Comparative analysis of microbial diversity and bacterial seedling disease‐suppressive activity in organic‐farmed and standardized commercial conventional soils for rice nursery cultivation

The outbreak of rice plant diseases can be effectively suppressed in organic farming systems. However, the mechanisms of disease suppression by organic farming systems are not well understood. When Burkholderia‐infected rice seeds were sown and cultivated on nine organic‐farmed soils which were supplied by nine independent organic rice farmers or standardized commercial conventional soils, the emergence of bacterial seedling diseases was suppressed to equivalent degrees in nine organic‐farmed soils, whereas the diseases occurred in two commercial conventional soils. In any organic or commercial conventional soil sown with healthy rice seeds as a control, the diseases did not appear. Upon physicochemical analysis of the nine organic‐farmed soils, component common to these organic‐farmed soils seemed to not be directly associated with disease‐suppressive activity. However, microbiome analyses indicated that the bacterial population in these nine organic‐farmed soils was more diverse than those in commercial conventional soils. Intriguingly, the diverse bacterial population structures of organic‐farmed soils were preserved after irrigating and sowing rice seeds, but that of commercial conventional soils was clearly changed by them. Thus, organic‐farmed soils seem to maintain robust bacterial populations despite the irrigation and seedling growth. Indeed, pathogenic Burkholderia in infected rice seeds also did not proliferate in the seedling grown on organic‐farmed soils. Taken together, the common feature of organic‐farmed soils might be the correlation between bacterial seedling disease‐suppressive activity and higher robustness of the diversified microbiome.     

后河国家级自然保护区蛾类昆虫的季节多样性

后河国家级自然保护区位于湖北省与湖南省交界处,属于武陵山脉,与湖南壶瓶山国家级自然保护区相邻。该保护区自然环境优越,为昆虫繁衍提供了良好条件。为了研究后河国家级自然保护区蛾类昆虫的季节动态变化,在春、夏、秋三季,选取茅坪、湾潭和独岭为样地,采用灯光诱集方法,对后河国家自然保护区的蛾类昆虫群落多样性及季节变化进行了调查。采用α-多样性测度方法,分析了物种丰富度(S)、多样性指数(科、属及种级)(H)、均匀度指数(J)和优势度指数(D)。结果表明:后河国家自然保护区的蛾类昆虫分属21科173属227种,其中夜蛾科的丰富度最高达到62。随后是,尺蛾科和螟蛾科昆虫,它们的物种丰富度指数分别为为58和25。从各科个体数来看,尺蛾科昆虫最多有423头,灯蛾科排第二,有351头,第三的是夜蛾科昆虫有336头。蛾类昆虫的物种丰富度指数、多样性指数、均匀度指数及优势度指数随季节变化而变化。蛾类昆虫的物种丰富度指数以夏季最高,达到117;然后依次是秋季和春季。科级、属级和种级多样性指数也以夏季最高,分别为2.22、4.05和4.29。均匀度指数和优势度指数以春季最高,分为2.40和0.12。研究得出后河国家级自然保护区的生态环境好。     

Microbial diversity in marine biofilms along a water quality gradient on the Great Barrier Reef

Microbial communities are potential indicators for water quality as they respond rapidly to environmental changes. In the Whitsunday Islands, Australia, microbial biofilm communities from two offshore islands were compared to those from two inshore islands subjected to poor water quality. Biofilm community composition was characterized using three culture-independent molecular techniques. The clone libraries indicated high genetic diversity, with somewhat higher scores in the offshore sites (57%) compared to the inshore sites (41%). The majority of microbes in the biofilms were related to Alphaproteobacteria (39.8%), Gammaproteobacteria (14.1%), Bacteroidetes (13.2%), diatoms (8.3%) and Cyanobacteria (3.9%). Redundancy analysis (RDA) for the CARD-FISH data showed distinct microbial assemblages between offshore and inshore communities. Additionally, 5 out of 13 water quality parameters (DIN, Chla, POP, TSS and POC) explained a significant amount of variation in the microbial communities and high values of these were associated with inshore communities. Analysis of variance (ANOVA) indicated that Cyanobacteria (p = 0.01), Bacteroidetes (p = 0.04) and to some extent Alphaproteobacteria (p = 0.07), were significantly more abundant in the offshore biofilm communities. Principal Component Analysis (PCA) of DGGE data showed clear grouping of cyanobacterial communities into inshore and offshore communities. Reasons for community shifts in the bacterial lineages are currently not resolved. One possible causative factor may be that autotrophic primary producers are more dominant in offshore sites due to the higher light availability as well as the limitation by DIN. The trends found in this study are the bases for more detailed research on microbial indicator species for changes in water quality.     

With a Machete Through the Jungle: Some Thoughts on Community Diversity

This short communication includes comments on a single sentence cited from a recent paper by C. Ricotta. I discuss shortly the relationship between diversity and classification as well as the possibility of expressing diversity for continuous variables.Asimple example shows that the notion of diversity can be expanded to situations without an underlying classification. I suggest an evenness formula based on absolute deviations from the perfectly even distribution. If expressed for species data and multiplied by number of species in the community, this becomes an easily interpretable diversity measure. It is stressed that conventional diversity formulae cannot be informative on community structure, but there is a solution.     

Testing the intermediate disturbance hypothesis on species diversity in herbaceous plant communities along a human trampling gradient using a 4-year experiment in an old-field

The intermediate disturbance hypothesis predicts unimodal relationships between species diversity and disturbance frequency/intensity. To test this hypothesis, species diversity in herbaceous plant communities along a human trampling gradient was investigated by conducting a 4-year experiment in an old-field. In general, species richness (S), the Shannon–Weiner index (H) from plant cover data and species evenness (J) showed negative linear relationships with trampling frequency, in contrast to the prediction of the intermediate disturbance hypothesis. However, the significant relationships between trampling frequency and species diversity were not observed in the fourth year without J, which showed a unimodal relationship. In all experimental years, the number of new species that colonized the plots after 1year was small under frequent trampling, and the number of species lost from the plots was large under infrequent trampling. The relative number and the relative cover of perennial species increased as trampling frequency increased in the first and second years, but this pattern was not observed in the following years because the dominance of perennials further increased at decreasing frequencies of trampling. The similarity in the species composition and the yearly changes in species dominance indicated that trampling at higher frequencies eliminated more trampling-intolerant species only in the early years of the experiment. These results suggest that trampling mediated early changes in species diversity patterns, but competitive interactions were more important in the later experimental years. The time lag in the effects of trampling and competition appears to be attributable to the infrequent occurrence of unimodal patterns of species diversity.     

Spatial heterogeneity in soil nutrient supply modulates nutrient and biomass responses to multiple global change drivers in model grassland communities

Changes in the atmospheric concentration of carbon dioxide ([CO₂]), nutrient availability and biotic diversity are three major drivers of the ongoing global change impacting terrestrial ecosystems worldwide. While it is well established that soil nutrient heterogeneity exerts a strong influence on the development of plant individuals and communities, it is virtually unknown how nutrient heterogeneity and global change drivers interact to affect plant performance and ecosystem functioning. We conducted a microcosm experiment to evaluate the effect of simultaneous changes in [CO₂], nutrient heterogeneity (NH), nutrient availability (NA) and species evenness on the biomass and nutrient uptake patterns of assemblages formed by Lolium perenne, Plantago lanceolata and Holcus lanatus. When the nutrients were heterogeneously supplied, assemblages exhibited precise root foraging patterns, and had higher above‐ and belowground biomass (average increases of 32% and 29% for above‐ and belowground biomass, respectively). Nutrient heterogeneity also modulated the effects of NA on biomass production, complementarity in nitrogen uptake and below: aboveground ratio, as well as those of [CO₂] on the nutrient use efficiency at the assemblage level. Our results show that nutrient heterogeneity has the potential to influence the response of plant assemblages to simultaneous changes in [CO₂], nutrient availability and biotic diversity, and suggest that it is an important environmental factor to interpret and assess plant assemblage responses to global change.     

Species–energy relationships and habitat complexity in bird communities

Species–energy theory is a commonly invoked theory predicting a positive relationship between species richness and available energy. The More Individuals Hypothesis (MIH) attempts to explain this pattern, and assumes that areas with greater food resources support more individuals, and that communities with more individuals include more species. Using a large dataset for North American birds, I tested these predictions of the MIH, and also examined the effect of habitat complexity on community structure. I found qualitative support for the relationships predicted by the MIH, however, the MIH alone was inadequate for fully explaining richness patterns. Communities in more productive sites had more individuals, but they also had more even relative abundance distributions such that a given number of individuals yielded a greater number of species. Richness and evenness were also higher in structurally complex forests compared to structurally more simple grasslands when controlling for available energy.     

牦牛放牧率对小嵩草高寒草甸暖季草场植物群落组成和植物多样性的影响

两年的牦牛放牧试验结果表明:在暖季草场,随着放牧率的提高,禾草和莎草类功能群的盖度、生物量及其组成与高度减小,它们与放牧率呈显著的负相关 P<0.05 可食杂草和毒杂草类功能群的盖度、生物量及其组成与高度增加,它们与放牧率呈显著的正相关 P<0.05 各功能群的盖度与生物量之间是显著的正相关关系 P<0.05 .对照草地由于没有牦牛的采食,群落由少数优势种植物所统治,群落结构趋于简单,物种组成贫乏,物种多样性和均匀度指数最小;轻度放牧牦牛选择采食对植物群落的影响较小,群落的物种丰富度指数、均匀度指数和多样性指数均不高;中度放牧提高了资源的利用效率,增加了群落结构的复杂性,草地的物种丰富度指数、均匀度指数和多样性指数均最高,该结果支持 中度干扰理论 ;重度放牧由于牦牛采食过于频繁,改变了植物的竞争能力,导致植物种的均匀度下降,多样性减少.不同放牧率草地群落的物种数 S 、丰富度指数 Ma 、多样性指数 Shan-non-Wiener指数H′和Simpson指数D 、均匀度指数 Pielow指数J′ 的排序为:对照<轻度放牧<重度放牧<中度放牧,优势度指数 Berger-Parke指数 的变化趋势则与之相反.     

Variability of plant species diversity in Swedish natural forest and its relation to atmospheric deposition

Within a subprogram of Integrated Monitoring (IM), understorey vegetation in Swedish natural forests was observed at fifteen reference sites over the country for twelve seasons, 1982–1993. The main task of the subprogram was to assess the impact of atmospheric deposition, mainly sulphur and nitrogen, on natural vegetation through time. The present study is focused on the variability of plant species diversity at community level and the possible impact of sulphur and nitrogen deposition. Species richness, evenness and diversity varied greatly among the sites, and between years within each site. Regarding only coniferous forests the species richness was higher in the north than in the south. But the effects of site condition and atmospheric deposition were not clarified. Changes in species diversity through time differed from site to site. No overall temporal trend was found. The atmospheric deposition of sulphur and nitrogen demonstrated a clear geographical pattern being low in the north-west and high in the south-west. Sulphur deposition declined significantly in Southern Sweden during the period. We concluded that the species diversity of understorey vegetation at the Swedish IM sites was not significantly influenced by atmospheric deposition. The changes observed are explained as natural processes.