Amino acid conservation and interactions in rhodopsin: Probing receptor activation by NMR spectroscopy

Rhodopsin is a classical two-state G protein-coupled receptor (GPCR). In the dark, its 11-cis retinal chromophore serves as an inverse agonist to lock the receptor in an inactive state. Retinal–protein and protein–protein interactions have evolved to reduce the basal activity of the receptor in order to achieve low dark noise in the visual system. In contrast, absorption of light triggers rapid isomerization of the retinal, which drives the conversion of the receptor to a fully active conformation. Several specific protein–protein interactions have evolved that maintain the lifetime of the active state in order to increase the sensitivity of this receptor for dim-light vision in vertebrates. In this article, we review the molecular interactions that stabilize rhodopsin in the dark-state and describe the use of solid-state NMR spectroscopy for probing the structural changes that occur upon light-activation. Amino acid conservation provides a guide for those interactions that are common in the class A GPCRs as well as those that are unique to the visual system. This article is part of a Special Issue entitled: Retinal Proteins — You can teach an old dog new tricks.     

Role of pigment epithelium-derived factor in the involution of hemangioma: Autocrine growth inhibition of hemangioma-derived endothelial cells

Hemangioma is a benign tumor derived from abnormal blood vessel growth. Unlike other vascular tumor counterparts, a hemangioma is known to proliferate during its early stage but it is followed by a stage of involution where regression of the tumor occurs. The critical onset leading to the involution of hemangioma is currently not well understood. This study focused on the molecular identities of the involution of hemangioma. We demonstrated that a soluble factor released from the involuting phase of hemangioma-derived endothelial cells (HemECs) and identified pigment epithelium-derived factor (PEDF) as an anti-angiogenic factor that was associated with the growth inhibition of the involuting HemECs. The growth inhibition of the involuting HemECs was reversed by suppression of PEDF in the involuting HemECs. Furthermore, we found that PEDF was more up-regulated in the involuting phase of hemangioma tissues than in the proliferating or the involuted. Taken together, we propose that PEDF accelerates the involution of hemangioma by growth inhibition of HemECs in an autocrine manner. The regulatory mechanism of PEDF expression could be a potential therapeutic target to treat hemangiomas.     

Response of Resistant and Susceptible Bell Pepper (Capsicum annuum) to a Southern California Meloidogyne incognita Population from a Commercial Bell Pepper Field

To determine the presence and level of root-knot nematode (Meloidogyne spp.) infestation in Southern California bell pepper (Capsicum annuum) fields, soil and root samples were collected in April and May 2012 and analyzed for the presence of root-knot nematodes. The earlier samples were virtually free of root-knot nematodes, but the later samples all contained, sometimes very high numbers, of root-knot nematodes. Nematodes were all identified as M. incognita. A nematode population from one of these fields was multiplied in a greenhouse and used as inoculum for two repeated pot experiments with three susceptible and two resistant bell pepper varieties. Fruit yields of the resistant peppers were not affected by the nematodes, whereas yields of two of the three susceptible pepper cultivars decreased as a result of nematode inoculation. Nematode-induced root galling and nematode multiplication was low but different between the two resistant cultivars. Root galling and nematode reproduction was much higher on the three susceptible cultivars. One of these susceptible cultivars exhibited tolerance, as yields were not affected by the nematodes, but nematode multiplication was high. It is concluded that M. incognita is common in Southern California bell pepper production, and that resistant cultivars may provide a useful tool in a nonchemical management strategy.     

A comparison of toxicant-induced succession for five antifouling compounds on marine periphyton in SWIFT microcosms

Five antifouling biocides, chlorothalonile, dichlofluanide, medetomidine, tolylfluanide, and zinc pyrithione, were evaluated regarding their effect on the composition of the periphyton community and the subsequent toxicant-induced succession (TIS). The periphyton communities were exposed in a semi-static setting for 96 h using a SWIFT microcosm. As a measure of community composition, pigment profiles from the exposed communities were used as effect indicators and compared with unexposed parts of the same community using the Bray–Curtis dissimilarity index. Chlorothalonile caused changes in the community starting at 85 μg l^?1 while dichlofluanide had no effect even at the highest concentrations used, 810 μg l^?1. The related substance tolylfluanide only affected the community composition at 2700 μg l^?1. Medetomidine had a different response curve with a small effect on the community composition at 0.8 μg l^?1 which then disappeared only to reappear at 240 μg l^?1. Zinc pyrithione had the largest effect on the periphyton community with changes starting at 10 μg l^?1 and no detectable pigments at 100 μg l^?1. The changes in the community composition for the five substances were also compared using multidimensional scaling. When all substances were analyzed and plotted together, chlorothalonile, dichlofluanide, medetomidine, and tolylfluanide showed surprisingly similar effects compared to zinc pyrithione that gave very different TIS. However, when only chlorothalonile, dichlofluanide, and tolylfluanide were plotted together, clear differences in TIS between the three toxicants were revealed. Dichlofluanide only induced small effects, while concentration-dependent TIS trajectories for chlorothalonile and tolylfluanide took off in opposite directions indicating very different responses of the periphyton communities. This study demonstrates that substances with a similar chemical structure and mechanisms of action can have different effects on the community composition. With the exception of zinc pyrithione, none of the recorded effect levels were at concentrations reported from marine environments so far.     

叶面喷施6-BA对高温胁迫下甜椒幼苗生长和叶片生理生化指标的影响

以‘P13201’甜椒品种为材料,在光照培养箱内采用营养液栽培法,研究了叶面预喷施不同浓度6-BA(5、10、20、50μmol/L)溶液对高温胁迫(40℃/30℃昼/夜)下甜椒幼苗的生长及生理生化指标的影响,探讨缓解甜椒高温胁迫的最佳6-BA浓度。结果显示:(1)高温胁迫致使甜椒幼苗的各生长指标及叶绿素含量显著下降,且10μmol/L 6-BA处理下的株高、茎粗、地上干重、根干重与常温对照(28℃/18℃昼/夜)差异不显著,其幼苗的地上鲜重、根鲜重、叶绿素a、叶绿素b及叶绿素总含量在各处理中降幅也最小。(2)高温胁迫下甜椒幼苗叶片的PSⅡ实际光化学量子产量(Yield)、PSⅡ实际光化学效率(ФPSⅡ)、PSⅡ最大光化学效率(Fv/Fm)显著下降,非光化学猝灭(NPQ)显著升高;相比其他处理组,10μmol/L 6-BA溶液处理下的各荧光参数变化幅度最小,特别是NPQ与对照差异不显著。(3)甜椒叶片中O-·2产生速率、抗氧化酶(SOD、APX、POD)活性、丙二醛(MDA)含量及相对电导率受高温胁迫后显著增大,但10μmol/L 6-BA溶液处理下O-·2产率、MDA含量及相对电导率显著小于T0处理(蒸馏水+高温)下的各值,而其SOD、APX、POD活性则表现相反,相比T0处理,显著升高了50.5%、79.4%、50.3%。研究表明,高温显著抑制了甜椒幼苗正常生长,致使叶片中各抗逆生理生化指标变幅大增,而叶面喷施适宜浓度的6-BA有利于高温胁迫下抗氧化酶活性的升高及光能的捕获与转换,有效缓解高温胁迫伤害,维持甜椒幼苗的正常生长,并以10μmol/L 6-BA溶液处理效果最好。     

Chlorophyll,anthocyanin, and gas exchange changes assessed by spectroradiometry in Fragaria chiloensis under salt stress

Chlorophyll and anthocyanin contents provide a valuable indicator of the status of a plant’s physiology, but to be more widely utilized it needs to be assessed easily and non‐destructively. This is particularly evident in terms of assessing and exploiting germplasm for plant‐breeding programs. We report, for the first time, experiments with Fragaria chiloensis（L.）Duch. and the estimation of the effects of response to salinity stress（0, 30, and 60 mmol NaCl/L） in terms of these pigments content and gas exchange. It is shown that both pigments（which interestingly, themselves show a high correlation） give a good indication of stress response. Both pigments can be accurately predicted using spectral reflectance indices（SRI）;however, the accuracy of the predictions was slightly improved using multilinear regression analysis models and genetic algorithm analysis. Specifically for chlorophyll content, unlike other species, the use of published SRI gave better indications ofstress response than Normalized Difference Vegetation Index.The effect of salt on gas exchange is only evident at the highest concentration and some SRI gave better prediction performance than the known Photochemical Reflectance Index. This information will therefore be useful for identifying tolerant genotypes to salt stress for incorporation in breeding programs.     

枫香秋季变色期叶色变化及其生理基础

为探究秋季枫叶呈色的关键生理因素,该文以转色期叶色为绿色、黄色和红色的枫香单株为试材,研究了L^*、a^*、b^*值变化与叶片色素、可溶性糖及可溶性蛋白质含量变化的相关性。结果表明:(1)在变色期,3种色彩枫香叶片叶绿素a、叶绿素b、总叶绿素和类胡萝卜素均大量降解,花色素苷不同程度积累。(2)绿色叶单株叶绿素和类胡萝卜素始终保持较高含量,花色素苷含量上升4.2倍,叶片内色素含量比值始终保持稳定; 黄色叶单株叶绿素和类胡萝卜素含量最低,花色素苷含量上升4.4倍,b^*值与叶绿素含量极显著负相关,与类胡萝卜素含量显著负相关,与花色素苷/类胡萝卜素含量比值极显著正相关; 红色叶单株叶绿素和类胡萝卜素含量略高于黄色叶单株,花色素苷含量上升27.2倍,a^*值与叶绿素含量、类胡萝卜素含量极显著负相关,与花色素苷含量显著正相关,与色素含量比值无显著相关性。(3)红色叶单株具有较高的可溶性糖含量和可溶性蛋白质含量。因此,在枫香叶片变色期,保持较高的叶绿素和类胡萝卜素含量,维持色素含量比值稳定使叶片呈现绿色; 叶绿素和类胡萝卜素的大量降解,以及花色素苷/类胡萝卜素含量比值的升高使叶片呈现黄色; 叶绿素的降解和花色素苷的大量合成使叶片呈现红色。     

Muscodor sutura, a novel endophytic fungus with volatile antibiotic activities

Muscodor sutura is described as a novel species that is also an endophyte of Prestonia trifidi. Uniquely, this fungus produces a reddish pigment, on potato dextrose agar (PDA), when grown in the dark. In addition, the organism makes some volatile organic compounds that have not been previously reported from this genus, namely, thujopsene, chamigrene, isocaryophyllene, and butanoic acid, 2-methyl. These and other volatile compounds in the mixture possess wide-spectrum antifungal activity and no observable antibacterial activity. Most unusually, on PDA, the newly developing hyphae of this fungus grow in a perfect stitching pattern, in and out of the agar surface. The partial ITS–DNA sequence of this organism is identical to that of Muscodor vitigenus but it differs from all other Muscodor spp. Justification for a new species, as Muscodor sutura, is collectively based on morphological, cultural, chemical, and bioactivity properties.