Mushroom worker's lung: Serologic reactions to thermophilic actinomycetes present in the air of compost tunnels

Vast numbers of spores of the thermophilic actinomycetesExcellospora flexuosa,Thermomonospora alba,T. curvata andT. fusca were collected from the air in fermentation tunnels during the spawning of mushroom compost, i.e. over 10⁹ CFU m^–3 of air. Five different genera of fungi, namely,Aspergillus,Aureobasidium,Cladosporium,Penicillium andScytalidium, were found at only 10³ CFU m^–3 of air.Agaricus bisporus, used for spawning, was absent. Sera of 10 mushroom growers affected by Mushroom Worker's Lung (MWL) were tested by a qualitative dot-ELISA for antibodies against the spores of these micro-organisms. All 10 were positive for one or more of the actinomycetesE. flexuosa,T. alba,T. curvata andT. fusca. No antibodies were found againstStreptomyces thermovulgaris,Thermoactinomyces vulgaris andT. sacchari nor against the fungiAspergillus fumigatus,Penicillium brevicompactum,P. chrysogenum,Scytalidium thermophilum andTrichoderma viride. Sera of 11 of 14 workers engaged in routine spawning of compost in tunnels reacted positively with 1 or more of the actinomycetes. Their¹⁰log serum titres increased with the duration of employment to an upper limit of 2.5. The sera of 19 non-exposed individuals were negative. Because high numbers of spores ofE. flexuosa,T. alba,T. curvata andT. fusca were present in the air that was used for successful inhalation provocation of mushroom workers with MWL and because of the elevated serum titres of these workers, we presume these organisms to contribute in the occurrence of MWL.     

The fate of ‘biodegradable’ plastics in municipal leaf compost

Summary Blends of starch with polypropylene, starch with polyethylene, polycaprolactone with polyethylene, and a copolymer of -hydroxybutyrate and -hydroxyvalerate (PHB/V) were exposed to degrading leaves in a municipal leaf composting operation. Every month for 6 months, duplicate samples were analyzed for changes in weight and tensile properties, and many of these samples were further analyzed for changes in molecular weight and surface morphology. All results were compared to controls which were incubated for 6 months in moist, sterile leaves at a leaf compost temperature. Very little change was noted for any of the polyolefin blends over the 6-month period. In contrast, PHB/V samples showed massive deterioration with substantial weight loss. Although there was a decrease in molecular weight and a loss of tensile properties in leaf-exposed PHB/V films, the sterile control films also showed similar changes, but without weight loss. Of the microbial isolates from film surfaces, only fungi possessed PHB/V depolymerase activity.     

Contrasting soil microbial responses to fertilization and tillage systems in canola rhizosphere

Information regarding the simultaneous evaluation of tillage and fertilization on the soil biological traits in canola production is not available. Therefore, field experiments were conducted in 2007–2010 in a split plot based on randomized complete block design with three replications. Main plots consisted of conventional tillage (CT); minimum tillage (MT) and no tillage (NT). Six strategies of fertilization including (N₁): farmyard manure (cattle manure); (N₂): compost; (N₃): chemical fertilizers; (N₄): farmyard manure + compost; (N₅): farmyard manure + compost + chemical fertilizers and (N₆): control, were arranged in sub plots. Results showed that the addition of organic manure increased the soil microbial biomass. No tillage system increased microbial biomass compared to other tillage systems. The activities of all enzymes were generally higher in the N₄ treatment. The activity of phosphatase and urease tended to be higher in the no tillage treatment compared to the CT and MT treatments.     

Effect of fungal consortium and animal manure amendments on phosphorus fractions of paddy-straw compost

The study was conducted to reveal the type of phosphorus (P) fractions present in mature compost prepared by co-composting paddy straw (P.S) with cattle manure (CM), farm yard manure (FYM) and poultry manure (PM), each added separately as nitrogen (N) and P source. A consortium of phytate mineralizing fungi developed by including Aspergillus niger ITCC 6719, Aspergillus flavus ITCC 6720 and Trichoderma harzianum ITCC 6721 was applied for recovery of P from plant and animal residues. Chemical evaluation of compost after 4 months of aerobic decomposition revealed that inoculation improved the sodium bicarbonate-extractable P content of CM and FYM supplemented P.S compost by 32.3% and 23.5% respectively compared with their respective un-inoculated control. However, the peak values for water soluble-P fractions were recorded in CM–straw compost followed by PM–straw compost. Fungal inoculation also improved the agronomic quality of PM–straw compost as the latter had the highest total P content and lowest C:N and E4/E6 ratio of 18:1 and 5.36:1 respectively. The recovery of organic P from agricultural residue has the potential to reduce the application of synthetic P fertilizer. P-enriched organic manure can offer potential environment and economic benefits to farmers under sustainable agriculture.     

Humic acids of different origin as modifiers of cadmium-ion chemistry: A spectroscopic approach to structural properties and reactivity

The physical-chemical properties of humic acid fractions (HA) derived from urban sludge (CUS) and cattle manure (CCM) composts, and agricultural soil (FS) fertilised with sludge for ten years, were initially explored by elemental analysis, UV-Vis, FTIR and fluorescence. These properties were then compared with reference HA of terrestrial (SO) and aquatic (SR). To correlate the chemical properties and the reactivity of these HA, the binding of Cd(II) was investigated by fluorescence quenching techniques (FQ). Indeed, fluorescence spectroscopy has been proven to be a powerful tool in discriminating the origin, chemical features and degree of humification of naturally occurring organic matter. The HA compost exhibited higher N content, smaller molecular size and lower aromaticity than the reference HA. In addition, the CUS sample showed clear evidence of impurities, most likely of microbial origin, which was not evident in the FS sample (i.e. during its further evolution/humification in soil). The quenching effect of Cd(II) is adequately described by a modified Stern-Volmer equation, which is based on two population fluorophores, one not being accessible. The resulting Cd-HA logK (conditional association constants) decreased in the order SO > CUS > FS > CCM > SR, thus reflecting the relative binding affinity. A similar order was found for the corresponding Cd(II) capacity, which is based on total Cd content in Cd-humate precipitates. Lastly, fluorescence analysis of the soluble and insoluble fractions clearly revealed the fluorophores most involved in the binding process. In conclusion, our work provides evidence that compost is a reservoir of “humic-like” material capable of compensating for any organic carbon deficit in soil and lessening the effect of inorganic pollutants.     

Biochemical characterization of a novel dual-function arabinofuranosidase/xylosidase isolated from a compost starter mixture

The gene encoding a glycoside hydrolase family 43 enzyme termed deAX was isolated and subcloned from a culture seeded with a compost starter mixed bacterium population, expressed with a C-terminal His₆-tag, and purified to apparent homogeneity. deAX was monomeric in solution and had a broad pH maximum between pH 5.5 and pH 7. A twofold greater k _cat/K _m for the p-nitrophenyl derivative of α-l-arabinofuranose versus that for the isomeric substrate β-d-xylopyranose was due to an appreciably lower K _m for the arabinofuranosyl substrate. Substrate inhibition was observed for both 4-methylumbelliferryl arabinofuranoside and the xylopyranoside cogener. While no loss of activity was observed over 4 h at 40°C, the observed t _1/2 value rapidly decreased from 630 min at 49°C to 47 min at 53°C. The enzyme exhibited end-product inhibition, with a K _i for xylose of 145 mM, 18.5 mM for arabinose, and 750 mM for glucose. Regarding natural substrate specificity, deAX had arabinofuranosidase activity on sugar beet arabinan, 1,5-α-l-arabinobiose, and 1,5-α-l-arabinotriose, and wheat and rye arabinoxylan, while xylosidase activity was detected for the substrates xylobiose, xylotriose, xylotetraose, and arabinoxylan from beech and birch. Thus, deAX can be classified as a dual-function xylosidase/arabinofuranosidase with respect to both artificial and natural substrate specificity.     

Characterization of humic materials extracted from hazelnut husk and hazelnut husk amended soils

This study was carried out to determine effects of composted hazelnut husk (CHH) on some chemical properties of soil and soil humic acid (HA). Compost application increases organic matter (OM) content of the soil considerably, OM value of 3.18% became 3.89% in 3 years time interval. Before application of compost, the soil pH was found to be 5.37, while after compost application it became 5.61. FTIR characteristics of humic acid/humic acid-like materials extracted from the original hazelnut husk, composted hazelnut husk and composted hazelnut husk amended soil have been investigated. C and O content of humic acid-like/humic acid materials were in the range of 41.4–50.8% and 37.8–50.5%, respectively. The N content of the humic acid/humic acid-like materials are in the expected range for humic materials which is 2–6%. Comparison of FTIR spectra of hazelnut husk and composted hazelnut husk humic acid-like fractions shows that both exhibit similar but not identical series of IR bands indicating the presence of the same functional groups in both samples. The only difference in the spectra seemed to be a decrement in the peak intensities of composted sample compared to uncomposted one. The similar differentiation of the intensities of IR bands of compost applied soil sample has also been observed. The FTIR spectral results show that the characteristics of composted material tend to become similar to that of soil humic acids characteristics in time.     

Acidic and alkaline bottom ash and composted manure blends as a soil amendment

Potential water quality impacts associated with using bottom ash (BA) and composted dairy manure (CM) as a soil amendment were evaluated in this study. Two column studies were conducted to evaluate three blends of acidic BA and CM (BA:CM, v/v) namely, B1_ac (95:5), B2_ac (90:10), and B3_ac (80:20) and three blends of alkaline BA and CM (BA:CM, v/v), namely, B1_al (95:5), B2_al (90:10), and B3_al (80:20) under constant head water table conditions. Samples from standing water (top) and leachate (bottom) were collected at weekly intervals until day 49 to evaluate the effects of different blend ratios and elapsed time on standing water and leachate chemical and physical properties. A higher CM content in both acidic and alkaline blends resulted in higher leachate concentrations for solids and nutrients tested in this study. Alkaline blends had higher standing water and leachate nutrients concentration compared to acidic blends. After day 28, standing water total dissolved solids (TDS) concentrations for all acidic blends was below the USEPA drinking water standard however, TDS value for alkaline blend was always below the standard. Similar trends were also observed for NO₃–N and phosphorus (P) concentrations for both blends. Based on these findings, it was concluded that acidic and alkaline blends B1_ac, B1_al, B2_ac and B2_al may be considered as a soil amendment material.     

Response of compost maturity and microbial community composition to pentachlorophenol (PCP)-contaminated soil during composting

Two composting piles were prepared by adding to a mixture of rice straw, vegetables and bran: (i) raw soil free from pentachlorophenol (PCP) contamination (pile A) and (ii) PCP-contaminated soil (pile B). It was shown by the results that compost maturity characterized by water soluble carbon (WSC), TOC/TN ratio, germination index (GI) and dehydrogenase activity (DA) was significantly affected by PCP exposure, which resulted in an inferior degree of maturity for pile B. DGGE analysis revealed an inhibited effect of PCP on compost microbial abundance. The bacteria community shifts were mainly consistent with composting factors such as temperature, pH, moisture content and substrates. By contrast, the fungal communities were more sensitive to PCP contamination due to the significant correlation between fungal community shifts and PCP removal. Therefore, the different microbial community compositions for properly evaluating the degree of maturity and PCP contamination were suggested.     

An assessment of pathogen removal during composting of the separated solid fraction of pig manure

The aim was to investigate pathogen survival during composting of pig manure solids with and without bulking agents in two trials of 56 days duration, each with four treatments. Salmonella was detected in the sawdust and straw bulking agents but was undetectable in the compost, except in one treatment at day 0. Enteric indicator organisms were reduced by day 7 (P<0.001) and were undetectable in the final compost, except for coliform which were present at 3.66-4.43 log?? CFU/g. Yeasts and moulds were reduced and aerobic spore-formers remained stable in one trial but both increased in the other (P<0.001). Bacillus licheniformis and Clostridium sporogenes were the predominant culturable spore-forming bacteria recovered. Microbial counts were influenced by the bulking agent but only at particular time points (P<0.05). Overall, the pig manure-derived compost complied with EU regulations for processed manure products, as E. coli and Enterococcus were below limits and it was Salmonella-free.