Interface processes between protected and unprotected areas: A global review and ways forward

Land‐use changes and the expansion of protected areas (PAs) have amplified the interaction between protected and unprotected areas worldwide. In this context, ‘interface processes' (human–nature and cross‐boundary interactions inside and around PAs) have become central to issues around the conservation of biodiversity and ecosystem services. This scientific literature review aimed to explore current knowledge and research gaps on interface processes regarding terrestrial PAs. At first, 3,515 references related to the topic were extracted through a standardized search on the Web of Science and analyzed with scientometric techniques. Next, a full‐text analysis was conducted on a sample of 240 research papers. A keyword analysis revealed a wide diversity of research topics, from ‘pure' ecology to sociopolitical research. We found a bias in the geographical distribution of research, with half the papers focusing on eight countries. Additionally, we found that the spatial extent of cross‐boundary interactions was rarely assessed, preventing any clear delimitation of PA interactive zones. In the 240 research papers we scanned, we identified 403 processes that were studied. The ecological effects of PAs were well documented and appeared to be positive overall. In contrast, the effects of PAs on local communities were understudied and, according to the literature focusing on these, were very variable according to local contexts. Our findings highlight key research advances on interface processes, especially regarding the ecological outcomes of PAs, the influence of human activities on biodiversity, and PA governance issues. In contrast, main knowledge gaps concern the spatial extent of interactive zones, as well as the interactions between local people and conservation actions and how to promote synergies between them. While the review was limited to terrestrial PAs, its findings allow us to propose research priorities for tackling environmental and socioeconomic challenges in the face of a rapidly changing world.     

Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population

Environmental DNA (eDNA) analysis has recently been used as a new tool for estimating intraspecific diversity. However, whether known haplotypes contained in a sample can be detected correctly using eDNA‐based methods has been examined only by an aquarium experiment. Here, we tested whether the haplotypes of Ayu fish (Plecoglossus altivelis altivelis) detected in a capture survey could also be detected from an eDNA sample derived from the field that contained various haplotypes with low concentrations and foreign substances. A water sample and Ayu specimens collected from a river on the same day were analysed by eDNA analysis and Sanger sequencing, respectively. The 10 L water sample was divided into 20 filters for each of which 15 PCR replications were performed. After high‐throughput sequencing, denoising was performed using two of the most widely used denoising packages, unoise3 and dada2 . Of the 42 haplotypes obtained from the Sanger sequencing of 96 specimens, 38 (unoise3 ) and 41 (dada2 ) haplotypes were detected by eDNA analysis. When dada2 was used, except for one haplotype, haplotypes owned by at least two specimens were detected from all the filter replications. Accordingly, although it is important to note that eDNA‐based method has some limitations and some risk of false positive and false negative, this study showed that the eDNA analysis for evaluating intraspecific genetic diversity provides comparable results for large‐scale capture‐based conventional methods. Our results suggest that eDNA‐based methods could become a more efficient survey method for investigating intraspecific genetic diversity in the field.     

Variation in phosphorus and sulfur content shapes the genetic architecture and phenotypic associations within the wheat grain ionome

Dissection of the genetic basis of wheat ionome is crucial for understanding the physiological and biochemical processes underlying mineral accumulation in seeds, as well as for efficient crop breeding. Most of the elements essential for plants are metals stored in seeds as chelate complexes with phytic acid or sulfur‐containing compounds. We assume that the involvement of phosphorus and sulfur in metal chelation is the reason for strong phenotypic correlations within ionome. Adjustment of element concentrations for the effect of variation in phosphorus and sulfur seed content resulted in drastic change of phenotypic correlations between the elements. The genetic architecture of wheat grain ionome was characterized by quantitative trait loci (QTL) analysis using a cross between durum and wild emmer wheat. QTL analysis of the adjusted traits and two‐trait analysis of the initial traits paired with either P or S considerably improved QTL detection power and accuracy, resulting in the identification of 105 QTLs and 617 QTL effects for 11 elements. Candidate gene search revealed some potential functional associations between QTLs and corresponding genes within their intervals. Thus, we have shown that accounting for variation in P and S is crucial for understanding of the physiological and genetic regulation of mineral composition of wheat grain ionome and can be implemented for other plants.     

转基因植物与近缘种之间基因流的研究进展

随着转基因植物的大面积种植,转基因植物的生态风险受到广泛关注,其中主要的风险是转基因植物与近缘物种之间的基因流及其影响。本文综述了目前商业化种植的转基因作物油菜、棉花、玉米和大豆,以及未商业化种植的水稻、小麦的基因流研究进展;分析了不同转基因作物与其近缘种之间发生基因流的频率和最远发生距离;介绍了降低基因流发生的方法。基因流频率受物种亲缘关系、花期重叠时间、风速风向等因素的影响,最远发生距离受气候条件、传粉媒介、地理条件等因素的影响。转基因作物与其近缘种之间的基因流频率与距花粉源的距离呈负相关关系(y=-0.59x-0.46,R²=0.25,P<0.01),亲缘关系近的基因流频率高。为了降低转基因植物与其近缘物种之间的基因流风险,建议采取“分区管理”的策略,并加强基因流发生之后的生态风险评价研究。     

不同郁闭度对野外回归的梓叶槭幼树形态和生理特征的影响

濒危植物野外回归是扩大极小种群野生植物种群的有效途径。适宜的回归生境是物种生长的必要条件, 研究植物的生理生态特征对不同野外回归生境的适应性, 是科学评价濒危物种种群回归生境适宜性的关键指标。本文以野外回归的极小种群野生植物梓叶槭(Acer catalpifolium)为研究对象, 探讨了无遮荫、林缘、林隙以及林下(郁闭度由小到大) 4种不同光照条件对梓叶槭幼树的形态特征、光合特征、类黄酮指数及叶绿素含量等的影响。结果表明: (1)随着郁闭度的增大, 梓叶槭幼树的基径、冠幅以及新生枝条数量产生差异, 均呈现先增大后减小的趋势; (2)在林缘生境中, 梓叶槭幼树的单叶面积及单叶质量均最大, 比叶面积随着郁闭度的增大而增大; (3)随着郁闭度的增大, 梓叶槭叶片胞间CO₂浓度、蒸腾速率及气孔导度均呈现先减小后增大的趋势, 叶绿素含量呈现上升趋势, 类黄酮指数则呈现先增大后减小的趋势。综上可知, 林缘适宜的光照条件更适合梓叶槭野外回归。这一结果可为梓叶槭以及其他极小种群野生植物的回归生境适宜性的探索研究提供借鉴。     

微生物多样性保护与病原微生物资源保藏

本文从微生物物种的多样性保护以及病原微生物资源的保藏等方面详细阐述了微生物资源保护与保藏的相互关系与重要性,介绍了微生物多样性保护及其研究进展和意义,病原微生物保藏的概述、资源的收集与共享,以及保藏机构相关信息。     

Topographic heterogeneity lengthens the duration of pollinator resources

The availability of sufficient and diverse resources across time is important for maintenance of biodiversity and ecosystem functioning. In this study, we examine the potential for variation in environmental conditions across topographic gradients to extend floral resource timing. Flowering time on a landscape may vary across topography due to differences in abiotic factors, species turnover, or genotypic differences. However, the extent to which this variation in phenology affects overall flowering duration on a landscape, and the components of diversity that influence flowering duration, are unexplored. We investigate whether differences in flowering time due to topography yield an overall extension in duration of flowering resources in a northern California grassland. We recorded flowering time of pollinator resource species across four successive spring growing seasons (2015–2018) on paired north and south aspects. Flowering time differences were evaluated both at the community level and within species present on both paired aspects. The role of plasticity was examined in an experimental case study using genotypes of Lasthenia gracilis. We found that aspect is a strong determinant of phenology, with earlier flowering on warmer south‐facing slopes. Aspect differences resulted in complementarity in timing of flowering resources across sites, as aspects that started flowering earlier also ended earlier. Complementarity between north and south aspects served to extend the flowering time of pollinator resources by an average of 4–8 days (8%–15%), depending on the year. This extension can be attributed to both within‐species responses to aspect differences and species turnover. Flowering of L. gracilis genotypes was distinct across aspects, demonstrating that plasticity can drive the extension of flowering duration. Our findings indicate that heterogeneous topography can extend overall flowering time of pollinator resources, which may support pollinator biodiversity. Extension was most pronounced at the community level, which incorporates species turnover as well as plastic and genotypic differences within species.     

Effects of captivity,diet, and relocation on the gut bacterial communities of white‐footed mice

Microbes can have important impacts on their host's survival. Captive breeding programs for endangered species include periods of captivity that can ultimately have an impact on reintroduction success. No study to date has investigated the impacts of captive diet on the gut microbiota during the relocation process of generalist species. This study simulated a captive breeding program with white‐footed mice (Peromyscus leucopus) to describe the variability in gut microbial community structure and composition during captivity and relocation in their natural habitat, and compared it to wild individuals. Mice born in captivity were fed two different diets, a control with dry standardized pellets and a treatment with nonprocessed components that reflect a version of their wild diet that could be provided in captivity. The mice from the two groups were then relocated to their natural habitat. Relocated mice that had the treatment diet had more phylotypes in common with the wild‐host microbiota than mice under the control diet or mice kept in captivity. These results have broad implications for our understanding of microbial community dynamics and the effects of captivity on reintroduced animals, including the potential impact on the survival of endangered species. This study demonstrates that ex situ conservation actions should consider a more holistic perspective of an animal's biology including its microbes.     

Evolutionary origins of taro (Colocasia esculenta) in Southeast Asia

As an ancient clonal root and leaf crop, taro (Colocasia esculenta, Araceae) is highly polymorphic with uncertain genetic and geographic origins. We explored chloroplast DNA diversity in cultivated and wild taros, and closely related wild taxa, and found cultivated taro to be polyphyletic, with tropical and temperate clades that appear to originate in Southeast Asia sensu lato. A third clade was found exclusively in wild populations from Southeast Asia to Australia and Papua New Guinea. Our findings do not support the hypothesis of taro domestication in Papua New Guinea, despite archaeological evidence for early use or cultivation there, and the presence of apparently natural wild populations in the region (Australia and Papua New Guinea).     

西双版纳入侵长足捷蚁与土著黄猄蚁的种间竞争

【目的】入侵物种能够通过竞争影响本地物种的种群,从而影响入侵地的生物多样性。长足光捷蚁Anoplolepis gracilipes是全球最具破坏力的入侵蚂蚁之一。本研究旨在明确西双版纳地区入侵长足捷蚁与土著优势种蚂蚁黄猄蚁Oecophylla smaragdina之间的竞争关系。【方法】通过野外调查和室内控制试验相结合的方法,观察和对比分析长足捷蚁和黄猄蚁的体型大小,雾凉季和雨季的巢穴外觅食活动规律,觅食能力(搜寻食物的时间、在觅食时间内召集的最大工蚁数),打斗行为(不同打斗组合的攻击强度和死亡率)以及对饥渴的耐受性(无食物和水分供应时平均存活时间和存活率随时间的变化)。【结果】长足捷蚁工蚁体长(3.66±0.06 mm)显著小于黄猄蚁工蚁(8.27±0.16 mm)。在雾凉季时,长足捷蚁具有比黄猄蚁更长的觅食活动时间;而在雨季时,两种蚂蚁均在下午温度较高时段觅食活动的个体数量减少。苹果、蜂蜜和火腿肠3种食物作为诱饵时,长足捷蚁具有更快搜寻食物的能力,4~8 min便能找寻到食物,而黄猄蚁需要8~21 min才能找寻到食物,此外在寻找到食物后,长足捷蚁也有更快召集同伴的能力。在人工控制试验中,1头长足捷蚁和1头黄猄蚁同时存在时主要以不攻击和低强度攻击为主,而当两种蚂蚁中的任意其中一种的个体数量增加到5头时,攻击强度会显著增加,两种蚂蚁均存在种间协作行为。在饥渴状态下,两种蚂蚁工蚁的平均存活时间差异不显著,但长足捷蚁最长存活120 h,黄猄蚁最长存活96 h。【结论】在西双版纳地区,长足捷蚁相较于土著黄猄蚁具有更强的觅食的能力,雾凉季觅食活动时间更长,暗示长足捷蚁可能具有较强的温度适应能力。有必要加强对这一入侵蚂蚁的研究,并密切关注其种群在该地区的发展。