Asymptotic Relative Efficiency of Some Jackknife Estimators of a Common Odds Ratio

In the situation of several 2 × 2 tables the asymptotic relative efficiencies of certain jackknife estimators of a common odds ratio are investigated in the case that the number of tables is fixed while the sample sizes within each table tend to infinity. The estimators show very good results over a wide range of parameters. Some situations in which the estimators have low asymptotic relative efficiency are pointed out:.     

2D gene expression parameters of wing imaginal disc of Drosophila for developmental analysis

 By using high resolution two-dimensional (2D) gel electrophoresis coupled with computer-analysis we have established a quantitative Drosophila wing imaginal disc protein database of third instar larvae as a reference to be used for comparative purposes in genetic studies. A general catalogue integrated by 1,184 ³⁵S-methionine-labelled polypeptides from wing imaginal disc has been obtained. The level of expression for all the proteins has been quantitatively determined. The quantitative reproducibility of the analysis system has been estimated and all the controls studied as database reference to interpret the results of experiments with mutant discs. One example, corresponding to iro ¹ mutation, has been used to show how some of the changes observed with mutant discs clearly extend out of the limits defined by the controls. This enables us to generate comparative parameters for the study of proliferation, morphogenesis and differentiation of Drosophila and opens the possibility of rapidly defining the nature and quantity of changes in patterns of gene expression in developmental genetic studies. Received: 21 June 1996 / Accepted: 27 September 1996     

Deep mutational scanning identifies SARS-CoV-2 Nucleocapsid escape mutations of currently available rapid antigen tests

1. Download : Download high-res image (239KB)
2. Download : Download full-size image

     

COVID-19 and “natural” experiments arising from physical distancing: a hypothetical case study from chronobiology

ABSTRACT

With countless “natural” experiments triggered by the COVID-19-associated physical distancing, one key question comes from chronobiology: “When confined to homes, how does the reduced exposure to natural daylight arising from the interruption of usual outdoor activities plus lost temporal organization ordinarily provided from workplaces and schools affect the circadian timing system (the internal 24 h clock) and, consequently, health of children and adults of all ages?” Herein, we discuss some ethical and scientific facets of exploring such natural experiments by offering a hypothetical case study of circadian biology.     

Enhancing native chemical ligation for challenging chemical protein syntheses

Native chemical ligation has enabled the chemical synthesis of proteins for a wide variety of applications (e.g., mirror-image proteins). However, inefficiencies of this chemoselective ligation in the context of large or otherwise challenging protein targets can limit the practical scope of chemical protein synthesis. In this review, we focus on recent developments aimed at enhancing and expanding native chemical ligation for challenging protein syntheses. Chemical auxiliaries, use of selenium chemistry, and templating all enable ligations at otherwise suboptimal junctions. The continuing development of these tools is making the chemical synthesis of large proteins increasingly accessible.     

Role of Asp297 of the AT2 receptor in high-affinity binding to different peptide ligands

To determine how ligand-receptor interaction is affected by the charges of the amino acids at position 2 of the ligands and position 297 of the AT2 receptor, we generated the Asp297Lys mutant of AT2 and a ligand SarAsp²Ile. Asp297Lys mutant lost affinity to Ang II and SarIle however retained partial affinity to ¹²⁵I-CGP42112A. The SarAsp²Ile had high affinity to Asp297Lys (IC₅₀3.5nM) and partial affinity to the AT2 (IC₅₀15nM). Therefore, not only the charge, but also the length of the side arms of the amino acids at position 2 of the ligand and position 297 of the receptor affect their interaction.     

Gas exchange and chlorophyll fluorescence responses of three south-western Yucca species to elevated CO2 and high temperature

The ability of seedlings to tolerate temperature extremes is important in determining the distribution of perennial plants in the arid south-western USA, and the manner in which elevated CO₂ impacts the ability of plants to tolerate high temperatures is relatively unknown. Whereas the effects of chronic high temperature (30–38°C) and elevated CO₂ are comparatively well understood, little research has assessed plant performance in elevated CO₂ during extreme (> 45 °C) temperature events. We exposed three species of Yucca to 360 and 700 μmol CO₂ mol^–1 for 8 months, then 9 d of high temperature (up to 53 °C) to evaluate the impacts of elevated CO₂ on the potential for photosynthetic function during external high temperature. Seedlings of a coastal C₃ species (Yucca whipplei), a desert C₃ species (Yucca brevifolia), and a desert CAM species (Yucca schidigera), were used to test for differences among functional groups. In general, Yuccas exposed to elevated CO₂ showed decreases in carboxylation efficiency as compared with plants grown at ambient before the initiation of high temperature. The coastal species (Y. whipplei) showed significant reductions (33%) in CO₂ saturated maximum assimilation rate (A_max), but the desert species (Y. brevifolia and Y. schidigera) showed no such reductions in A_max. Stomatal conductance was lower in elevated CO₂ as compared with ambient throughout the temperature event; however, there were species-specific differences over time. Elevated CO₂ enhanced photosynthesis in Y. whipplei at high temperatures for a period of 4 d, but not for Y. brevifolia or Y. schidigera. Elevated CO₂ offset photoinhibition (measured as F_v/F_m) in Y. whipplei as compared with ambient CO₂, depending on exposure time to high temperature. Stable F_v/F_m in Y. whipplei occurred in parallel with increases in the quantum yield of photosystem II (ΦPSII) at high temperatures in elevated CO₂. The value of ΦPSII remained constant or decreased with increasing temperature in all other treatment and species combinations. This suggests that the reductions in F_v/F_m resulted from thermal energy dissipation in the pigment bed for Y. brevifolia and Y. schidigera. The greater efficiency of photosystem II in Y. whipplei helped to maintain photosynthetic function at high temperatures in elevated CO₂. These patterns are in contrast to the hypothesis that high temperatures in elevated CO₂ would increase the potential for photoinhibition. Our results suggest that elevated CO₂ may offset high-temperature stress in coastal Yucca, but not in those species native to drier systems. Therefore, in the case of Y. whipplei, elevated CO₂ may allow plants to survive extreme temperature events, potentially relaxing the effects of high temperature on the establishment in novel habitats.     

Genome-wide CRISPR Screens Reveal Host Factors Critical for SARS-CoV-2 Infection

1. Download : Download high-res image (212KB)
2. Download : Download full-size image

     

Genetic Screens Identify Host Factors for SARS-CoV-2 and Common Cold Coronaviruses

1. Download : Download high-res image (157KB)
2. Download : Download full-size image