人类口腔小生境微生物的多样性

本文论述了人类口腔中微生物的物种多样性,口腔小生境的复杂性与微生物多样性的关系,以及口腔中微生物变化与人类疾病和健康的关系。     

The Evolution of MHC Diversity by Segmental Duplication and Transposition of Retroelements

Sequence analysis of a 237 kb genomic fragment from the central region of the MHC has revealed that the HLA-B and HLA-C genes are contained within duplicated segments peri-B (53 kb) and peri-C (48 kb), respectively, and separated by an intervening sequence (IF) of 30 kb. The peri-B and peri-C segments share at least 90% sequence homology except when interrupted by insertions/deletions including Alu, L1, an endogenous retrovirus, and pseudogenes. The sequences of peri-B, IF, and peri-C were searched for the presence of Alu elements to use as markers of evolution, chromosomal rearrangements, and polymorphism. Of 29 Alu elements, 14 were identified in peri-B, 11 in peri-C, and 4 in IF. The Alu elements in peri-B and peri-C clustered phylogenetically into two clades which were classified as ``preduplication' and ``postduplication' clades. Four Alu J elements that are shared by peri-B and peri-C and are flanked by homologous sequences in their paralogous locations, respectively, clustered into a ``preduplication' clade. By contrast, the majority of Alu elements, which are unique to either peri-B or peri-C, clustered into a postduplication clade together with the Alu consensus subfamily members ranging from platyrrhine-specific (Spqxcg) to catarrhine-specific Alu sequences (Y). The insertion of platyrrhine-specific Alu elements in postduplication locations of peri-B and peri-C implies that these two segments are the products of a duplication which occurred in primates prior to the divergence of the New World primate from the human lineage (35–44 mya). Examination of the paralogous Alu integration sites revealed that 9 of 14 postduplication Alu sequences have produced microsatellites of different length and sequence within the Alu 3′-poly A tail. The present analysis supports the hypothesis that HLA-B and HLA-C genes are products of an extended segmental duplication between 44 and 81 million years ago (mya), and that subsequent diversification of both genomic segments occurred because of the mobility and mutation of retroelements such as Alu repeats. Received: 21 May 1997 / Accepted: 9 July 1997     

Keep all the pieces: Systematics 2000 and world conservation

Conserving biological diversity requires a major effort in conducting survey and inventories, establishing priorities, selecting protected areas, managing resources and monitoring the effects of management. Systematics has an important contribution to make to each of these five major activities. Further, the new Convention on Biological Diversity requires systematics information to support action under virtually all of its substantive conservation and sustainable use articles. It seems apparent that large reference collections contribute directly to development, and development assistance agencies should recognize that investing in maintaining these collections is a legitimate form of development assistance.     

Diversity concept in ecology

Hierarchy of systems organization is used as a framework in advancing methodological guidelines for posing correct questions related to ecological diversity.Diversity if defined in general terms as a property of a set of elements dependent on and determines: by the epistemological perspective. Ontological diversity, because it is indefinite, is regarded as unmeasurable.Ecological diversity — be it species, spatial, reproductive or trophic, is a particular case of diversity of matter and must be precisely defined on the studied level of system organization.Diversity measurements combining more than one level of organization are information-void, for data become irretrievable as a result of such a treatment.Hypotheses explaining diversity sources are briefly surveyed. An integrated model interrelating them is constructed as a result of some basic views on the structure of matter coupled with the empirical knowledge of involved factors. The model reflects hierarchies of systems, their dynamics, and the complexities of factors affecting diversity. The model's properties suggest that it is conceptually related to an imaginary model of organization of ecological systems. Parameters recognized as invariant components of this complexity are: habitat differentiation, ecological specialization of species, ambiental changes, and integration of this system.Finally, it is shown that the peculiar shape of the species abundances curve is a necessary consequence of stratification of the system structure, which is an intrinsic attribute of hierarchical organization.     

Factor analysis in clusterbean (Cyamopsis tetragonoloba (L.) Taub)

Summary The pattern of diversity in forty genotypes of clusterbean (Cyamopsis tetragonoloba (L.) Taub) was analysed using the centroid method of factor analysis based on nine characters. Three factors were found to adequately account for most of the intercorrelations in the four environments. Branches, clusters, pods and seed yield/plant could be grouped as productivity factors; days to flowering, maturity and plant height as growth factors; seeds/pod and gum content as economic factor. Interestingly, the constitution of the factors were the same in all the environments. The loadings on the economic factors were relatively unstable, whereas the loadings on productivity and growth factors were stable. It is concluded that productivity and growth factors play a pivotal role towards diversity in clusterbean. The results of factor analysis provides confirmatory evidence of diversity in clusterbean, which was earlier studied by using generalized distance, and thus proves the adequacy of the centroid method in biological investigations.     

Succession,diversité et amplitude de niche dans les påturages du centre de la péninsule ibérique

Some diversity and niche amplitude parameters were applied to rangeland pastures of the Central Iberian Peninsula and to their succession stages after the periodical ploughing typical of the traditional management of these areas. Four different slopes within a large area of undulating terrain were selected for the monitoring of succession as they contained the characteristical geomorphological pattern of the area (denudation, transport and accumulation sectors).If we consider the total entropy theorem, H (E.P.)=H(E)+H(P/E), the total entropy of the slope H(E.P) and the entropy of species H(E) increase as succession progresses. As the value of the entropy of the sampling plots conditioned by the species H(P/E) is affected by the number of plots utilized, we employed the expression A=H(P/E)/log₂ number of plots, similar to Pielou's index for niche amplitude, W=H(P/E)/H(P).This values decreases with succession, indicating that plant species tend to occupy more definite sectors along the slope. The number of low entropy species H(P/E) _i or specialist species, confined to narrow sectors also increases. When computed separately within the different sectors niche amplitude results in small values for the low slope regions (accumulation sector). This effect becomes more pronounced when succession advances.

Nous remercions le Conseil d'Administration de La Paranza, propriétaire du Castillo de Vañuelas, et particulièrement Mrs. C. Hernandez-Ros et J. A. Léon-Vrquijò, pour les faeilités qu'ils ont données à cette équipe durant la réalisation de ce travail.     

Structure and seasonal dynamics of humid tropical grasslands in Meghalaya,India

Abstract. Four humid grassland communities at three different locations in Meghalaya, India were analysed during 1988 and 1989 for species and life-form composition, diversity and dominance in relation to altitude, soil and prevailing disturbances. Due to the adverse interactive influences of exceptionally high annual rainfall (> 10 000 mm), topography and human interference on soil fertility, the grassland at Cherrapunji, at 1300 m altitude, had a low species diversity (H'= 1.74) and was dominated by three perennial grass species. Similar grasslands, at both higher and lower altitudes on fertile soil and with lower rainfall (ca. 2000 mm), showed higher diversity values (H'= 2.28 at Burnihat and 2.31 at Upper Shillong). The proportion of perennial species and chamaephytes increased with elevation. At the high altitude site a grassland under short-term protection from fires and grazing had a higher species richness, density and basal cover than an unprotected grassland. All grasslands show a clear seasonality, albeit with different patterns, with a maximum in density and basal cover in August. The differences in structure and seasonality are discussed in terms of different levels of stress.     

Patterns of abundance variation in reef fishes near an artificial reef at Guam

Synopsis Development of the fish community on a submerged 16 m barge and variation in fish abundance on nearby transects were surveyed twice monthly for twenty months. A steady increase in abundance was observed for certain fishes on the barge, whereas a few species exhibited distinct seasonal variation on both the barge and transects. Most of the seasonal species settled between March and May.Some seasonal species appeared to be site selective in their settlement and consequently settled juveniles were clumped in their distribution. An abundance of preferred topographical features may be why settlement was relatively high at the study site and indirectly why predators became significantly (r₃ = 7.67^***, N = 37) more abundant at the study area during the months of maximum prey settlement. Concurrent settlement of several species during the same few months may be important because juveniles become an abundant food source to predators during those few months only. Periodic swamping of predators by abundant juvenile prey may improve the chances for individuals of rarer prey species to be overlooked and therefore be succesfully recruited.     

Diversity and stability in garrigue ecosystems after fire

Summary Vegetation dynamics after fire was studied in six communities in Bas-Languedoc (Southern France). 47 plots were observed by means of a permanent transect for ten years.In the first part, we describe floristic richness, species fugacity and the way by which, the terminal community (as defined by the last observation) appears. The dynamics of all these communities follows a simple and general model: floristic richness reaches its maximum during the first two years after a fire, then decreases and becomes stable. Fugacity follows a similar model, whereas the mergence of the terminal community is rapid: one year after fire 70% of the plots have already acquired 75% of the species of the terminal community. There is no succession (in the general sense of the word), but a progressive reappearance of the species belonging to the original community.In the second part, we study floristic similarities between our plots and corresponding associations as described in literature. It appears that after a fire the floristic diversity of the landscape remains high; while the communities rapidly reach a relative maturity.In the study area fire seems to be a rather superficial phenomenon; it does not lead to an important modification of the community dynamics, because probably the most frequent species in Bas-Languedoc developed adaptations to withstand fire.     

The influence of ants on patterns of colonization and establishment within a set of coexisting lycaenid butterflies in a south-east Asian tropical rain forest

In Peninsular Malaysia ten species of lycaenid butterflies use leaf flushes or inflorescences of the legume tree Saraca thaipingensis as larval hostplant. Resource partitioning among these species is regulated by a complex mixture of patterns of interaction with ants. Females of obligately myrmecophilous species lay their eggs exclusively on trees colonized by their specific host ants. On trees colonized by weaver ants, only specialist mutualists adapted to these territorial ants are able to survive, while larvae of other species are killed. The formicine ant Cladomyrma petalae, which inhabits hollow twigs of the myrmecophytic hostplant, likewise precludes oviposition by female butterflies. Lycaenid larvae confronted with this ant species never survive, but one concealed feeding species (Jamides caeruleus) escapes removal due to the cryptic life-habits of the larvae. Two facultative myrmecophiles associate in a mutualistic way with a wide and largely overlapping range of ant genera which forage at the extrafloral nectaries of leaf flushes. One species (Cheritra freja) is not myrmecophilous, but is tolerated by all but the most territorial ants. Ant-dependent hostplant selection and egg-clustering characterize the obligate mutualists, whereas facultative myrmecophiles and the non-myrmecophile distribute their eggs singly over appropriate hostplants. Signals mediating caterpillar-ant communication are highly specialized in one obligate myrmecophile (Drupadia theda), but rather unspecific in four other species tested. Altogether our observations indicate that colonization and establishment of lycaenid butterflies on S. thaipingensis trees are governed by specializations as well as opportunistic use of resources (ants and hostplant parts). Therefore, the diversity of this species assemblage is maintained by deterministic as well as stochastic factors.