Between-species correlations in the number of migrants at Ulmeth?chi (Switzerland)

We analysed the number of autumn migrants at a bird ringing station over 41 years in the Jura mountains of Switzerland. For 12 irruptive or potentially irruptive bird species, the correlations between their numbers per year were calculated and the species were clustered accordingly. We found high correlations in the number of migrants between the Coal Tit Periparus ater, Great Tit Parus major and Blue Tit Cyanistes caeruleus. Most correlations of passage number between species pairs changed dramatically over time. Only Blue Tit and Coal Tit showed continuously high correlation in this respect. The variation and changes over time in between-species correlations in the number of migrants needs more attention.     

听觉诱发脑电小波分量的混沌研究——婴儿痉挛症认知功能障碍的机制探讨

通过对婴幼儿期难治性癫痫———婴儿痉挛症(infantile spasms, IS)听觉诱发脑电细貌混沌特性的研究,探讨与IS相伴的认知功能障碍的发生机制。研究方法是分别记录IS组及正常对照组对象的听觉诱发脑电,经Mexihat连续小波变换后,分别计算信号各尺度小波分量的相关维数。结果表明IS组与正常对照组的各小波分量相关维数的差别主要表现在小波的第3尺度分量上(频带范围是32~64 Hz,主要为γ频带范围),在这个尺度上正常组相关维数明显低于IS组(P<0.05)。相关维数的降低意味着大脑活动自由度的减少,表明大脑的各单元耦合加强。因为正常组脑干内信息传递通道完好,使得大脑各个单元之间的信息耦合较强; IS组则由于脑干功能的异常,存在神经信息传递障碍,进而影响到脑干及其与大脑各个局部之间的信息耦合。小波第3尺度处于较高频率范围(γ频带范围),而在大脑皮层上的基频信号与听觉调频信号经加工后所产生的神经信号正在这一频率范围,且这一信号与大脑高级认知功能密切相关。因此,IS患者γ频带细貌信号的相关维数高于正常值,能够解释IS认知功能发生障碍的原因。     

Effect of single-species and mixed-species leaf leachate on bacterial communities in biofilms

Bacterial communities in two shallow eutrophic aquatic ecosystems (eastern China) were studied using culture-dependent methods, and their correlations with the other water parameters were analyzed. Although the values of the comprehensive trophic state index in Xizi Lake and Hangzhou Canal were almost identical, the abundances of cultivable bacterial communities, such as protein-hydrolyzing bacteria (PHB), fecal coliforms (FC), nitrogen-utilizing bacteria, phosphate-mineralizing bacteria, and cellulose-decomposing bacteria (CDB), differed significantly. They were much less in Xizi Lake than in Hangzhou Canal. Correlation analyses indicated that the abundances of physiological groups of bacteria were determined mainly by the biomasses of phytoplankton and zooplankton, rather than by the utilized substrates. Xizi Lake was an algae-dominated aquatic ecosystem, a situation that mainly arose from the influx of inorganic nutrients, and the Hangzhou Canal was bacteria-dominated due to the influx of organic sewage. Molecular characterization and phylogenetic analysis of isolates showed that there were 6 phylogenetic lineages out of 15 isolates screened from Xizi Lake, including γ-proteobacteria (5), β-proteobacteria (3), α-proteobacteria (2), actinobacteria (1), firmicutes (4), and bacteroidetes (1). While in Hangzhou Canal there were only 4 bacterial groups among 22 isolates, γ-proteobacteria comprised about 82%, α-proteobacteria made up 9%, firmicutes and bacteroidetes made up only 4.5%, respectively, and no β-proteobacteria were found. Enterobacteriaceae were the principal bacteria components in the two aquatic ecosystems, especially in the sewage-polluted Hangzhou Canal. It can be concluded preliminarily that the bacterial diversity in Xizi Lake is richer than that in Hangzhou Canal. Handling editor: J. Padisak     

广西木论自然保护区铁榄群落主要乔木种群格局的分形特征

为了揭示种群空间分布特征随尺度的变化规律,探讨不同种群对空间资源的占据能力和生态适应能力及分形差异,采用计盒维数、信息维数和关联维数对木论自然保护区铁榄群落主要乔木种群格局特征进行了研究。结果表明,优势种铁榄（Sinosideroxylon pedunculatum）、东女贞（Ligustrum japonicum）、小栾树（Boniodendron minius）、稀有濒危种掌叶木（Handeliodendron bodinieri）、青檀（Pteroceltis tatarinowii）5个种群在相应的尺度具有明显的分形特征;计盒维数和信息维数大小顺序一致,均为：铁榄〉东女贞〉小栾树〉掌叶木〉青檀;在5个种群中,铁榄计盒维数为1．7763最大,接近2,对空间环境的占据能力最强,信息维数（1．7206）也最大,个体聚集强度强,在群落中处于绝对优势地位,青檀计盒维数（0．8316）和信息维数（0．8990）最小,对环境的占据利用能力弱,个体聚集程度整体较弱,在群落中处于伴生地位;在0．5～50m的尺度上,关联维数大小顺序为：铁榄（1．7314）〉东女贞（1．6688）〉小栾树（1．6050）〉青檀（0．7868）,而掌叶木只有在大的尺度上才出现关联,且关联较强。3个分形维数大小的不同组合,能够全面揭示不同种群格局特征和种群在群落中所处地位的差异。     

New pulsed EPR methods and their application to characterize mitochondrial complex I

Electron Paramagnetic Resonance (EPR) spectroscopy is the method of choice to study paramagnetic cofactors that often play an important role as active centers in electron transfer processes in biological systems. However, in many cases more than one paramagnetic species is contributing to the observed EPR spectrum, making the analysis of individual contributions difficult and in some cases impossible. With time-domain techniques it is possible to exploit differences in the relaxation behavior of different paramagnetic species to distinguish between them and separate their individual spectral contribution. Here we give an overview of the use of pulsed EPR spectroscopy to study the iron-sulfur clusters of NADH:ubiquinone oxidoreductase (complex I). While FeS cluster N1 can be studied individually at a temperature of 30 K, this is not possible for FeS cluster N2 due to its severe spectral overlap with cluster N1. In this case Relaxation Filtered Hyperfine (REFINE) spectroscopy can be used to separate the overlapping spectra based on differences in their relaxation behavior.     

中国水稻微核心种质不同生育时期耐冷性鉴定及其相关分析

以204份中国水稻微核心种质为试验材料,进行了水稻发芽期、芽期、幼苗期、孕穗期等耐冷性鉴定及其相关性分析。结果表明,水稻各生育时期耐冷性在籼粳亚种间、各种质之间存在明显的差异。粳稻种质的耐冷性明显强于籼稻种质,但籼稻种质中也存在耐冷性较强的种质。高阳淀稻大红芒、肥东塘稻、木樨球、卫国、兴国、山酒谷、中花8号等粳稻种质和包选21号、红米三担白、寸谷糯、红谷等籼稻种质在水稻各生育时期均表现较强的耐冷性,在水稻耐冷性育种及耐冷基因发掘研究中应加以利用。自然低温和冷水胁迫下水稻结实率与低温下发芽率呈显著或极显著正相关,而与死苗率呈显著负相关,即低温下发芽期耐冷性和芽期耐冷性强的水稻种质一般表现为较强的孕穗期耐冷性。认为低温下发芽率和芽期低温处理后的死苗率可以作为孕穗期耐冷性早期鉴定的间接指标。     

癌症相关的DNA甲基化连锁区域

DNA甲基化是重要的表观遗传标记之一,在转录调控中起直接作用。DNA甲基化的异常与癌症的发生发展密切相关。高通量测序使得在单碱基分辨率下检测全基因组的DNA甲基化水平成为可能。本文基于临近CpGs位点甲基化水平的相关性挖掘DNA甲基化连锁区域。结果发现DNA甲基化连锁区域的甲基化水平和模式在癌症中存在异常,而且显著富集到分化/发育相关的生物学功能。DNA甲基化连锁区域的挖掘有助于对具有生物学功能的表观遗传标记的进一步理解,有助于对癌症诊断的表观遗传标记的挖掘。     

XIAP及survivin 在原发性肝细胞癌组织中的表达及其相关性研究

目的：探讨X 连锁凋亡抑制蛋白（XIAP）和survivin 在原发性肝细胞癌中的表达及两者的相关性。方法：选取本院收治的60 例原发性肝细胞癌患者,应用免疫组织化学染色的方法对肝癌组织及癌旁组织中的XIAP及survivin 的表达进行检测。结果：经 比较,肝癌组织中XAIP 及survivin 的阳性率均显著高于癌旁组织,差异有统计学意义。XIAP 和survivin 的表达强度与肿瘤的大 小无关,但随肿瘤的分化程度的降低而升高,且不同分化程度之间差异有统计学意义;XIAP 和survivin 存在正相关关系。结论： XIAP与Survivin 在肿瘤组织中的高表达在促进肿瘤发生、增殖、转移以及耐药,并且能够降低肿瘤的分化程度,增加肝癌的恶性 程度。此外,两者可能存在协同作用,但两者的相关性及作用机制仍需进一步探讨。     

Identification of metabolites from 2D 1H-13C HSQC NMR using peak correlation plots

Background

Identification of individual components in complex mixtures is an important and sometimes daunting task in several research areas like metabolomics and natural product studies. NMR spectroscopy is an excellent technique for analysis of mixtures of organic compounds and gives a detailed chemical fingerprint of most individual components above the detection limit. For the identification of individual metabolites in metabolomics, correlation or covariance between peaks in ¹H NMR spectra has previously been successfully employed. Similar correlation of 2D ¹H-¹³C Heteronuclear Single Quantum Correlation spectra was recently applied to investigate the structure of heparine. In this paper, we demonstrate how a similar approach can be used to identify metabolites in human biofluids (post-prostatic palpation urine).

Results

From 50 ¹H-¹³C Heteronuclear Single Quantum Correlation spectra, 23 correlation plots resembling pure metabolites were constructed. The identities of these metabolites were confirmed by comparing the correlation plots with reported NMR data, mostly from the Human Metabolome Database.

Conclusions

Correlation plots prepared by statistically correlating ¹H-¹³C Heteronuclear Single Quantum Correlation spectra from human biofluids provide unambiguous identification of metabolites. The correlation plots highlight cross-peaks belonging to each individual compound, not limited by long-range magnetization transfer as conventional NMR experiments.

Electronic supplementary material

The online version of this article (doi:10.1186/s12859-014-0413-z) contains supplementary material, which is available to authorized users.     

Increase trend of correlation and phase synchrony of microwire iEEG before macroseizure onset

Micro/macrowire intracranial EEG (iEEG) signals recorded from implanted micro/macroelectrodes in epileptic patients have received great attention and are considered to include much information of neuron activities in seizure transition compared to scalp EEG from cortical electrodes. Microelectrode is contacted more close to neurons than macroelectrode and it is more sensitive to neuron activity changes than macroelectrode. Microwire iEEG recordings are inevitably advantageous over macrowire iEEG recordings to reveal neuronal mechanisms contributing to the generation of seizures. In this study, we investigate the seizure generation from microwire iEEG recordings and discuss synchronization of microwire iEEGs in four frequency bands: alpha (1−30 Hz), gamma (30−80 Hz), ripple (80–250 Hz), and fast ripple (>250 Hz) via two measures: correlation and phase synchrony. We find that an increase trend of correlation or phase synchrony exists before the macroseizure onset mostly in gamma and ripple bands where the duration of the preictal states varied in different seizures ranging up to a few seconds (minutes). This finding is contrast to the well-known result that a decrease of synchronization in macro domains exists before the macroseizure onset. The finding demonstrates that it is only when the seizure has recruited enough surrounding brain tissue does the signal become strong enough to be observed on the clinical macroelectrode and as a result support the hypothesis of progressive coalescence of microseizure domains. The potential ramifications of such an early detection of microscale seizure activity may open a new window on treatment by making possible disruption of seizure activity before it becomes fully established.