不同育秧方式和插植密度下晚籼稻群体动态结构的研究

不同育秧方式和插植密度下晚籼稻群体动态结构存在差异。旱育秧群体分蘖速度快,分蘖能力强。稀植可促进个体分蘖多发、有效穗数增多,但旱育稀植并无分蘖早发的优势。旱育稀植使主茎基部叶片变短而上部叶片变长,生育后期叶面积消长平稳,地上部干物质积累较多。旱育秧、稀植都使主茎叶总数增多,全生育期延长。     

椎体静脉稀疏区注入骨水泥对PVP术中骨水泥渗漏的影响

目的:探讨椎体静脉稀疏区注入骨水泥对骨质疏松椎体压缩性骨折患者行经皮穿刺椎体成形术(percutaneous vertebroplasty,PVP)术中骨水泥渗漏的影响。方法:选择西安交通大学第二附属医院2014年1月至2018年6月收治的61例骨质疏松椎体压缩性骨折患者,根据骨水泥注入区域的不同,将所有患者分为A组(30例)及B组(31例),A组骨水泥注入区域为椎体静脉密集区(椎体中1/3平面处),B组骨水泥注入区域为椎体静脉稀疏区(椎体上1/3及下1/3平面处),对比两组的骨水泥渗漏率,术前、术后6个月时的视觉模拟评分(Visual analogue scale,VAS),治疗中的骨水泥用量、椎体高度恢复率及cobb角恢复度数。结果:B组的骨水泥渗漏率及骨水泥用量均明显低于A组(P0.05)。两组的VAS评分、椎体高度恢复率、cobb角恢复情况对比差异无统计学意义(P0.05)。结论:与椎体静脉密集区相比,在椎体静脉稀疏区注入骨水泥可显著降低骨质疏松椎体压缩性骨折患者PVP术中骨水泥渗漏率,椎体静脉稀疏区可作为PVP术中骨水泥注射的一个相对安全区域。     

Protein structure prediction assisted with sparse NMR data in CASP13

CASP13 has investigated the impact of sparse NMR data on the accuracy of protein structure prediction. NOESY and ¹⁵N-¹H residual dipolar coupling data, typical of that obtained for ¹⁵N,¹³C-enriched, perdeuterated proteins up to about 40 kDa, were simulated for 11 CASP13 targets ranging in size from 80 to 326 residues. For several targets, two prediction groups generated models that are more accurate than those produced using baseline methods. Real NMR data collected for a de novo designed protein were also provided to predictors, including one data set in which only backbone resonance assignments were available. Some NMR-assisted prediction groups also did very well with these data. CASP13 also assessed whether incorporation of sparse NMR data improves the accuracy of protein structure prediction relative to nonassisted regular methods. In most cases, incorporation of sparse, noisy NMR data results in models with higher accuracy. The best NMR-assisted models were also compared with the best regular predictions of any CASP13 group for the same target. For six of 13 targets, the most accurate model provided by any NMR-assisted prediction group was more accurate than the most accurate model provided by any regular prediction group; however, for the remaining seven targets, one or more regular prediction method provided a more accurate model than even the best NMR-assisted model. These results suggest a novel approach for protein structure determination, in which advanced prediction methods are first used to generate structural models, and sparse NMR data is then used to validate and/or refine these models.     

Photosynthetic Assimilation of Sun versus Shade Norway Spruce [Picea abies (L.) Karst] Needles Under the Long-Term Impact of Elevated CO2 Concentration

The long-term impact of elevated concentration of CO₂ on assimilation activity of sun-exposed (E) versus shaded (S) foliage was investigated in a Norway spruce stand [Picea abies (L.) Karst, age 14 years] after three years of cultivation in two domes with adjustable windows (DAW). One DAW was supplied with ambient air [AC, ca. 350 µmol(CO₂) mol^–1) and the second with elevated CO₂ concentration [EC = AC plus 350 µmol(CO₂) mol^–1]. The pronounced vertical profile of the photosynthetic photon flux density (PPFD) led to the typical differentiation of the photosynthetic apparatus between the shaded and sun needles. Namely, photon-saturated values of maximal net photosynthetic rate (P _Nmax) and apparent quantum yield () were significantly higher/lower for E-needles as compared with the S-ones. The prolonged exposure to EC was responsible for the apparent assimilatory activity stimulation observed mainly in deeply shaded needles. The degree of this stimulation decreases in the order: S-needles dense part > S-needles sparse part > E-needles dense part > E-needles sparse part. In exposed needles some signals on a manifestation of the acclimation depression of the photosynthetic activity were found. The long-term effect of EC was responsible for the decrease of nitrogen content of needles and for its smoother gradient between E- and S-needles. The obtained results indicate that the E- and S-foliage respond differently to the long-term impact of EC.     

Sparse networks of directly coupled,polymorphic, and functional side chains in allosteric proteins

Recent studies have highlighted the role of coupled side‐chain fluctuations alone in the allosteric behavior of proteins. Moreover, examination of X‐ray crystallography data has recently revealed new information about the prevalence of alternate side‐chain conformations (conformational polymorphism), and attempts have been made to uncover the hidden alternate conformations from X‐ray data. Hence, new computational approaches are required that consider the polymorphic nature of the side chains, and incorporate the effects of this phenomenon in the study of information transmission and functional interactions of residues in a molecule. These studies can provide a more accurate understanding of the allosteric behavior. In this article, we first present a novel approach to generate an ensemble of conformations and an efficient computational method to extract direct couplings of side chains in allosteric proteins, and provide sparse network representations of the couplings. We take the side‐chain conformational polymorphism into account, and show that by studying the intrinsic dynamics of an inactive structure, we are able to construct a network of functionally crucial residues. Second, we show that the proposed method is capable of providing a magnified view of the coupled and conformationally polymorphic residues. This model reveals couplings between the alternate conformations of a coupled residue pair. To the best of our knowledge, this is the first computational method for extracting networks of side chains' alternate conformations. Such networks help in providing a detailed image of side‐chain dynamics in functionally important and conformationally polymorphic sites, such as binding and/or allosteric sites. Proteins 2015; 83:497–516. © 2014 Wiley Periodicals, Inc.     

黄土高原农牧交错带稀疏自然植被生态系统的地表能量特征

基于2011-2012年黄土高原农牧交错带稀疏自然植被生态系统的地表能量通量以及气象数据,对该地区能量平衡各分量(净辐射、感热、潜热和土壤热通量)以及波文比进行日、季节动态的特征分析,研究了潜热通量和感热通量对不同强度降雨事件响应程度的差异,并分析了潜热通量和感热通量的主控因子.结果表明:该地区净辐射、感热、潜热和土壤热通量的日、季节动态曲线均为单峰型曲线,净辐射、感热通量、潜热通量和土壤热通量的年平均值分别为78.19、33.32、24.91和2.65 W·m-2.在全年能量收支平衡中,感热通量占净辐射的43％,潜热通量占32％,土壤热通量占3％,表明对于黄土高原农牧交错带自然稀疏灌木生态系统,全年能量主要以感热的形式交换.生长季感热和潜热占净辐射的比例相同(36％);而在非生长季,感热占主导,占净辐射的比例高达54％.潜热通量在强、弱降雨事件发生后明显升高,感热通量则明显下降.潜热通量与净辐射、水汽压差及植被参数均显著相关,感热通量与净辐射及空气温度梯度显著相关.     

基于GIS的重庆市秀山县白背飞虱空间格局分析

根据2003-2009年重庆市秀山县白背飞虱迁入前期的田间调查资料,应用地理信息系统(GIS)结合传统空间分布分析方法,研究了该县白背飞虱空间分布格局及其动态.结果表明:2003-2009年的白背飞虱种群在全县范围呈现明显的聚集分布格局;反向距离插值图显示,不同年度聚集中心和聚集程度是变化的.总的分布格局是,秀山县中部平坝地区的官桥、官庄、平凯镇发生较重,7年的调查数据中有4年的聚集中心位于此;而周边三沟两岔地区发生相对较轻,只有2007年聚集中心位于南部,2008年的聚集中心位于东部,2009年聚集中心位于北部和西部.     

稀疏植被区空气动力学粗糙度特征及遥感反演

应用中国西北半干旱区定西试验站2005年观测资料,估算了典型的稀疏农作物区空气动力学粗糙度,结合空气动力学模型分析了稀疏植被区空气动力学粗糙度的时间变化及其与风速、植株密度的关系,并得出空气动力学粗糙度的参数化方案;结合卫星遥感得到的植被叶面积指数资料,模拟了区域空气动力学粗糙度,得出:(1)空气动力学粗糙度的时间变化与风速变化规律有相反的特点;在稀疏植被区,粗糙单元分布密度对流场有一定影响,随粗糙单元密度的增加,空气动力学粗糙度将逐渐增大。(2)植株高度超过0.2m时,植被高度和植株密度、叶面积指数对空气动力学粗糙度的影响较大,当植株高度低于0.2m时,风速的影响较大。(3)结合遥感反演的叶面积指数,采用空气动力学粗糙度和叶面积指数及风速的关系,反演了空气动力学粗糙度,反演结果空间分布和误差都反映了实际空气动力学粗糙度的特征,证明空气动力学粗糙度遥感参数化比较成功。     

Sparse sufficient dimension reduction

Existing sufficient dimension reduction methods suffer fromthe fact that each dimension reduction component is a linearcombination of all the original predictors, so that it is difficultto interpret the resulting estimates. We propose a unified estimationstrategy, which combines a regression-type formulation of sufficientdimension reduction methods and shrinkage estimation, to producesparse and accurate solutions. The method can be applied tomost existing sufficient dimension reduction methods such assliced inverse regression, sliced average variance estimationand principal Hessian directions. We demonstrate the effectivenessof the proposed method by both simulations and real data analysis.     

Role of invasive <Emphasis Type="Italic">Melilotus officinalis</Emphasis> in two native plant communities

This study examines the impact of the exotic nitrogen-fixing legume Melilotus officinalis (L.) Lam. on native and exotic species cover in two Great Plains ecosystems in Badlands National Park, South Dakota. Melilotus is still widely planted and its effects on native ecosystems are not well studied. Melilotus could have direct effects on native plants, such as through competition or facilitation. Alternatively, Melilotus may have indirect effects on natives, e.g., by favoring exotic species which in turn have a negative effect on native species. This study examined these interactions across a 4-year period in two contrasting vegetation types: Badlands sparse vegetation and western wheatgrass (Pascopyrum smithii) mixed-grass prairie. Structural equation models were used to analyze the pathways through which Melilotus, native species, and other exotic species interact over a series of 2-year time steps. Melilotus can affect native and exotic species both in the current year and in the years after its death (a lag effect). A lag effect is possible because the death of a Melilotus plant can leave an open, potentially nitrogen-enriched site on the landscape. The results showed that the relationship between Melilotus and native and exotic species varied depending on the habitat and the year. In Badlands sparse vegetation, there was a consistent, strong, and positive relationship between Melilotus cover and native and exotic species cover suggesting that Melilotus is acting as a nurse plant and facilitating the growth of other species. In contrast, in western wheatgrass prairie, Melilotus was acting as a weak competitor and had no consistent effect on other species. In both habitats, there was little evidence for a direct lag effect of Melilotus on other species. Together, these results suggest both facilitative and competitive roles for Melilotus, depending on the vegetation type it invades.