The developmental evolution of avian digit homology: An update

The identity of avian digits has been unresolved since the beginning of evolutionary morphology in the mid-19th century, i.e. as soon as questions of phylogenetic homology have been raised. The main source of concern is the persistent discrepancy between anatomical/paleontological and embryological evidence over the identity of avian digits. In this paper, recent evidence pertaining to the question of avian digit homology is reviewed and the various ideas of how to resolve the disagreement among developmental and phylogenetic evidence are evaluated. Paleontological evidence unequivocally supports the hypothesis that the fully formed digits of maniraptoran theropods are digits DI, DII, and DIII, because the phylogenetic position of Herrerasaurus is resolved, even when hand characters are excluded from the analysis. Regarding the developmental origin of the three digits of the avian hand the discovery of an anterior digit condensation in the limb bud of chickens and ostriches conclusively shows that these three digits are developing from condensations CII, CIII, and CIV. The existence of this additional anterior condensation has been confirmed in four different labs, using four different methods: Alcian blue staining, PNA affinity histochemistry, micro-capillary regression and Sox9 expression. Finally, recent evidence shows that the digit developing from condensation CII has a Hox gene expression pattern that is found in digit DI of mice forelimb and chick hind limbs. The sum of these data supports the idea that digit identity has shifted relative to the location of condensations, known as Frame Shift Hypothesis, such that condensation CII develops into digit DI and condensation CIII develops into digit DII, etc. A review of the literature on the digit identity of the Italian Three-toed Skink or Luscengola (Chalcides chalcides), shows that digit identity frame shifts may not be limited to the bird hand but may be characteristic of “adaptive” digit reduction in amniotes (sensu Steiner, H., Anders, G., 1946. Zur Frage der Entstehung von Rudimenten. Die Reduktion der Gliedmassen von Chalcides tridactylus Laur. Rev. Suisse Zool. 53, 537–546) in general. In this mode of evolution two digits are lost, in the course of the adaptation of the three anterior digits to a function that does not require the two posterior digits. This evidence suggests that the evolution of digits in tetrapods can proceed at least on two distinct levels of integration, the level of digit condensations and that of adult digits.     

Chemistry of the uropygial gland secretion of Hume’s ground jay Pseudopodoces humilis and its taxonomic implications

Humes ground jay (Pseudopodoces humilis), a species living in the high altitude steppes of the Qinghai-Tibet-Plateau (China), was traditionally thought to be a ground jay related to the genus Podoces (Corvidae). Recently, however, based on three independent datasets (comparative osteology, nuclear and mitochondrial DNA sequences), this species was discovered to be a member of the Paridae. Here, we reinvestigate the systematic position of Pseudopodoces humilis using the chemical composition of uropygial gland secretions, which have previously been shown to be phylogenetically informative in birds, including Corvidae and Paridae. We found strong similarities in the fatty acid composition of uropygial gland secretions between Pseudopodoces humilis and parids, but clear differences from corvids. This result supports the parid affinites of Pseudopodoces, but stands in contrast to behavioural and vocal characteristics which are clearly more similar to corvids than to parids.Communicated by A.J. Helbig     

Charles Darwin’s bird collection and ornithological knowledge during the voyage of H.M.S. “Beagle”, 1831–1836

This paper analyses Charles Darwins bird collection and the ornithological knowledge he derived from it during the voyage of H.M.S. Beagle. Darwin collected 468 bird skins, 10 detached parts of the lesser rhea, and the nests and eggs of 16 different taxa as well as 14 whole birds and 4 parts of birds which he preserved in spirit. He labelled these specimens with a number tag only, cross-referring the number to a notebook entry. Partly because of his limited ornithological knowledge and partly because he was confronted at times with entirely unknown birds, Darwin was often unable to apply the correct generic designations and gave his South American specimens English and Spanish names from literature and the local tongues, as well as the scientific generic names of European birds. Back home, it was John Gould, the prominent ornithologist of the Zoological Society of London, who made sense of Darwins collection, among his many other scientific achievements correctly identifying the Galápagos finches as a group of closely related birds. Darwins bird collection did not receive much attention in the latter part of the 19th century. Most of the specimens had their original labels removed and replaced by ones of the custodian institution. Today, original Darwin specimens stemming from the Beagle voyage are to be found in at least eight different institutions, but almost half of the bird specimens Darwin collected on the Beagle voyage are not accounted for. The appendix to this paper lists for the first time all the birds which Darwin collected during the voyage. Darwins famous book On the origin of species hardly draws upon any ornithological examples from his voyage on the Beagle. Nevertheless, Darwin contributed much to ornithology. His collection contained 39 new species and subspecies of birds, mainly described by Gould, and some birds from populations now extinct, and he also made a few very good field observations, published in the sections of The Zoology of the Voyage of H.M.S. Beagle dedicated to birds.

Distribution-abundance relationship for passerines breeding in Tunisian oases: test of the sampling hypothesis

The positive relationship between local abundance and distribution of species is a widely recognized pattern in community ecology. However, it has been suggested that this relationship can simply be an artefact of sampling because locally rare species are less detectable then locally abundant ones, and hence their distribution can easily be underestimated. Here, we use count data to investigate the relationship between distribution and abundance of passerines breeding in a sample of oases from southern Tunisia, and we provide a test of the sampling artefact hypothesis. In particular, we checked for a difference in detection probability between localized and widespread species, and we tested if increasing the sampling effort affects the significance of the relationship. A significant positive relationship between the average local abundance of passerine species and the proportion of occupied oases was found. The use of a capture-recapture approach allowed us to estimate and to compare the detection probabilities of localized and widespread species subsets. We found that localized species were locally less detectable than widespread species, which is consistent with the main assumption of the sampling artefact hypothesis. However, increasing the detection probability of species by conducting more counts did not affect the significance of the relationship, which did not give support to the sampling artefact hypothesis. Our work implies that sampling contributed to the distribution-abundance relationship we found, but that it is unlikely that such a relationship could entirely be explained by an artefact of sampling. It also underlines the insight that can be gained by using probabilistic approaches of estimating species number and detection probability when attempting to disentangle sampling from ecological effects in community ecology studies.     

Bird species richness patterns of northern Taiwan: primary productivity, human population density, and habitat heterogeneity

Energy, climate, habitat heterogeneity, and human activity are important correlates of spatial variation in species richness. We examined the correlation between species richness and these variables using the birds that breed in northern Taiwan. We conducted general linear models (GLMs) and spatial correlation models to examine the relationship between bird species richness (BSR) and environmental variables. We found that normalized difference vegetation index (NDVI) was the most important predictor of BSR. We suggest productivity is the primary process of BSR. Additionally, we hypothesized that scale dependency might exist in the relationship between BSR and NDVI in Taiwan. Human population density, the second most important factor, was inversely correlated with BSR. The factor and BSR did not have similar response to NDVI, which contradicted observations in most of the previous studies on human population vs. species richness. We proposed that the human population density had an effect on NDVI, which in turn had an effect on BSR. Moreover, we hypothesized that the contradiction between our study and the previous studies might arise from a higher level of human disturbance in Taiwan than in other areas. The necessity of conserving native species in intensively developed lowlands of Taiwan cannot be overemphasized. Number of land cover type was another significant predictor of BSR. Habitat heterogeneity may have an effect on BSR in Taiwan.     

Submersed macrophytes as a food source for wintering waterbirds at Lake Constance

We investigated the relationship between Charophytes and herbivorous waterbirds in the littoral zone of Lake Constance by quantifying their seasonal dynamics. The waterfowl extensively consumed Charophyte vegetation in shallower areas (<1 m water depth) at the beginning of the winter season, while deeper regions were only used in late winter. By the end of winter, the waterfowl had almost completely depleted the available Charophyte biomass down to a water depth of approximately 2 m (relative to average mean water level (AML)). Enclosure experiments revealed that senescence processes had a negligible influence on Charophytes biomass loss until early February. Coot, Red-crested Pochard and Pochard are the main avian Chara consumers in winter. Despite their great influence on biomass in winter, their influence on subsequent Charophyte regeneration is probably limited in Lake Constance, since Charophytes as typical pioneer species produce innumerable diaspores forming dense Charophyte meadows at a depth of between 1 and 4 m every year.     

Alternation between clear,high-vegetation and turbid,low-vegetation states in a shallow lake: the role of birds

External phosphorus load to a wetland with two shallow lakes in the Botshol Nature Reserve, the Netherlands, was reduced since 1989, resulting in a rapid reduction of phosphorus levels, phytoplankton biomass and turbidity, and after 4 years, explosive growth of Characeae. The clear water state was unstable, however, and the ecosystem subsequently alternated between clear, high-vegetation and turbid, low-vegetation states. The switch from clear to turbid states occurred at a higher phosphorus level than the switch from turbid to clear states and area covered by macrophytes was significantly correlated to Secchi disc depth (r = 0.86, p < 0.001). Beginning in 1997, phosphorus input from droppings of greylag geese and black-headed gulls increased. The hypothesis that grazing prevented the return of Characeae populations was tested during 1996–1997 using large-scale exclosure experiments. The biomass and cover of Characeae were monitored in 17 exclosures for 2 years. The experiments showed no significant increase in Characeae in the absence of grazers compared with the controls. During the course of the experiments, the entire lake switched from turbid water to clear water and high Chara biomass. These ecosystem developments suggest that light limitation was the main factor controlling the collapse and return of Characeae in Botshol.     

Effect of endurance flight on haematocrit in migrating birds

The effects of an endurance flight on the haematocrit, the percentage of packed red blood cells per blood volume, were examined within the framework of six possible factors explaining possible changes in the haematocrit. Two approaches were adopted: (1) the haematocrit was studied in four species of passerine birds which landed on an Italian island after having crossed the Mediterranean Sea on their spring migration in a non-stop flight; (2) the haematocrit was evaluated in six individual red knots after a flight of 1, 2, 4 and 10 h in a wind tunnel and the data thus obtained compared with data on resting birds with or without food. In the four passerine species, the haematocrit decreased from 51% in fat birds to 48% in lean birds. In lean birds, the haematocrit dropped from 48% in birds with well-developed breast muscles to 36% in birds with emaciated breast muscles. In the red knots, the haematocrit was dependent on body mass in flying and resting birds. The haematocrit decreased from about 51% pre-flight to about 49% within 1 h of flight and remained at this level for up to 10 h of flight. Taking the results from the passerines and the red knots together, it seems that the haematocrit drops by a few percentage points within 1 h after the onset of flight, decreases very slowly with decreasing body mass and decreases more steeply in very lean birds having entered stage III of fasting. This indicates that dehydration is not an underlying factor in decreased haematocrit because if this were the case we would expect an increase with endurance flight. We found no effect of the presence of blood parasites on haematocrit. With the onset of flight, haemodilution may be adaptive, because it reduces blood viscosity and, thereby, energy expenditure by the heart, or it may be a sign of water conservation as an insurance against the risk of dehydration during long non-stop flights. During endurance flight, a reduction in the haematocrit may be adaptive, in that oxygen delivery capacity is adjusted to the decreased oxygen needs as body mass decreases. A decreasing haematocrit would also allow birds to reduce heart beat frequency and/or heart size, because blood viscosity decreases disproportionally with decreasing haematocrit. However, when energy stores are about to come to an end and birds increase protein breakdown, the haematocrit decreases even further, and birds probably become anaemic due to a reduced erythropoiesis.     

Migratory connectivity and temporal segregation of dunlin (Calidris alpina) in Portugal: evidence from morphology, ringing recoveries and mtDNA

Migratory connectivity plays an important role in conservation of long-distance migrant birds. Here, we study migratory links of dunlin (Calidris alpina), focusing on a stopover and wintering region (Portugal) where it is known that migration routes of dunlin from a broad geographic range (three subspecies) converge, and populations occur simultaneously or separated in time. We combine three methods (ringing recoveries, morphometrics and molecular genetics) to assess breeding origins and extent of temporal segregation of dunlin assemblages. Ringing recoveries show temporal separation of dunlin from different migration routes. Birds found in Portugal during August and September, migrating via Britain, reveal links to breeding areas in Iceland and Greenland. In October, a clear shift to more eastern migration routes occurs, with most Portuguese winter records from stopover sites along migration routes of populations from northern Scandinavia and Russia. Mitochondrial DNA (mtDNA) of Portuguese dunlin was compared with breeding populations. Spring and autumn migrants in Portugal corresponded to C. a. schinzii and C. a. arctica populations, while the Portuguese winter population clearly differs by including mtDNA haplotypes of C. a. alpina. For genetically sexed individuals, we found significant differences in morphology (bill and tarsus length) supporting the temporal separation of populations/subspecies revealed by recoveries and mtDNA. Our results give evidence for migratory connectivity of dunlin populations between geographic areas previously not considered connected. They confirm the existence of clear differences in breeding origin between birds in Portugal at different times of year. These results are important in the consideration of future long-term conservation plans.     

颍上八里河自然保护区鹭卵3种重金属残留分析

2005年5月,采集了淮河地区颍上八里河集群繁殖的夜鹭(Nycticorax nycticorax)和小白鹭(Egrettagarzetta)鸟卵共18枚,用原子吸收法测定了卵壳、内容物中重金属Cd、Pb、Cr的残留量。结果表明,所有卵壳样品中均检出一定水平的Cd、Pb和Cr残留量,夜鹭卵壳中重金属残留量为Pb>Cr>Cd,小白鹭卵壳中重金属残留量为Cr>Pb>Cd,卵壳中Pb和Cr残留量的种间差异都不显著,但Cd的种间差异显著;在2种鹭卵内容物中,Cr都被检出,在夜鹭卵内容物样品中,Pb只被部分检出,Cd在2种鹭卵内容物样品中都没有被检出,3种重金属在内容物中残留量的种间差异都不显著。2种鹭卵壳中Pb和Cd残留量极其显著地高于卵内容物,但Cr的这种残留分布上的差异不显著。本研究进一步证明卵壳可用作重金属污染物的指示物,监测和评价湿地生态系统中重金属的污染状况。