Molecular markers for the identification of the ectomycorrhizal fungus Tuber borchii

Five species of white truffle were classified using PCR-based techniques. RAPD (random amplified polymorphic DNA) fingerprints and specific pairs of primers were used. A RAPD fragment was constant in Tuber borchii Vittad. isolates and polymorphic among the other species. Two molecular markers specific for T. borchii were developed from the sequence of the non-polymorphic RAPD fragment and from regions flanking the 5'-3' ends of a truffle gene. These markers were applied in the identification of T. borchii fruit bodies, mycelia and mycorrhizas, allowing us to monitor the development of this fungus during its entire life cycle.     

基于SSR标记的彩色马铃薯亲缘关系分析及指纹图谱构建

为了探究彩色马铃薯种质资源的遗传背景,该试验共选用22对SSR标记引物,对33份彩色马铃薯品种(系)进行遗传多样性分析以及指纹图谱构建。结果表明:(1)22对引物可扩增得到95个等位位点,其中82个为多态性位点,多态性比率达到86.31%;多态信息量(PIC)从0.168 7(STM1053)到0.991 9(STI033),平均为0.8411。(2)UPGMA聚类分析表明,在相似系数0.71处,33份供试材料分为4个主要聚类群,不同聚类群之间具有较大的遗传差异。(3)利用STM0031、STM0030、STI014、STM1029、STI001共5对SSR标记引物构建了33份彩色马铃薯材料的分子标记指纹图谱。该研究结果为彩色马铃薯育种亲本组配奠定了理论基础,有助于彩色马铃薯种质资源的快速鉴定。     

Applications of a novel biodetection system to saliva using protein fingerprints with data processing

A fundamental method has been developed focusing on a facile and rapid examination of periodontal disease. Periodontal disease is an oral disease thought to affect 80% of adults, and early detection with treatment is desirable for the improvement of the quality of life. Unfortunately conventional methods are not consistent as the disease is caused by a number of undefined bacteria and detection relies on the skills of the dentist. Thus an objective detection system is required. We have performed an experiment on saliva using a novel biodetection system, designated PepTenChip®. A disease model for saliva was prepared using a specimen from a healthy subject and a mixture of hemoglobin (f-Hb) and lactate dehydrogenase (LDH), which is used as a periodontal disease marker protein with healthy saliva. PepTenChip® is a peptide microarray in which fluorescent labelled structured peptides are immobilized on a novel amorphous carbon substrate. Since the peptides used as capture molecules are fluorescently labelled, labeling of analytes is not necessary. The fluorescence intensity change before and after application of analytes are detected rather than the ON/OFF detection common to conventional microarrays using a set of antigen–antibody. The fluorescence intensity value changes according to the concentration of captured protein allowing the generation of protein fingerprint (PFP) and dendrograms. The present method does not rely on a “one to one” interaction, unlike conventional biodetection, and advantages can be envisaged in the case of an undefined or unknown cause of disease. The statistical analyses, such as multivariate analyses, allow classification of the type of proteins added in saliva as mimetics of disease. PepTenChip® system is useful and convenient for examination of periodontal disease in health care.     

Identification of a novel conserved sequence motif in flavoprotein hydroxylases with a putative dual function in FAD/NAD(P)H binding.

A novel conserved sequence motif has been located among the flavoprotein hydroxylases. Based on the crystal structure and site-directed mutagenesis studies of p-hydroxybenzoate hydroxylase (PHBH) from Pseudomonas fluorescens, this amino acid fingerprint sequence is proposed to play a dual function in both FAD and NAD(P)H binding. In PHBH, the novel sequence motif (residues 153-166) includes strand A4 and the N-terminal part of helix H7. The conserved amino acids Asp 159, Gly 160, and Arg 166 are necessary for maintaining the structure. The backbone oxygen of Cys 158 and backbone nitrogens of Gly 160 and Phe 161 interact indirectly with the pyrophosphate moiety of FAD, whereas it is known from mutagenesis studies that the side chain of the moderately conserved His 162 is involved in NADPH binding.     

Molecular fingerprinting of Helicanthus elastica (Desr.) Danser growing on five different hosts by RAPD

Mistletoes are hemiparasitic plants growing on aerial parts of other host trees. Many of the mistletoes are reported to be medicinally important. The hemiparasitic nature of these plants makes their chemical composition dependent on the host on which it grows. They are shown to exhibit morphological dissimilarities also when growing on different hosts. Helicanthus elastica (Desr.) Danser (mango mistletoe) is one such less explored medicinal mistletoe found on almost every mango tree in India. Traditionally, the leaves of this plant are used for checking abortion and for removing stones in the kidney and urinary bladder while significant antioxidant and antimicrobial properties are also attributed to this species of mistletoe. The current study was undertaken to evaluate molecular differences in the genomic DNA of the plant while growing on five different host trees using four random markers employing random amplified polymorphic DNA (RAPD) followed by similarity matrix by Jaccard’s coefficient and distance matrix by hierarchal clustering analysis. Similarity and distance matrix data employing just 4 random markers, separately and the pooled data as well, revealed significant difference in the genomic DNA of H. elastica growing on five different hosts. Pooled data of similarity from all the 4 primers cumulatively showed similarity between 0.256 and 0.311. Distance matrix ranged from of 0.256 to 0.281 on pooling the data from all the four primers. The result employing a minimum number of primers could conclude that genomic DNA of H. elastica differs depending upon the host on which it grows, hence the host must be considered while studying or utilizing this mistletoe for medicinal purposes.     

Hypervariable DNA Fingerprint Loci in Microseris pygmaea (Asteraceae,Lactuceae)

Oligo-GATA containing probes reveal DNA fingerprinting patterns in DNA of Microseris pygmaea after restriction enzyme digestion. There are only a few major restriction fragments. These are longer than 2 kb, and they differ completely among plants from different populations, among most members of a single local inbreeding population, and even among some parent and offspring plants. In the F2 of an interpopulation hybrid, major fingerprint bands could be assigned to 2 unlinked loci by 3: 1 and 1: 2: 1 segregations respectively, one further band segregated roughly 1: 1, one band appeared irregularly. The hypervariability of the GATA-fingerprint loci contrasts with a low variability of other genetic markers in M. pygmaea and with a more complex but less variable GATA-fingerprint pattern in related species.     

基于GC-IMS技术的不同红火蚁监测诱饵的风味成分分析

探讨不同红火蚁Solenopsis invicta Buren监测诱饵的风味成分,以期获得优化诱饵配方的科学依据。本文采用顶空气相色谱-离子迁移谱法分析不同红火蚁监测诱饵在60℃下的气味指纹图谱,并通过主成分分析法分析其风味物质的差异。结果共鉴定出93个信号峰和87种挥发性化合物,载体物质（CK）中具有较高强度峰的化合物包括3种苯、2种醇、3种酮、2种酯、4种醛、1种呋喃和1种烯;自主配制的诱饵（JR、ZR、JZ）的风味组成相似,较高强度峰的化合物包括2种醇、1种酸、12种醛和1-8桉叶素等;市售火腿肠（HT）中的3种烯、10种酮、1种苯、5种醛、1种呋喃、3种醚、7种醇和4种酯是具有较高强度峰的化合物。主成分分析表明,CK、HT与自主研发的诱饵聚集距离较远,三者均单独聚为一类,相互风味成分区别较大。综上所述,JR、ZR和JZ诱饵中醛类物质较多,而HT中酮类与醇类物质较为丰富。上述诱饵的风味成分分析结果能为研发精准高效的红火蚁监测专用诱饵提供重要信息。     

双单杂交技术选育亮盖灵芝与白肉灵芝优良性状杂交子

以亮盖灵芝Ganoderma lucidum和白肉灵芝G. leucocontextum为亲本,采用亮盖灵芝异核体双核菌丝与通过原生质体单核化获得的白肉灵芝单核体进行双单杂交,最终获得34株杂交子。采用ISSR技术对34株杂交子及亲本进行DNA多态性聚类分析,杂交子主要分为两个类群。对杂交子进行生长速度和灵芝酸含量对比,筛选到4株优质杂交子。进一步进行杂交子及亲本间HPLC指纹图谱对比,发现4株杂交子中有3株HPLC指纹图谱在具备两个亲本特征灵芝酸的同时,还有低极性灵芝酸的产生。