Notes on compositional diversity

This paper tries to show some ways and means of simple (binary) modelling, whereby diversity can be interconnected with other attributes of a community. A new type of scaling (called characteristic scaling) is introduced for further use.     

棘冠海星暴发及其对珊瑚礁的生态影响研究进展

棘冠海星的反复暴发是导致印度-太平洋区域珊瑚礁生态系统退化的最主要原因之一。然而，我国对棘冠海星的研究非常有限。本文综述了国内外关于棘冠海星及其暴发的生态影响和应对策略的研究进展，得出以下主要结论：1）雌性棘冠海星个体每年产卵数量高达50万-2亿个，环境因素变化只要导致幼虫和幼体存活率的轻微提高，成体就将得到大量补充；2）棘冠海星暴发的阈值为1000-1500个/km²，暴发周期为10-27 a，每次暴发持续1-10 a，最终可能以"种群集体感染疾病而崩溃"结束；3）棘冠海星暴发对印度洋及太平洋东部和北部珊瑚礁的破坏性非常小，却直接导致太平洋的西部和南部珊瑚礁90%以上的珊瑚死亡，并通过改变珊瑚群落组成、减少珊瑚和鱼类多样性而对珊瑚礁产生间接影响；4）关于棘冠海星暴发原因的假说中"陆地营养物质输入假说"和"捕食者过度捕捞假说"得到了最普遍的认可，但都不能解释所有的暴发事件；5）应对棘冠海星暴发的主要策略有改善水质、设立保护区、投放天敌和人工清理等，其中人工清理是最直接有效的策略，但迄今并没有发现可长期抑制棘冠海星暴发的方法。因此，急需加强对棘冠海星的深入研究，探查其暴发的根本原因和对策。     

Construction and Comparison of Two Receiver Operating Characteristic Curves Derived from the Same Samples

Receiver operating characteristic (ROC) curves are used to describe the performance of diagnostic procedures. This paper proposes a simple method for the statistical comparison of two ROC curves derived from the same set of patients and the same set of healthy subjects. Generalization to studies involving more than two screening factors is straightforward. This method does not require the calculation of variances of the areas or difference of areas under the curves.     

Mid-infrared spectroscopy and short wave infrared hyperspectral imaging—A novel approach in the qualitative assessment of Harpagophytum procumbens and H. zeyheri (Devil's Claw)

Harpagophytum procumbens (Burch.) DC. ex Meisn. subsp. procumbens (Pedaliaceae) is an important African medicinal plant growing in the Kalahari region of southern Africa. This species, together with its close taxonomic ally Harpagophytum zeyheri are collectively referred to as Devil's Claw and are used interchangeably for the treatment of inflammation-related disorders. Although the two taxa are botanically and chemically similar, H. zeyheri contains lower levels of harpagoside and these two species have not been proven to exhibit equipotent pharmacological activity. Due to these taxonomic similarities, effective quality control methods are required to distinguish between the two species. Differentiation between the two species was achieved using single point mid-infrared spectroscopy in combination with chemometric data analysis. The orthogonal projections to latent structures discriminant analysis (OPLS-DA) model had good predictive ability, as illustrated by the model statistics: R²X (cum predictive + orthogonal) = 0.86 and Q² (cum) = 0.63. Short wave infrared (SWIR) hyperspectral imaging could distinguish between the two species with acceptable model statistics: R²X and R²Y of 0.99 and 0.78, respectively. This study demonstrated that both MIR single point spectroscopy and SWIR hyperspectral imaging coupled with chemometric modelling are reliable and rapid methods to determine the authenticity of Harpagophytum spp.     

Spectrum structures and biological functions of 8-mers in the human genome

The spectra of k-mer frequencies can reveal the structures and evolution of genome sequences. We confirmed that the trimodal spectrum of 8-mers in human genome sequences is distinguished only by CG2, CG1 and CG0 8-mer sets, containing 2,1 or 0 CpG, respectively. This phenomenon is called independent selection law. The three types of CG 8-mers were considered as different functional elements. We conjectured that (1) nucleosome binding motifs are mainly characterized by CG1 8-mers and (2) the core structural units of CpG island sequences are predominantly characterized by CG2 8-mers. To validate our conjectures, nucleosome occupied sequences and CGI sequences were extracted, then the sequence parameters were constructed through the information of the three CG 8-mer sets respectively. ROC analysis showed that CG1 8-mers are more preference in nucleosome occupied segments (AUC > 0.7) and CG2 8-mers are more preference in CGI sequences (AUC > 0.99). This validates our conjecture in principle.     

Characterization and preliminary crystallographic data on the VL-related fragment of the human kI Bence Jones protein Wat

A “naturally occurring” human κI V_L dimer, designated Wat, has been isolated and crystallized. Protein Wat consists of two non-covalently bound monomers, each having a molecular weight of ~ 11,500. The monomer subunit is composed of an entire variable region light chain (V_L) domain closely homologous to that of the κI Bence Jones protein Roy (Hilschmann &; Craig, 1965) as evidenced from amino acid composition, tryptic peptide map, and sequence analysis. Immunochemical studies substantiated that protein Wat is of the κ chain subgroup κI and lacks the isotypic and allotypic antigenic determinants associated with the κ constant region light chain domain. Two types of crystals of V_L dimer Wat were obtained from ammonium sulfate or polyethylene glycol solutions. The type I crystals have unit cell dimensions of $\text{a = b = 82.6}\text{A}\text{?}\text{, c = 60.3}\text{A}\text{?}$, and the space group is hexagonal P6₂ or P6₄. The asymmetric unit consists of one V_L dimer; the fractional volume of unit cell occupied by solvent is 0.51. The unit cell dimensions of the type II crystals are $\text{a = b = 1,08.3}\text{A}\text{?}\text{, c = 108.8}\text{A}\text{?}$; the space group is hexagonal P6₁22 or P6₅22. Three variable domains constitute the asymmetric unit of the type II crystals; the fractional value of the solvent (0.52) is compatible with the value obtained for the type I crystals.     

污水处理厂生物气溶胶抗生素抗性污染特征、来源及潜在风险

污水处理厂是抗生素抗性基因（antibiotic resistance genes,ARGs）和抗生素抗性细菌（antibiotic resistant bacteria,ARB）重要的源和汇,生物气溶胶是ARGs和ARB自污水处理厂向周边环境释放的关键载体。目前缺乏对污水处理厂生物气溶胶抗生素抗性污染特征、来源及潜在风险的系统性总结。本文从采样方法、检测方法、逸散特征、来源、潜在危害和风险评估等方面对污水处理厂抗生素抗性污染研究现状进行综述。惯性采样法和过滤法是常用的污水处理厂抗生素抗性生物气溶胶主要采集方法,而宏基因组测序、组装和分箱为其ARGs组成、可移动性和宿主提供了有效的检测方法,抗多药类、抗杆菌肽类、抗氨基糖苷类、抗四环素类、抗β-内酰胺类、抗磺胺类、抗大环内酯类和抗糖肽类等抗性基因在污水处理厂PM₁₀、PM_2.5和PM_1.0颗粒物中广泛检出。格栅间、生化反应池和污泥处理单元是污水处理厂PM₁₀、PM_2.5和PM_1.0负载ARGs和ARB的主要释放单元。污水处理厂不同粒径生物气溶胶中致病性ARB的存在增加了抗生素治疗的难度,而污水和污泥对ARGs和ARB的释放起到了重要的源的贡献。本文在研究内容、研究技术和控制策略等方面也提出了相关展望,以期为污水厂生物气溶胶抗生素抗性污染的监测和防护提供参考和借鉴。     

基于SPEI指数的淮河流域干旱时空演变特征及影响研究

运用淮河流域149个气象站1962—2016年逐日气温、降水资料以及历史旱情资料,基于SPEI、EOF和M-K等方法分析淮河流域的干旱时空特征,研究干旱的时空演变规律并揭示其对农业生产的影响。结果表明:(1)基于SPEI得到的干旱频次与受灾、成灾面积的相关性通过了0.1的显著性水平检验,表明SPEI在淮河流域具有较好的适用性;(2)淮河流域干旱发生时间差异明显,干旱次数呈现波动变化,发生重旱和特旱次数占总干旱的比重是20.0%,其中重旱和特旱在1960s比重最大(24.8%),其次是2010s(15.8%),在1980s比重最低(10.0%);(3)干旱的空间分布差异大,淮河流域干旱频率在27.76%—36.04%之间,西北部和东南部发生干旱强度较西南部、东北部及中部低;(4)淮河流域总体呈干旱化的趋势,从中部到四周呈现由高到低递减的趋势变化,且空间模态表现为全区一致型、南北相反型和东西相反型。     

贵州喀斯特区C4植物物种组成与水分生态型划分

该研究通过查阅文献、核对贵州大学林学院标本库及现场群落调查与标本采集,并运用碳同位素比值法研究典型C_4植物水分利用特性,探索C_4植物在喀斯特植被恢复中的地位,进而揭示贵州喀斯特地区C_4植物资源的基本特征。结果表明:贵州喀斯特区共有C_4植物141种,隶属于74属15科,分别占全国科属种的62.50%、46.25%、24.48%,以禾本科(Gramineae)和莎草科(Cyperaceae)为主;区内C_4植物种均为一年生或多年生草本,多年生植物种略多于一年生植物种;水分生态型整体偏旱生,旱生和中生植物分别占总数的24.82%和31.21%;喀斯特区C_4植物具有高水分利用效率,但不同水分生态型间差异不显著;贵州喀斯特区C_4植物资源具有资源丰富、利用途径广泛、能长期利用、竞争力强、能大面积分布、偏旱生且水分利用幅度广的基本特征,适合喀斯特区生境,自然状态下多为恢复早期物种,有利于喀斯特区生态恢复。在贵州喀斯特恶劣生态环境下C_4植物有较好的生态适应性,并表现出较高的药用、食用、饲用、景观应用等价值,对其开发利用对贵州经济、社会发展及生态恢复有重要意义。     

木本植物木质部的冻融栓塞应对研究进展

冻融栓塞在中高纬度地区木本植物中普遍存在。抗冻融栓塞能力对在寒冷环境中木本植物的生长和安全越冬十分关键, 这直接决定植物分布范围。冻融栓塞是由于冰中气体溶解度低, 木质部水分在低温下冷冻, 使之前水中溶解的气体逸出到导管中, 随后木质部中的冰融化又使气泡扩张而引发的栓塞现象。木质部解剖结构的差异会影响植物的抗冻融栓塞能力, 植物还可以通过调节木质部正压、代谢耗能等方式主动修复冻融栓塞, 也可通过增加树液溶质含量等逃避冷冻, 以减少低温损伤。然而, 与干旱栓塞相比, 目前对木质部冻融栓塞的形成以及植物响应和调节机制的理解不足。为此, 该文首先综述了木质部冻融栓塞的形成机制和植物的逃避、忍耐、修复等3种冻融栓塞的应对策略, 然后总结了木质部抗低温胁迫能力的生理表现、影响因子和评价指标, 并在此基础上讨论了低温抗性、干旱抗性和水力效率之间的多元权衡关系, 最后提出今后该领域中的5个优先研究问题: (1)不同植物冰冻的最低温度阈值; (2)是否存在应对低温胁迫的水力脆弱性分割机制; (3)冻融栓塞修复与代谢消耗的关系; (4)低温抗性、干旱抗性和水力效率之间的权衡关系; (5)抗冻融栓塞性状是否能够纳入经济性状谱系。