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11.
免疫细胞浸润对癌症的诊断与预后有着重要意义。文中收集TCGA数据库已收录的非小细胞肺癌肿瘤与正常组织基因表达数据,利用CIBERSORT工具得到22种免疫细胞占比来评估免疫细胞浸润情况。以22种免疫细胞占比为特征,用机器学习方法构建了非小细胞肺癌肿瘤与正常组织的分类模型,其中随机森林方法构建的模型分类效果AUC=0.987、敏感性0.98及特异性0.84。并且用随机森林方法构建的肺腺癌和肺鳞癌肿瘤组织分类模型效果AUC=0.827、敏感性0.75及特异性0.77。用LASSO回归筛选22种免疫细胞特征,保留8种强相关特征组成的免疫细胞评分结合临床特征构建了非小细胞肺癌预后模型。经评估及验证,预后模型C-index=0.71并且3年和5年的校准曲线拟合良好,可以对预后风险度进行准确预测。本研究基于免疫细胞浸润所构建的分类模型与预后模型,旨在对非小细胞肺癌的诊断与预后研究提供新的策略。 相似文献
12.
Ants are dominant in tropical forests and many species nest in hollow cavities. The manner in which species are vertically stratified in these complex habitats is not known, with lack of nest sites being proposed to limit ant populations. Here, we assess ant community stratification and nest site limitation in a lowland rainforest in New Guinea using experimental addition of artificial bamboo nests of two cavity sizes (small: ~12 mm large: ~32 mm diameter) placed at ground level, in the understorey, and in the canopy. We also conducted a pilot experiment to test the utility of nest translocation. Nests were checked for occupancy after 10 weeks and half of the occupied nests were then translocated between forest plots, while keeping same vertical position. Occupancy of small nests was much higher in the understorey and canopy than at ground level (~75% vs. ~25%). Translocation was successful, as a majority of nests was inhabited by the same species before and after translocation and there was no impact of translocation to a different plot compared to the control, except for a reduction in colony size at ground level. Our experiment demonstrates a vertical stratification in community composition of ants nesting in hollow dead cavities and shows that these ants are more nest site limited in the higher strata than at ground level. Use of small artificial cavities has great potential for future experimental studies, especially for those focused on arboreal ants, as occupancy is high and translocation does not negatively affect their colony size. Abstract in Tok Pisin is available with online material. 相似文献
13.
14.
Pernilla Christensen Frauke Ecke Per Sandström Mats Nilsson Birger Hörnfeldt 《Population Ecology》2008,50(2):169-179
There has been a long-term decline in spring and fall numbers of Clethrionomys rufocanus in boreal Sweden in 1971–2005. Previous studies on permanent sampling plots in the centre of 2.5 × 2.5 km landscapes suggested
that habitat fragmentation (sensu destruction) could have contributed to the decline. Therefore, we tested these findings
in a field study and compared trapping results on the central sampling plots of landscapes with a low degree of fragmentation
(LDF) and of “hot spot” type with trapping results in managed forest landscapes with a high degree of fragmentation (HDF).
We predicted that C. rufocanus would be more common on the LDF plots. We used our permanent plots supplemented with a new sample of plots, mainly of the
rare LDF type, inside or just outside the long-term study area. Very few voles were trapped on both plot types, and no difference
was found. However, a subsequent pilot study with trapping in a national park with large areas of pristine, unfragmented forest
yielded more voles than in the managed, more fragmented, areas. Consequently, the initial field study data and some other
recent data were also re-analysed from a “local patch quality” perspective. This alternative approach revealed the positive
importance of large focal patches of forest >60 years old and their content of old-growth (pine) forest (>100 years). Interestingly,
at the landscape level, the frequency distribution of patches of forest >60 years old, old-growth (>100 years), and especially
of old-growth pine forest (>100 years), relative to the properties of plots with C. rufocanus, suggested that there are few forest patches left that are suitable for C. rufocanus. Our current results suggest that habitat fragmentation cannot be excluded as a contributing cause to the long-term decline
of C. rufocanus in boreal Sweden. 相似文献
15.
We have compared the species richness of medicinal plants and the differential patterns of use amongst settlements in the
Andean communities of Northwest Argentina which have differing levels of isolation. About 259 ethnoespecies, belonging to
74 plant families, were included, representing between 70 and 80% of the total estimate. The results indicate that Coronopus didymus is the most relevant and important species. The method of use of medicinal plants and the ailments treated by rural doctors compared to those of the layperson is different. Native and exotic plants are used differently according to the body system
treated. There are some relationships between internal and external use and body systems and recipes. The greater medicinal
species richness found in the less isolated locations is due to external enriching cultural influences. 相似文献
16.
17.
Canopy closure estimation in a temperate forest using airborne LiDAR and LANDSAT ETM+ data 下载免费PDF全文
《植物生态学报》2016,40(2):102
Aims Forest canopy closure is one of the essential factors in forest survey, and plays an important role in forest ecosystem management. It is of great significance to study how to apply LiDAR (light detection and ranging) data efficiently in remote sensing estimation of forest canopy closure. LiDAR can be used to obtain data fast and accurately and therefore be used as training and validation data to estimate forest canopy closure in large spatial scale. It can compensate for the insufficiency (e.g. labor-intensive, time-consuming) of conventional ground survey, and provide foundations to forest inventory.Methods In this study, we estimated canopy closure of a temperate forest in Genhe forest of Da Hinggan Ling area, Nei Mongol, China, using LiDAR and LANDSAT ETM+ data. Firstly, we calculated the canopy closure from ALS (Airborne Laser Scanning) high density point cloud data. Then, the estimated canopy closure from ALS data was used as training and validation data to modeling and inversion from eight vegetation indices computed from LANDSAT ETM+ data. Three approaches, multi-variable stepwise regression (MSR), random forest (RF) and Cubist, were developed and tested to estimate canopy closure from these vegetation indices, respectively.Important findings The validation results showed that the Cubist model yielded the highest accuracy compared to the other two models (determination coefficient (R2) = 0.722, root mean square error (RMSE) = 0.126, relative root mean square error (rRMSE) = 0.209, estimation accuracy (EA) = 79.883%). The combination of LiDAR data and LANDSAT ETM+ showed great potential to accurately estimate the canopy closure of the temperate forest. However, the model prediction capability needs to be further improved in order to be applied in larger spatial scale. More independent variables from other remotely sensed datasets, e.g. topographic data, texture information from high-resolution imagery, should be added into the model. These variables can help to reduce the influence of optical image, vegetation indices, terrain and shadow and so on. Moreover, the accuracy of the LiDAR-derived canopy closure needs to be further validated in future studies. 相似文献
18.
A rapid altitudinal range expansion in the pine processionary moth produced by the 2003 climatic anomaly 总被引:2,自引:0,他引:2
ANDREA BATTISTI MICHAEL STASTNY† EMILIANO BUFFO STIG LARSSON‡ 《Global Change Biology》2006,12(4):662-671
Climatic anomalies may produce, or accelerate, geographic range expansions of species limited by temperature or other climatic variables. Most such expansions are only temporary, before the prevailing climatic conditions drive the founder populations extinct. In contrast, here, we report a recent rapid shift of the range limit during the record hot summer of 2003 in southern Europe that has the potential to be both permanent, and to have important implications on species range dynamics in general. The winter pine processionary moth (Thaumetopoea pityocampa), an important pine defoliator whose larvae feed in colonies during the winter, is limited in its distribution by winter temperatures. In the last three decades, warmer winters have led to a gradual but substantial expansion of its range both latitudinally and altitudinally. In the summer of 2003, T. pityocampa underwent an extraordinary expansion to high elevation pine stands in the Italian Alps; its altitudinal range limit increased by one third of the total altitudinal expansion over the previous three decades. In an experiment, we found flight activity of newly emerged females to increase with temperature. By determining a threshold temperature for flight take‐offs under controlled conditions, we calculated that the nights above the threshold temperature were over five times more frequent, and considerably warmer, at the range limit in 2003 than in an average year. We therefore attribute the colonization of extreme, high‐elevation sites to increased nocturnal dispersal of females during the unusually warm night temperatures in June – August 2003. Importantly, the colonies established at extreme sites survived the winter and produced offspring in 2004, although the range did not expand further because of low night temperatures that year. We discuss several life‐history characteristics of T. pityocampa that maximize the likelihood of population persistence at the new range limit. As global warming continues and climatic anomalies are predicted to become more frequent, our results draw attention to the importance of extreme climatic events in the range formation of phytophagous insects. 相似文献
19.
Joachim Offenberg Sopon Havanon Sanit Aksornkoae Donald J. Macintosh Mogens Gissel Nielsen 《Biotropica》2004,36(3):344-351
Ants of the genus Oecophylla are predators of other insects and are able to protect a variety of terrestrial plants against pest insects; however, observations on the ecology of these ants in mangrove forests are lacking. General observations on the ecology of Oecophylla smaragdina were carried out in a Thai mangrove forest to determine if these ants can protect their host plants in less favorable mangrove habitats. Leaf herbivory and the density of O. smaragdina ants were measured on Rhizophora mucronata trees at two sites. The results showed a negative correlation between ant density and herbivory. At both sites, the mean percent damaged leaf area was more than four times higher on trees without ants compared to “ant‐trees.” A significant negative correlation was found between tree mean percent leaf damage and the density of ants on the tree. Furthermore, on trees with ants, there was less herbivory on leaves close to ant nests compared to other leaves on the tree. Most damage was caused by chrysomelid beetles (62%) and sesarmid crabs (25%) and both types of herbivory were significantly reduced on ant‐trees. 相似文献
20.
Mississippi Kites (Ictinia mississippiensis) are trans‐equatorial, long‐distance migrants that breed in North America and overwinter in South America. Information about their migration routes and winter distribution in the Neotropics is mostly anecdotal. By compiling records of Mississippi Kites in South America from the literature and previously unpublished observations (1904–2010), we identified 96 locality records (a location where a flock or individual was recorded) and 146 independent records of flocks (observations of flocks irrespective of year, location, or time of year). Our locality records included 38 (39%) during southbound migration (1 September–30 November), 18 (19%) during northbound migration (15 February–30 April), 38 (39%) during austral summer (1 December–14 February), and two (3%) during austral winter (1 May–31 August). Most Mississippi Kites (84, 88%) were observed between the 11°S and 32°S latitudinal band in central South America. Of our independent records of flocks, 133 (92%) were observed between 11°S and 32°S, 12 (7%) between 11°N and 10°S, and a lone vagrant (1%) between 33°S and 43°S. Our data suggest that Mississippi Kites are common and widespread in the austral summer between 11°S and 32°S in central South America. On the basis of the number of locality records (N = 52, 54%) and number of flocks of Mississippi Kites observed between 22°S and 32°S (N = 61, 42%), the Chaco forest appears to be the main wintering grounds for the species. However, additional monitoring is needed to further test this hypothesis. A large portion of Chaco habitat is now under cultivation, and how this habitat transformation might influence the annual cycle of Mississippi Kites is unknown. 相似文献