Technologies for integrating biological data

The process of building a new database relevant to some field of study in biomedicine involves transforming, integrating and cleansing multiple data sources, as well as adding new material and annotations. This paper reviews some of the requirements of a general solution to this data integration problem. Several representative technologies and approaches to data integration in biomedicine are surveyed. Then some interesting features that separate the more general data integration technologies from the more specialised ones are highlighted.     

Proteomics in biomarker discovery and drug development

Proteomics is a research field aiming to characterize molecular and cellular dynamics in protein expression and function on a global level. The introduction of proteomics has been greatly broadening our view and accelerating our path in various medical researches. The most significant advantage of proteomics is its ability to examine a whole proteome or sub-proteome in a single experiment so that the protein alterations corresponding to a pathological or biochemical condition at a given time can be considered in an integrated way. Proteomic technology has been extensively used to tackle a wide variety of medical subjects including biomarker discovery and drug development. By complement with other new technique advances in genomics and bioinformatics, proteomics has a great potential to make considerable contribution to biomarker identification and to revolutionize drug development process. This article provides a brief overview of the proteomic technologies and their application in biomarker discovery and drug development.     

Cost-comparison of DDT and alternative insecticides for malaria control

In anti-malaria operations the use of DDT for indoor residual spraying has declined substantially over the past 30years, but this insecticide is still considered valuable for malaria control, mainly because of its low cost relative to alternative insecticides. Despite the development of resistance to DDT in some populations of malaria vector Anopheles mosquitoes (Diptera: Culicidae), DDT remains generally effective when used for house-spraying against most species of Anopheles, due to excitorepellency as well as insecticidal effects. A 1990 cost comparison by the World Health Organization (WHO) found DDT to be considerably less expensive than other insecticides, which cost 2 to 23 times more on the basis of cost per house per 6 months of control. To determine whether such a cost advantage still prevails for DDT, this paper compares recent price quotes from manufacturers and WHO suppliers for DDT and appropriate formulations of nine other insecticides (two carbamates, two organophosphates and five pyrethroids) commonly used for residual house-spraying in malaria control programmes. Based on these 'global' price quotes, detailed calculations show that DDT is still the least expensive insecticide on a cost per house basis, although the price appears to be rising as DDT production declines. At the same time, the prices of pyrethroids are declining, making some only slightly more expensive than DDT at low application dosages. Other costs, including operations (labour), transportation and human safety may also increase the price advantages of DDT and some pyrethroids vs. organophosphates and carbamates, although possible environmental impacts from DDT remain a concern. However, a global cost comparison may not realistically reflect local costs or effective application dosages at the country level. Recent data on insecticide prices paid by the health ministries of individual countries showed that prices of particular insecticides can vary substantially in the open market. Therefore, the most cost-effective insecticide in any given country or region must be determined on a case-by-case basis. Regional coordination of procurement of public health insecticides could improve access to affordable products.     

Analysis of the genome of an alkaliphilic Bacillus strain from an industrial point of view

Bacillus species and other microbes with pH optima for growth higher than pH 9 are defined as alkaliphiles. A large number of alkaliphilic Bacillus strains producing useful enzymes, have been isolated from various environments. Some of these enzymes, such as proteases and cellulases from alkaliphilic Bacillus strains, have been commercialized and have brought great advantages to industry and domestic life. To support further development of the enzyme industry, we initiated analysis of the genome of Bacillus halodurans C-125, which is 4.25 Mb in size, and constructed a physical and genetic map for comparison with the Bacillus subtilis chromosome. Systematic sequencing of the whole genome of Bacillus halodurans C-125 has been automated since the beginning of May 1998, and sequencing of 98% of the whole genome has been done so far. Through genome analysis, it became apparent that the genome organization of alkaliphilic Bacillus halodurans C-125 is totally different from that of B. subtilis orthologues. Received: July 11, 1999 / Accepted: December 27, 1999     

奥得福尔制剂的药效学研究与临床

对奥得福尔制剂的药效学定量杀菌试验、抗病毒试验及临床应用的结果表明： 得福尔制剂原液,１：１稀释液及１：５稀释液对大肠杆菌、金黄色葡萄球菌和白色念珠菌作用１０ｍｉｎ,杀灭率均可达９９．９％以上;消毒液放置室温下稳定,有机物的存在对杀灭作用有轻度影响,但杀灭率仍可达９９．９％以上;体外抗病毒试验结果表明,该制剂的主要抗病毒功效成分－黄精多糖,对单纯疱疹病毒的空斑抑制率达到１００％;稳定性试验表明,该     

Meta分析及其在生态学上的应用

１Ｍｅｔａ分析的概念和它的发展应用Ｍｅｔａ分析（Ｍｅｔａ－Ａｎａｌｙｓｉｓ）是一种定量综合研究结果的方法．这种方法的思想起源于本世纪３０年代,６０年代用于教育、心理等社会科学领域,１９７６年由Ｇｌａｓ命名为术语“Ｍｅｔａ－Ａｎａｌｙｓｉｓ”［１］。Ｇ...     

鱼腥藻提取液对水稻生长发育和产量的促进作用

以田间小区试验和大区产量直接对比的方法研究了鱼腥藻提取认对水稻幼苗生长和产量以及产量构成要素的影响,并探讨了方便有效且适宜于大田使用的方法。用藻液处理后水稻幼苗增高,根数、根长增加,分蘖能力增强,秧龄提前,叶面积明显加大。水稻成熟后除株高比对照略有下降外,各项产量构成要素如粒数、粒重、有效分蘖数、植株干重、千粒重、穗长等都优于对照组,但增产幅度随水稻品种和处理方式不同而异。大田使用时以１％鱼腥藻提     

应用球孢白僵菌防治马尾松毛虫的策略及其生物多样性基础的研究

对３种不同方式应用球孢白僵菌防治马尾松毛虫的结果表明,３个林场的虫口在连续４年内均被抑制在低水平,但松毛虫种群动态不同：以淹没式施放白僵菌为主,但有时也淹没式施放化学杀虫剂的麻姑山林场平均虫口密度为３．１６±４．９４条·株－１,波动最大;长期接种式应用白僵菌的戴公山林场平均虫口密度只有０．０９±０．１４条·株－１,一直处于低密度状态;以化学农药处理小面积虫源地结合不频繁地淹没式施放白僵菌的金寺山林场平均虫口密度为１．４５±２．２９条·株－１,偶可达防治指标．对群落组成的调查结果表明,从麻姑山、金寺山到戴公山,动物和虫生真菌群落各物种的总个体数递减,而总物种数、总物种数与总个体数的比值,天敌与害虫种数和个体数的比值以及群落多样性指数皆递增,表明群落多样性渐趋丰富,食物链网渐趋复杂,群落稳定性和对害虫的自然控制能力逐渐增强．对群落动态的主成分分析进一步表明,从麻姑山、金寺山到戴公山,动物和虫生真菌群落的演化时序分明,趋于稳定,自我调节力强．     

广西姑婆山及邻近地区大型真菌物种多样性

姑婆山紧邻南岭生物多样性保护优先区，孕育了丰富的生物资源。为了解该区域大型真菌物种多样性，该文采用随机踏查法对广西姑婆山自治区级自然保护区(以下简称姑婆山)及邻近地区大型真菌资源进行调查采集，并结合形态学和分子生物学方法进行物种鉴定。结果表明：(1)共发现348种大型真菌，隶属于2门6纲17目69科175属，其中包含食用菌40种、药用菌42种、毒菌7种。(2)对该区的物种组成分析表明，优势科为蘑菇科(Agaricaceae)、牛肝菌科(Boletaceae)、粉褶蕈科(Entolomataceae)和锈革菌科(Hymenochaetaceae)等9科；优势属为鹅膏属(Amanita)、靴耳属(Crepidotus)、毛皮伞属(Crinipellis)和粉褶蕈属(Entoloma)等11属。(3)共发现2个中国特有属，即脆孔菌属(Fragiliporia)和臧氏牛肝菌属(Zangia);11个中国特有种，即厚集毛菌(Coltricia crassa)、魏氏集毛菌(C.weii)、丛生粉褶蕈(Entoloma caespitosum)、极细粉褶蕈(E.praegracile)、近薄囊粉褶蕈...     

真菌鞘糖脂的生物学功能及应用研究进展

丝状真菌作为一类重要的微生物，被广泛应用于发酵食品、工业酶和次生代谢物等工业生产中。真菌鞘糖脂主要由鞘氨醇、脂肪酸链和特殊的极性基团组成，根据极性基团的不同，分为中性鞘糖脂和酸性鞘糖脂两大类。鞘糖脂不仅参与真菌生长、细胞分化、增殖、细胞凋亡、逆境胁迫等重要生理活动，中性鞘糖脂还可作为功能性医药用品、化妆品和保健食品的重要活性组分。本文论述了真菌鞘糖脂的主要种类、结构、生物合成途径和及其参与丝状真菌生长、分化和响应逆境胁迫的生物学功能；探讨了真菌中性鞘糖脂作为抗菌肽的靶点和酸性鞘糖脂在开发抗真菌药物中的应用；同时还综述了中性鞘糖脂作为化妆品的保湿成分或保健食品的功能成分，在改善皮肤屏障功能和预防特应性皮炎中的重要作用的相关研究进展，尤其是来源于曲霉的中性鞘糖脂，可显著增强皮肤屏障功能，并可作为益生元预防肠道损伤；另外还探讨了曲霉尤其是米曲霉作为开发中性鞘糖脂生物资源的优势。