Soil moisture dynamics of calcareous grassland under elevated CO2

Water relations of nutrient-poor calcareous grassland under long-term CO₂ enrichment were investigated. Understanding CO₂ effects on soil moisture is critical because productivity in these grasslands is water limited. In general, leaf conductance was reduced at elevated CO₂, but responses strongly depended on date and species. Evapotranspiration (measured as H₂O gas exchange) revealed only small, non-significant reductions at elevated CO₂, indicating that leaf conductance effects were strongly buffered by leaf boundary layer and canopy conductance (leaf area index was not or only marginally increased under elevated CO₂). However, these minute and non-significant responses of water vapour loss accumulated over time and resulted in significantly higher soil moisture in CO₂-enriched plots (gravimetric spot measurements and continuous readings using a network of time-domain reflectometry probes). Differences strongly depended on date, with the smallest effects when soil moisture was very high (after heavy precipitation) and effects were largest at intermediate soil moisture. Elevated CO₂ also affected diurnal soil moisture courses and rewetting of soils after precipitation. We conclude that ecosystem-level controls of the water balance (including soil feedbacks) overshadow by far the physiological effects observed at the leaf level. Indirect effects of CO₂ enrichment mediated by trends in soil moisture will have far-ranging consequences on plant species composition, soil bacterial and faunal activity as well as on soil physical structure and may indirectly also affect hydrology and trace gas emissions and atmospheric chemistry. Received: 21 December 1997 / Accepted: 3 August 1998     

A Data Base for Scaling up from the Leaf to the Canopy

A data base was generated for quantifying effects of thermal time (degree-days) on the appearance of new leaves, the expansion of such leaves to maximum area, their death, the appearance of new internodes below the node associated with such leaves, and the extension of these internodes to maximum length. The data base for a list of crop (agronomic and horticultural), weed, and native Tallgrass Prairie plants has been summarized, with equations for the above events as a function of degree days, with appropriate base temperatures and maximum cut-off temperatures, in a Java applet which is available at a website with the URL . Associated graphical plots such as shown in this paper are also given. Branching behavior was accounted for. These events predict the effect of thermal time on leaf age and its height in the plant canopy, both important factors needed for upscaling functions for leaf behavior to those for behavior of the plant canopy. The data base is evolving to include coefficients for other species. Coefficients are used to predict the leaf area index of the canopy, which is important for predicting evapotranspiration from the crop and the protection of the soil from erosion.     

Heterogeneity of phenotypic and genotypic traits including organic-acid resistance in Escherichia coli O157 isolates

We undertook an epidemiologic study for the sensitivity of both Shiga-like toxin (Slt)-producing Escherichia coli (STEC) O157 and non-STEC O157 strains isolated from different patients with diarrhea to hydrochloric acid (HCl) and organic acids such as acetate, propionate, butyrate and lactate, and other pathogenic factors. The E. coli O157 isolates examined showed a wide variety of organic-acid susceptibility patterns. E. coli O157 isolates resistant to HCl or acetate were found more frequently than those resistant to other organic acids. These isolates also showed diverse pathogenicity patterns for the presence of the virulence genes, antibiotic susceptibility and plasmid profile.     

Fingerprint quantitative variation and asymmetry in Brazilian Whites and Blacks

A total of 432 Whites and 654 Blacks were studied in relation to the index of pattern intensity and a smaller number (296 Whites; 496 Blacks) for total ridge count. There does not exist a clear gradient in either sex when the Blacks are subdivided into three phenotypic categories according to the amount of African ancestry they seem to possess. The standard deviations and coefficients of variation are strikingly similar in all groups studied. Racial differences in the averages of these two quantitative measures and in the asymmetry of total ridge count are small and nonsignificant. Fingerprints are very sensitive indicators of disturbances in the intrauterine development, and their asymmetry has a significant hereditary component. Since there is no increased or decreased asymmetry when we consider subgroups with various amounts of racial admixture, these and other results suggest that genetic adaptation in humans is a process involving mainly the whole species, and not narrow racial specializations.     

Effect of fish length and nutritional condition on the fecundity of distressed Atlantic cod Gadus morhua from the Baltic Sea

The disappearance of larger individuals and the decrease in individual body condition suffered by Atlantic cod Gadus morhua in the eastern Baltic during the past two decades can be expected to affect the stock reproductive output. To investigate this, female G. morhua were collected during the spawning and pre‐spawning period in 2015?2016. The current individual potential fecundity (F_P) of eastern Baltic G. morhua was estimated and analysed in relation to total length (L_T) and indices of nutritional status such as body condition (K) and hepato‐somatic index (I_H) using generalized linear models. In addition, the current prevalence of atresia and its potential relation to K were investigated. Moreover, a calibration curve to estimate F_P from oocyte diameter, based on the autodiametric oocyte counting method, was established for the first time for eastern Baltic G. morhua and can be used for future fecundity studies on this stock. The results showed that F_P was mainly positively related to fish length, but K and I_H also contributed significantly to the variation in F_P. The model predicted that fish with K = 1·2 have a F_P 51% higher than fish of the same L_T with K = 0·8. The prevalence of fecundity regulation by atresia was 5·8%, but it was found only in fish in the pre‐spawning maturity stage and with low K. Temporal changes in biological features such as the length composition and individual body condition of eastern Baltic G. morhua, should be accounted for when estimating stock reproductive potential.     

dbSWEET: An Integrated Resource for SWEET Superfamily to Understand,Analyze and Predict the Function of Sugar Transporters in Prokaryotes and Eukaryotes

SWEET (Sweet Will Eventually be Exported Transporter) proteins have been recently discovered and form one of the three major families of sugar transporters. Homologs of SWEET are found in both prokaryotes and eukaryotes. Bacterial SWEET homologs have three transmembrane segments forming a triple-helical bundle and the functional form is dimers. Eukaryotic SWEETs have seven transmembrane helical segments forming two triple-helical bundles with a linker helix. Members of SWEET homologs have been shown to be involved in several important physiological processes in plants. However, not much is known regarding the biological significance of SWEET homologs in prokaryotes and in mammals. We have collected more than 2000 SWEET homologs from both prokaryotes and eukaryotes. For each homolog, we have modeled three different conformational states representing outward open, inward open and occluded states. We have provided details regarding substrate-interacting residues and residues forming the selectivity filter for each SWEET homolog. Several search and analysis options are available. The users can generate a phylogenetic tree and structure-based sequence alignment for selected set of sequences. With no metazoan SWEETs functionally characterized, the features observed in the selectivity filter residues can be used to predict the potential substrates that are likely to be transported across the metazoan SWEETs. We believe that this database will help the researchers to design mutational experiments and simulation studies that will aid to advance our understanding of the physiological role of SWEET homologs. This database is freely available to the scientific community at http://bioinfo.iitk.ac.in/bioinfo/dbSWEET/Home.     

Biochemical and Structural Characterization of TesA,a Major Thioesterase Required for Outer-Envelope Lipid Biosynthesis in Mycobacterium tuberculosis

With the high number of patients infected by tuberculosis and the sharp increase of drug-resistant tuberculosis cases, developing new drugs to fight this disease has become increasingly urgent. In this context, analogs of the naturally occurring enolphosphates Cyclipostins and Cyclophostin (CyC analogs) offer new therapeutic opportunities. The CyC analogs display potent activity both in vitro and in infected macrophages against several pathogenic mycobacteria including Mycobacterium tuberculosis and Mycobacterium abscessus. Interestingly, these CyC inhibitors target several enzymes with active-site serine or cysteine residues that play key roles in mycobacterial lipid and cell wall metabolism. Among them, TesA, a putative thioesterase involved in the synthesis of phthiocerol dimycocerosates (PDIMs) and phenolic glycolipids (PGLs), has been identified. These two lipids (PDIM and PGL) are non-covalently bound to the outer cell wall in several human pathogenic mycobacteria and are important virulence factors. Herein, we used biochemical and structural approaches to validate TesA as an effective pharmacological target of the CyC analogs. We confirmed both thioesterase and esterase activities of TesA, and showed that the most active inhibitor CyC₁₇ binds covalently to the catalytic Ser104 residue leading to a total loss of enzyme activity. These data were supported by the X-ray structure, obtained at a 2.6-Å resolution, of a complex in which CyC₁₇ is bound to TesA. Our study provides evidence that CyC₁₇ inhibits the activity of TesA, thus paving the way to a new strategy for impairing the PDIM and PGL biosynthesis, potentially decreasing the virulence of associated mycobacterial species.