis mutants, the performance of obstacle-touching induced wavy phenotype in seedlings roots was related to the functions of auxin efflux/influx carriers and some proteins involved in cell expansion.^4–6 Moreover, ethylene also played a role to modulate the wavy root morphology.⁷In our previous experiments for studying the light-induced wavy roots, rice seedlings were cultured in water. In order to reveal the effect of interaction between light signal pathway and touch stimuli on rice seminal root growth, the sterilized rice seeds of TCN1 and TNG67 cultivars were germinated at 30°C in dark for 2 d and moved to continuous white light conditions (90 µmol m⁻² s⁻¹) to grow in vertically oriented square dishes containing 1.5% and 2% (w/v) Phytagel (Sigma, St. Louis, MO), respectively. The Phytagel percentage of the medium that we used here were higher than that was used for plant tissue culture in usual. After 3 d culture, the seminal roots of seedlings on 1.5% Phytagel performed wavy phenotype that was similar to the wavy roots observed in water-cultured seedlings under light conditions. Furthermore, the seminal roots in 2% Phytagel was grown to be a curling type (Fig. 1). On the other hand, no wavy or curling root morphology was presented in dark conditions either in 1.5% or 2% Phytagel-containing medium (Fig. 1). These results showed that root-Phytagel interaction could not directly induce the significant wavy or curling root morphology under dark growth conditions, but it could modify the light-stimulated helical growth and conduct the curling root morphology.Open in a separate windowFigure 1Effect of the interaction between light signals and touch stimuli on seminal root growth in rice seedlings. The TCN1 rice seeds were germinated in dark for 2 d and then germinated seeds were transferred to 1.5% and 2% Phytagel-containing plates for continuously growing. The root morphology was investigated after 3 d of Phytagelculture under light and dark conditions.Photomorphology of the seminal roots was diverse among rice varieties. Our previous data showed light-induced wavy roots could not be conducted in TNG67 rice cultivar.³ Here, we also observed the root growth of TNG67 rice seedlings on Phytagel-containing plates, and the results showed the straight root morphology in both light and dark conditions (data not shown). These results indicated that the phenomena of touch-stimulated curling roots were also rice variety-dependent.Based on above mentioned results, it was suggested that mechanisms of root-gel interaction for conducting curling phenotype was highly correlated with the transduction pathway of light signal to induce root waving. This hypothesis was supported by the observation on physiological mechanisms of light-induced wavy roots in rice plants and the obstacle-touching stimulated wavy roots in Arabidopsis. Our previous observation in rice plants suggested that auxin polar transport was essential for light-induced root waving and fatty acid oxygenation was involved to the mechanism of root waving in light.³ In Arabidopsis, auxin polar transport was also indicated to play a role in obstacle-touching stimulated root waving.^8,9 In addition, wavy roots of Arabidopsis could be induced by several products of fatty acid oxygenation, i.e., ketols, ketones and hydroxides.¹⁰In conclusion, both light signal and touch stimuli were the important environmental cues to guide root growth and determine root morphology. Touch stimuli were able to modify the trajectory of light-induced root waving. Phenomena of both light-induced wavy roots and touch-stimulated curling roots were rice variety-dependent. Furthermore, it was suggested that touch-induced signaling may be associated with the light-induced signal pathway to conduct curling phenotype in seminal roots of rice seedlings.     

A variant of fibroblast growth factor receptor 2 (Fgfr2) regulates left-right asymmetry in zebrafish

Many organs in vertebrates are left-right asymmetrical located. For example, liver is at the right side and stomach is at the left side in human. Fibroblast growth factor (Fgf) signaling is important for left-right asymmetry. To investigate the roles of Fgfr2 signaling in zebrafish left-right asymmetry, we used splicing blocking morpholinos to specifically block the splicing of fgfr2b and fgfr2c variants, respectively. We found that the relative position of the liver and the pancreas were disrupted in fgfr2c morphants. Furthermore, the left-right asymmetry of the heart became random. Expression pattern of the laterality controlling genes, spaw and pitx2c, also became random in the morphants. Furthermore, lefty1 was not expressed in the posterior notochord, indicating that the molecular midline barrier had been disrupted. It was also not expressed in the brain diencephalon. Kupffer's vesicle (KV) size became smaller in fgfr2c morphants. Furthermore, KV cilia were shorter in fgfr2c morphants. We conclude that the fgfr2c isoform plays an important role in the left-right asymmetry during zebrafish development.     

Inhibition of intestinal glucose uptake by aporphines and secoaporphines

The effects of aporphines and secoaporphines on glucose uptake by isolated intestinal brush-border membrane vesicles (BBMV) or basolateral membrane vesicles (BLMV) and glucose absorption during in situ intestinal perfusion were studied. Of the tested compounds, N-allylsecoboldine was the most potent glucose uptake inhibitor, with IC50 values of 159 microM and 121 microM, respectively, for uptake by BBMV and BLMV. While thaliporphine competitively inhibited glucose uptake by both membrane preparations, inhibition by N-allylsecoboldine was competitive using BBMV and noncompetitive using BLMV. In addition, N-allylsecoboldine significantly reduced both glucose absorption during in situ intestinal perfusion and blood glucose levels in the oral glucose tolerance test. The results demonstrate that levels of both aporphines and secoaporphines achievable by oral administration have an inhibitory effect on intestinal glucose uptake and suggest that the hypoglycemic effects of these compounds merit attention.     

miRNome traits analysis on endothelial lineage cells discloses biomarker potential circulating microRNAs which affect progenitor activities

Background

Endothelial progenitor cells (EPCs) play a fundamental role in not only blood vessel development but also post-natal vascular repair. Currently EPCs are defined as early and late EPCs based on their biological properties and their time of appearance during in vitro culture. Both EPC types assist angiogenesis and have been linked to ischemia-related disorders, including coronary artery disease (CAD).

Results

We found late EPCs are more mobile than early EPCs and matured endothelial cells (ECs). To pinpoint the mechanism, microRNA profiles of early EPCs late EPCs, and ECs were deciphered by small RNA sequencing. Obtained signatures made up of both novel and known microRNAs, in which anti-angiogenic microRNAs such as miR-221 and miR-222 are more abundant in matured ECs than in late EPCs. Overexpression of miR-221 and miR-222 resulted in the reduction of genes involved in hypoxia response, metabolism, TGF-beta signalling, and cell motion. Not only hamper late EPC activities in vitro, both microRNAs (especially miR-222) also hindered in vivo vasculogenesis in a zebrafish model. Reporter assays showed that miR-222, but not miR-221, targets the angiogenic factor ETS1. In contrast, PIK3R1 is the target of miR-221, but not miR-222 in late EPCs. Clinically, both miR-221-PIK3R1 and miR-222-ETS1 pairs are deregulated in late EPCs of CAD patients.

Conclusions

Our results illustrate EPCs and ECs exploit unique miRNA modalities to regulate angiogenic features, and explain why late EPC levels and activities are reduced in CAD patients. These data will further help to develop new plasma biomarkers and therapeutic approaches for ischemia-related diseases or tumor angiogenesis.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-802) contains supplementary material, which is available to authorized users.     

Aggressive organ penetration and high vector transmissibility of epidemic dengue virus-2 Cosmopolitan genotype in a transmission mouse model

Dengue virus (DENV) causes dengue fever and severe hemorrhagic fever in humans and is primarily transmitted by Aedes aegypti and A. albopictus mosquitoes. The incidence of DENV infection has been gradually increasing in recent years due to global urbanization and international travel. Understanding the virulence determinants in host and vector transmissibility of emerging epidemic DENV will be critical to combat potential outbreaks. The DENV serotype 2 (DENV-2), which caused a widespread outbreak in Taiwan in 2015 (TW2015), is of the Cosmopolitan genotype and is phylogenetically related to the virus strain linked to another large outbreak in Indonesia in 2015. We found that the TW2015 virus was highly virulent in type I and type II interferon-deficient mice, with robust replication in spleen, lung, and intestine. The TW2015 virus also had high transmissibility to Aedes mosquitoes and could be effectively spread in a continuous mosquitoes-mouse-mosquitoes-mouse transmission cycle. By making 16681-based mutants carrying different segments of the TW2015 virus, we identified the structural pre-membrane (prM) and envelope (E) genes as key virulence determinants in the host, with involvement in the high transmissibility of the TW2015 virus in mosquitoes. The transmission mouse model will make a useful platform for evaluation of DENV with high epidemic potential and development of new strategies against dengue outbreaks.