A deep learning-based approach for detecting plant organs from digitized herbarium specimen images

Herbarium specimens are excellent sources of botanical information to facilitate understanding and monitoring the evolution of plants and their effects on global climate change. Globally, many herbaria have undertaken digitization projects of herbarium specimens to preserve them and make them accessible in online repositories to botanists and ecologists. Automated detection of plant organs such as plant leaves, buds, flowers, and fruits on the digitized herbarium specimen images provides valuable information in various scientific contexts. We developed a deep learning approach based on the refined YOLO-V3 approach to detect plant organs within the digitized herbarium specimen images effectively. The proposed approach combines ResNet and DenseNet architectures to improve feature extraction capabilities. Also, a new scale of feature map is added to the existing scales to address the problem of YOLO-V3's low performance in detecting small plant organs. The experimental results demonstrate that our proposed approach can detect organs of different sizes within different specimens, where the precision and recall reached 94.2% and 95.5%, respectively.     

杜鹃属基因组DNA提取及RAPD的检定

以杜鹃花属常绿杜鹃亚属井冈山杜鹃树叶为材料,分别采用修改的CTAB法、碱裂解法、SDS法提取基因组DNA。实验表明,三种方法所提的DNA纯度及产率有差别,从综合结果看,以CTAB法最好,其所提到的DNA大小与λDNA（21kb）相似,经检验该法适合杜鹃花属植物总基因组DNA的提取,所得DNA不需纯化就可直接用于RAPD分析。     

三种常绿阔叶树光系统Ⅱ在低温胁迫下的光抑制及恢复

冬季低温胁迫对亚热带常绿阔叶树光合活性的主要影响之一,体现在光合机构的低温光抑制。为了阐明冬季低温胁迫下常绿阔叶树光系统Ⅱ的光抑制程度及光保护机制,该文研究了冬季自然低温胁迫(零下低温冻害和零上低温寒害)对红叶石楠、枇杷和猴樟三种亚热带常绿阔叶树光合机构光系统Ⅱ(PSⅡ)光抑制的影响以及春季气温回暖后的恢复情况。结果表明:冻害和寒害低温胁迫使猴樟的PSⅡ活性显著降低,PSⅡ受到较严重的光抑制,低温胁迫解除后PSⅡ活性未能完全恢复。红叶石楠PSⅡ活性下降程度和光抑制程度最轻,春季PSⅡ活性显著上升,光抑制显著下降。枇杷PSⅡ活性和光抑制程度介于猴樟和红叶石楠之间。低温胁迫下红叶石楠的非光化学猝灭(NPQ)接近常温水平; 枇杷的NPQ略有降低,春季恢复正常; 猴樟NPQ最低,春季低温解除后仍不能完全恢复。此外,三种常绿阔叶树在冬季低温胁迫和春季恢复时期的NPQ与PSⅡ的光抑制程度存在显著的负相关关系。综合以上结果分析表明,冬季低温对红叶石楠PSⅡ影响不大,对枇杷有一定影响但春季气温回暖后可以及时恢复,对猴樟PSⅡ有显著的光抑制且恢复过程较慢,同时NPQ对保护常绿阔叶树PSⅡ免受冬季低温光抑制有重要的贡献。     

岭南大学植物标本室设于一九一六年

1916年,岭南学校在高鲁甫主持下成立农学部,并拟设立植物标本室,派学生赴菲律宾科学局梅尔处学习标本制作。不久后,请梅尔来广州,为之设立标本室。此为中国较早之植物标本室,对现代植物学在中国传播有积极作用。然而此段历史并不为学界所周知,该文依据史料,将其梳理呈现。     

三种紫金牛属植物的核型研究

对紫金牛属三种植物进行了核型分析,其中朱砂根染色体数目2n=46、核型2n=46=42m+2sm+2st和紫金牛核型2n=92=58m+24sm+10st为首次报道;虎舌红核型公式为2n=44=40m+2sm+2st。核型分析结果显示,紫金牛属植物存在染色体数目非整倍体变异及多倍化的进化方式。     

应用改良滴冻法超低温保存两种柿属植物的研究

以君迁子（Diospyros lotus L．）和柿（D．kaki Thunb．）组培苗茎尖为试材,对影响超低温保存效果的主要因素,如低温锻炼方式、预培养条件、PVS：（30％甘油＋15％乙二醇＋15％二甲基亚砜＋0．4mol／L蔗糖）处理时间等进行了研究。建立了2种柿属植物的超低温保存程序：（1）切取1cm左右试管苗梢段继代到1／2MS（KNO3和NH4NO3减半）培养基中,交替低温[昼（25±1）℃、夜（4±1）℃]锻炼6周;在含0．5mol／L蔗糖的1／2MS培养基上预培养5d,20℃下装载液（2．0mol／L甘油＋0．4mol／L蔗糖）过渡10min,0℃下PVS2处理1．5h;（2）投入液氮保存;（3）40℃水浴化冻,洗涤5～6次后接种于含1．0mg／LTDZ、0．6g／L可溶性PVP、30g／L蔗糖和7．0g／L琼脂的培养基（作者在优化柿属植物离体培养体系试验中获得）上暗培养1周,转入25℃,1500lx培养室。按照上述程序培养,‘鄂柿1号’、‘湘西甜柿’和君迁子的成活率分别为79．6％、67．4％和60．9％。     

末次盛冰期以来观光木的潜在地理分布变迁

观光木(Tsoongiodendron odorum)是木兰科的古老残遗物种, 目前正面临严峻的生存威胁, 属于极小种群濒危植物。通过生态位模型(ENM)能够重建观光木地理分布格局的历史变迁, 探究气候变化对该物种分布的影响, 并了解其地理分布与气候需求间的关系, 从而为全球变暖背景下观光木的保护提供理论基础。该文基于96条现代分布记录和8个环境变量, 采用最大熵(MaxEnt)模型模拟观光木在末次盛冰期、全新世中期、现代和未来(2061-2080年, RCP 8.5)的潜在分布区, 利用SDM toolbox分析观光木的地理空间变化, 并综合贡献率、置换重要值和Jackknife检验来评估气候因子的重要性。研究结果表明: (1)观光木的高度适生区在南岭地区, 末次盛冰期时没有大尺度向南退缩, 很可能在山区避难所原地存活; (2)在全新世中期和未来两个增温的气候情境下, 观光木的分布区均表现为缩减, 其中未来分布的减幅更大, 表明气候变暖对观光木的生长有一定的负面影响; (3)总体上看, 观光木各个时期的地理分布范围相对稳定, 说明观光木对气候变化有一定的适应能力, 人为活动或自身繁育问题可能是致濒的重要原因, 并建议对广东和广西群体进行优先保护。     

庐山蕨类植物区系研究

庐山共有蕨类植物39科87属247种(含变种、变型),其区系带有热带和温带双重性。其中鳞毛蕨科、水龙骨科、蹄盖蕨科、金星蕨科和铁角蕨科属种优势明显,共有38属160种,分别占总属数的43.7%和种数的64.8%,代表了该地区蕨类植物区系的一个重要特征。该区区系地理成分复杂,相互交错,其中热带性属占总属数的64.2%,温带性属占总属数的35.8%。东亚成分在该区系占有绝对优势,共有14属,占总属数的20.9%,中国特有属缺乏,特有种丰富,表明成分具有多样性并具有热带亲缘性,是亚热带向北温带的过渡地区。该区与井冈山、武夷山关系密切,与鼎湖山、秦岭和横断山关系疏远。     

IBA浓度、扦插时间对江西杜鹃和百合花杜鹃扦插生根的影响

为探明有鳞大花亚组杜鹃扦插生根的最佳IBA浓度和扦插时间,该研究以江西杜鹃、百合花杜鹃为材料,分别采用腐叶土+河沙(1:1)、泥炭+珍珠岩+蛭石(3:1:1)基质,开展了4个IBA浓度和4个扦插时间的生根试验.结果表明:IBA浓度对除老叶留存数外的所有指标有显著影响,其中100 mg·L-1 IBA处理生根率、新梢长最大,腐烂率最低,其它指标也表现良好,为最佳生根浓度;50 mg·L-1 IBA处理根幅、新梢率最大,但不定根数最少,效果其次;200 mg·L-1 IBA处理促进根系生长,但生根率较低、特别是显著抑制新梢发育;对照处理生根效果最差.扦插时间对所有生根指标均有显著影响,早春(04-18)木质化硬枝扦插除老叶留存数较差外,其它指标均表现极佳,为最适扦插时间;秋季(10-19)半木质-木质化过渡枝扦插效果其次;夏季(06-21)嫩枝及(08-16)半木质化枝生根效果极差,不宜进行扦插育苗.物种、基质对生根指标也有显著影响,百合花杜鹃扦插生根能力强于江西杜鹃,泥炭+珍珠岩+蛭石(3:1:1)基质生根效果优于腐叶土+河沙(1:1).该研究结果首次发现早春新梢萌发前采用木质化硬枝扦插可以显著提高两种杜鹃的生根效果,为该亚组杜鹃的扦插育苗提供了科学依据.     

Whole-plant carbon relations and root respiration associated with root tolerance to high soil temperature for Agrostis grasses

Plant tolerance to high soil temperature may be related to the adjustment in carbon production and utilization. The objective of this study was to determine changes in whole-plant carbon balance and root respiration rate in relation to root tolerance to high soil temperature for two Agrostis grass species varying in heat tolerance. Plant tolerance to high soil temperature was compared between Agrostis scabra, a thermal grass species adapted to chronic high-temperature soils in the geothermal areas in Yellowstone National Park, and creeping bentgrass (Agrostis stolonifera), a cultivated grass species adapted to cool climatic regions. Plant roots were exposed to low soil temperature (20 °C) or high soil temperature (37 °C) for 17 days in water baths placed in a controlled-environment growth chamber. Root biomass and cell membrane stability were determined to evaluate root thermotolerance of both species. Canopy photosynthetic rate (Pn), whole-plant respiration rate, root respiration rate, and total non-structural carbohydrate (TNC) content were measured to assess changes in carbon production and utilization in response to high soil temperature. Root biomass and cell membrane stability declined with increasing soil temperature, but the decline was much less for A. scabra than A. stolonifera, suggesting that roots of A. scabra were more tolerant to heat stress. Canopy Pn decreased and whole-plant respiration rate increased for A. stolonifera, but canopy Pn and respiration rate were unchanged for A. scabra in response to increasing soil temperature. After 17 days of high soil temperature treatment, A. stolonifera exhibited carbon deficit at the whole-plant level, whereas A. scabra maintained positive carbon gain. Root respiration of plants previously grown at 20 °C increased after a short-term treatment (24 h) at 37 °C, but the increase was significantly lower for A. scabra than for A. stolonifera. TNC content in roots did not show response to short-term (24 h) changes in temperature and did not exhibit species variations. Leaves of A. scabra, however, maintained TNC content under both low and high temperature regimes. Our results suggest that root thermotolerance of cool-season grasses could be related to the maintenance of positive whole-plant carbon balance, and down-regulation of whole-plant and root respiration rates in response to increasing soil temperature.