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Joshua C Kwekel Vikrant Vijay Varsha G Desai Carrie L Moland James C Fuscoe 《Biology of sex differences》2015,6(1)
Background
Growing evidence suggests that epigenetic mechanisms of gene regulation may play a role in susceptibilities to specific toxicities and adverse drug reactions. MiRNAs in particular have been shown to be important regulators in cancer and other diseases and show promise as predictive biomarkers for diagnosis and prognosis. In this study, we characterized the global kidney miRNA expression profile in untreated male and female F344 rats throughout the life span. These findings were correlated with sex-specific susceptibilities to adverse renal events, such as male-biased renal fibrosis and inflammation in old age.Methods
Kidney miRNA expression was examined in F344 rats at 2, 5, 6, 8, 15, 21, 78, and 104 weeks of age in both sexes using Agilent miRNA microarrays. Differential expression was determined using filtering criteria of ≥1.5 fold change and ANOVA or pairwise t-test (FDR <5%) to determine significant age and sex effects, respectively. Pathway analysis software was used to investigate the possible roles of these target genes in age- and sex-specific differences.Results
Three hundred eleven miRNAs were found to be expressed in at least one age and sex. Filtering criteria revealed 174 differentially expressed miRNAs in the kidney; 173 and 34 miRNAs exhibiting age and sex effects, respectively. Principal component analysis revealed age effects predominated over sex effects, with 2-week miRNA expression being much different from other ages. No significant sexually dimorphic miRNA expression was observed from 5 to 8 weeks, while the most differential expression (13 miRNAs) was observed at 21 weeks. Potential target genes of these differentially expressed miRNAs were identified.Conclusions
The expression of 56% of detected renal miRNAs was found to vary significantly with age and/or sex during the life span of F344 rats. Pathway analysis suggested that 2-week-expressed miRNAs may be related to organ and cellular development and proliferation pathways. Male-biased miRNA expression at older ages correlated with male-biased renal fibrosis and mononuclear cell infiltration. These miRNAs showed high representation in renal inflammation and nephritis pathways, and included miR-214, miR-130b, miR-150, miR-223, miR-142-5p, miR-185, and miR-296*. Analysis of kidney miRNA expression throughout the rat life span will improve the use of current and future renal biomarkers and inform our assessments of kidney injury and disease.Electronic supplementary material
The online version of this article (doi:10.1186/s13293-014-0019-1) contains supplementary material, which is available to authorized users. 相似文献63.
Neural stem cells (NSCs) are capable of self-renewal and differentiation into neurons, astrocytes and oligodendrocytes under specific local microenvironments. In here, we present a set of methods used for three dimensional (3D) differentiation and miRNA analysis of a clonal human neural stem cell (hNSC) line, currently in clinical trials for stroke disability ( and NCT01151124, Clinicaltrials.gov). HNSCs were derived from an ethical approved first trimester human fetal cortex and conditionally immortalized using retroviral integration of a single copy of the c-mycERTAMconstruct. We describe how to measure axon process outgrowth of hNSCs differentiated on 3D scaffolds and how to quantify associated changes in miRNA expression using PCR array. Furthermore we exemplify computational analysis with the aim of selecting miRNA putative targets. SOX5 and NR4A3 were identified as suitable miRNA putative target of selected significantly down-regulated miRNAs in differentiated hNSC. MiRNA target validation was performed on SOX5 and NR4A3 3’UTRs by dual reporter plasmid transfection and dual luciferase assay. NCT02117635相似文献
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Colorectal cancer (CRC), the third most common cancer worldwide, also has the
highest rate of cancer-related morbidity and mortality. WNT signaling is
initiated by binding of WNT to various receptors, including frizzleds (FZDs),
and plays a critical role in CRC and other tumor development by regulating
proliferation, differentiation, migration, apoptosis, and polarity. Among the
members of the FZD family, FZD6 is broadly expressed in various tissues, and its
overexpression has been reported in several cancers, suggesting an important
role in cancer development. In this study, we investigated the expression of
FZD6 in patients with CRC and found it to be increased in tumors, as compared to
paired adjacent non-tumor tissues. Additionally, we found that FZD6 expression
was negatively regulated by miR199a5p in CRC cells. These results suggest that
overexpression of FZD6, mediated by reduced expression of miR-199a-5p, may play
an important role in the development of CRC. [BMB Reports 2015; 48(6):
360-366] 相似文献
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microRNA(miRNA)对调控基因表达有着重要作用,病毒与宿主在miRNA水平存在着复杂的"对话"。研究显示,人类免疫缺陷病毒(HIV)可能编码病毒miRNA(vmiRNA),通过维持病毒潜伏、保护感染细胞免于凋亡或外力刺激下的细胞死亡等方式,在HIV病理过程中发挥重要作用。宿主miRNA则参与到了抗HIV的防御性机制中,但也面临HIV调控相应宿主miRNA、编码RNA沉默抑制物等多种阻力。深入研究HIV与宿主间miRNA水平上的动态相互作用,有助于进一步了解HIV的致病机理,开发新的治疗策略。 相似文献
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沉默交配型信息调节因子2同源蛋白1(silent mating type information regulation 2 homolog 1,Sirt1)是哺乳动物中与酵母沉默信息调节蛋白2(silencing information regulator 2,Sir2)高度同源的蛋白质,它是一种依赖NAD+的III类组蛋白去乙酰化酶(HDAC III),在细胞分化、衰老、凋亡、DNA损伤修复、能量及内分泌代谢调节中起重要作用,同时在基因沉默、表观遗传学修饰、转录调控及信号转导调节中发挥重要的生物学功能。本文对其近年的研究进展做一概述。 相似文献
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目的 联合采用表达谱芯片和下一代测序技术同时高通量筛选先天性心脏病胎儿心肌组织表达差异的miRNA.方法 实验组为孕中期先天性畸形胎儿,对照组为同胎龄无心脏畸形的难免流产的胎儿,取胎儿心室心肌组织,联合采用Agilent Human 2.0 microRNAs表达谱芯片和SOLiD下一代测序技术同时观察心肌组织microRNA的表达变化,数据采用生物信息学方法进行分析,并用实时PCR方法验证芯片结果.结果 通过差异miRNA筛选,发现先天性心脏畸形组在表达谱芯片和下一代测序中共同差异的24个miRNA,生物信息学预测到1 606个靶基因,靶基因Gene Ontology分析表明其中与细胞进程、代谢过程、生物调控相关的靶基因为主,Pathway显著性分析表明,部分靶基因为生物信号通路中的关键因子;随机挑选共同表达差异的4个miRNA进行验证,结果表明定量PCR检测结果与芯片与下一代测序共同筛选结果基本相符.结论 这些在先天性心脏病中异常表达的miRNA为研究先天性心脏病分子水平上的发病机制提供了重要的线索,将有可能为心脏相关疾病的诊断和治疗提供新的靶点和研发新的药物. 相似文献
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鼻咽癌(nasopharyngeal carcinoma, NPC)是一种多基因遗传性疾病,好发生于我国华南、东南亚及部分非洲地区。近年来随着分子生物学及其技术的迅速发展,人们对鼻咽癌发生、发展及其生物学行为的研究已进入基因水平。microRNA(miRNA)是一类广泛存在于动植物体内的非编码小RNA,主要参与基因转录后水平调控。随着对miRNA研究的深入,发现肿瘤的细胞分化障碍、增殖失控、细胞永生化与miRNA密切相关。人类肿瘤组织与正常细胞组织间的miRNA表达水平和类型存在明显差异,提示miRNA可能是一类新的参与肿瘤发生的重要分子。本文就鼻咽癌与miRNA相关的研究进展作一综述。 相似文献