海洋真菌Thraustochytrium sp.FJN-10 Δ~4脱饱和酶基因的cDNA克隆及结构分析

海洋真菌Thraustochytriumsp.FJN-10是二十二碳六烯酸(Docosahexaenoic acid,DHA,C22:6n-3)的高产菌株。为阐明其DHA生物合成机制及采用基因工程技术提高DHA生物合成能力,通过RT-PCR扩增了DHA生物合成相关脱饱和酶基因的保守区,采用cDNA末端扩增技术(Rapid amplification of cDNA ends,RACE)获取全长基因,结果分析表明其克隆基因为Δ4脂肪酸脱饱和酶基因,开放阅读框由1560个核苷酸组成,共编码519个氨基酸,这是Thraus-tochytriumsp.FJN-10Δ4脂肪酸脱饱和酶基因研究的首次报道。     

具细菌群体感应抑制活性海洋细菌的筛选鉴定

目的:从海洋环境中筛选对细菌群体感应有抑制作用的活性菌株,为以致病菌群体感应系统为靶点的新型疗法提供新的药用资源。方法:从海水中分离纯化细菌菌株,采用根癌农杆菌平板筛选模型筛选细菌群体感应抑制活性细菌,对筛选出的海洋细菌进行生理生化和16S rDNA序列测定,根据《伯杰氏手册》进行菌种分类鉴定。结果:从217株海洋细菌中筛选出1株能显著抑制细菌群体感应效应的海洋细菌Y2,该海洋细菌具有蜡样芽孢杆菌(Bacillus cereus)的典型特征,其16S rDNA序列与GenBank中蜡样芽孢杆菌16S rDNA的部分序列有100%的同源性。结论:海洋环境中也存在具有抑制细菌群体感应活性的微生物。     

嵊山岛海洋药用生物资源状况调查

对嵊山岛礁生物资源以及邻近海域的微藻资源调查,共发现121种潮间带生物,其中有28种海洋药用生物,包括红条毛肤石鳖(Acanthochiton rubrolineatus)、马粪海胆(Hem icentiotus pulcherrimus)、海萝(Gloiopeltis furcata)等,其中多数是海洋中药或可制成中成药,嵊山岛丰富的海绵资源具有筛选天然活性物质的潜力。嵊山岛邻近海域的产毒藻类包括产麻痹性贝毒(PSP)的链状亚历山大藻(Alexandrium catenatum)、塔玛亚历山大藻(Alexandrium tamarens),产腹泻性贝毒(DSP)的倒卵形鳍藻(D inophysis forti)、具尾鳍藻(D inophysis caudata);产记忆缺失性贝毒(ASP)的尖刺拟菱形藻(Pseudo-Nitzschia pungens)、多列拟菱形藻(Pseudo-Nitzschia multiseries)和多纹拟菱形藻(Pseudo-Nitzschia multistriata);产神经性贝毒(NSP)的短凯伦藻(Kerina breve)以及红色裸甲藻(Gymnodinium sangium)、米氏凯伦藻(Kerina m ikim oto)、环状异甲藻(Heterocapsa circularisqua-ma)等能产生生理活性物质的藻类,其中嵊山岛邻近海域产石房蛤毒素和神经毒素的有毒藻类可能具有药用开发价值。     

海洋病毒——海洋生态系统结构与功能的重要调控者

摘要：作为海洋生态系统中的重要成员,海洋病毒在调节海洋生态系统中的群落结构、种群数量、物质循环、生物间遗传物质的转移以及气候变化等方面起着重要的作用。本文概述了近年来对海洋病毒的研究进展,讨论了海洋病毒对海洋生态系统结构和功能的重要调控作用,并对海洋病毒的研究前景进行了展望。     

Stream geomorphology regulates the effects on periphyton of ecosystem engineering and nutrient enrichment by Pacific salmon

1. Pacific salmon (Oncorhynchus spp.) returning to streams deliver substantial quantities of nutrients (nitrogen and phosphorus) that may stimulate primary production. Salmon can also affect the phytobenthos negatively via physical disturbance during nest excavation, a process that may counteract the positive effects of salmon‐derived nutrients on benthic algae. The ability of salmon to disturb benthic habitats may be a function of substratum particle size, and therefore, the geomorphology of streams could determine the net effect of salmon on benthic communities. 2. Based on surveys of 17 streams in southwest Alaska before the salmon run and during peak salmon density, we identified size thresholds for the disturbance of substratum particles by salmon and classified particles as vulnerable (<60 mm B‐axis), invulnerable (>110 mm) or transitional (61–110 mm). At the scale of individual rocks, algal biomass on vulnerable substrata decreased at peak spawning (relative to values before the run) as a power function of salmon density; transitional and invulnerable substrata showed no quantifiable pattern. However, invulnerable substrata in streams with more than 0.11 salmon m^?2 showed net algal accrual, or relatively smaller declines in algal biomass, than vulnerable substrata, indicating that large rocks provide refuge for benthic algae from salmon disturbance. 3. We expected that streams with proportionally larger rocks would respond positively to salmon at the whole‐stream scale, after accounting for the relative abundance of rocks of different sizes within streams. Invulnerable rocks made up only 0–12% of the total substratum particle size distribution in salmon‐bearing streams, however, and algal accrual on invulnerable substrata did not outweigh the strong disturbance effects on the more spatially extensive vulnerable substrata. The change in whole‐stream benthic algal biomass among streams was negatively related to salmon density. 4. Stable isotopes of nitrogen (δ¹⁵N) were used to track nutrients from salmon into benthic biota. Periphyton δ¹⁵N on rocks of all size classes was higher at peak salmon spawning than before the salmon run, indicating the uptake of salmon‐derived nitrogen. Peak δ¹⁵N values were positively related to salmon abundance and followed a two‐isotope mixing relationship. The per cent of N from salmon in periphyton was also related to salmon density and was best explained by a saturating relationship. Spring δ¹⁵N was unrelated to salmon returns in the previous year, suggesting little annual carryover of salmon nutrients.     

Colonisation of soft lining materials by micro‐organisms

doi:10.1111/j.1741‐2358.2009.00300.x
Colonisation of soft lining materials by micro‐organisms Objective: This study evaluated the in vitro adherence of pathogenic micro‐organisms, Candida albicans, Staphylococcus aureus and Pseudomonas aeruginosa, to soft lining materials and their inhibitory effect on these micro‐organisms. Materials and Methods: To measure adherence, specimens of Molloplast B and Ufi Gel P were inoculated [10⁷ colony‐forming units per millimetre (cfu/ml)] with TSB media containing the micro‐organisms. To determine the number of micro‐organisms in the 10^?2–10^?5 dilutions, 25 μl of the suspension were transferred to plates of selective media. Colony counts of each specimen were quantified (cfu/ml). The surface roughness was measured with a perfilometer to assess the relationship between the adherence of micro‐organisms and surface roughness of each material. For the inhibition test, specimens of materials were placed in agar plates inoculated individually with the micro‐organisms. After 48 h, the inhibition zones around the specimens were measured. Results: None of the materials exhibited inhibition zones. The number of cfu/ml of S. aureus and P. aeruginosa were significantly greater than C. albicans for both materials. The Ufi Gel P exhibited greater adherence of C. albicans than Molloplast B. No correlation was observed between the adherence of micro‐organisms and surface roughness. Conclusion: The surface roughness of the materials is not the only factor governing micro‐organism adherence.     

智利海洋沉积物中放线菌多样性

【目的】认识智利海洋沉积物中放线菌的多样性。【方法】分别采用选择性分离培养和非培养的基于16SrRNA基因序列系统发育分析方法,对来自智利南部海域海洋沉积物中放线菌多样性进行研究。采用6种选择性分离培养基分离放线菌;利用放线菌特异性引物对样品总DNA进行16SrRNA基因序列扩增并构建了16SrRNA基因克隆文库。分别挑选不同培养特征的22株放线菌和59个基因克隆进行16SrRNA基因序列的系统进化分析;测定分离的放线菌对海水的依赖性及产生抗菌活性化合物的能力。【结果】共分离到328株放线菌;挑选的22株放线菌分别属于小单孢菌属、多形孢菌属、链霉菌属、迪茨氏菌属、气微菌属和短状杆菌属;挑取的59个克隆属于40个分类单元,其中60%分类单元属于放线菌门放线菌亚纲、酸微菌亚纲和红色杆菌亚纲,另外40%的分类单元在放线菌内形成几个独立的进化分支,有可能代表放线菌新类群。22株放线菌有19株具有抗菌活性,50%的生长依赖海水的放线菌也具有抗菌活性。【结论】智利海域沉积物存在丰富的放线菌系统发育多样性并能产生活性次级代谢产物,而且还蕴藏丰富的新类型的放线菌资源。     

Quantitative evaluation of marine protein contribution in ancient diets based on nitrogen isotope ratios of individual amino acids in bone collagen: An investigation at the Kitakogane Jomon site

Nitrogen stable isotopes analysis of individual bone collagen amino acids was applied to archeological samples as a new tool for assessing the composition of ancient human diets and calibrating radiocarbon dates. We used this technique to investigate human and faunal samples from the Kitakogane shell midden in Hokkaido, Japan (5,300–6,000 cal BP). Using compound‐specific nitrogen isotope analysis of individual amino acids, we aimed to estimate i) the quantitative contribution of marine and terrestrial protein to the human diet, and ii) the mean trophic level (TL) from which dietary protein was derived from marine ecosystems. Data were interpreted with reference to the amino acid trophic level (TL_AA) model, which uses empirical amino acid δ¹⁵N from modern marine fauna to construct mathematical equations that predict the trophic position of organisms. The TL_AA model produced realistic TL estimates for the Kitakogane marine animals. However, this model was not appropriate for the interpretation of human amino acid δ¹⁵N, as dietary protein is derived from both marine and terrestrial environments. Hence, we developed a series of relevant equations that considered the consumption of dietary resources from both ecosystems. Using these equations, the mean percentage of marine protein in the Kitakogane human diet was estimated to be 74%. Although this study is one of the first systematic investigations of amino acid δ¹⁵N in archeological bone collagen, we believe that this technique is extremely useful for TL reconstruction, palaeodietary interpretation, and the correction of marine reservoir effects for radiocarbon dating. Am J Phys Anthropol 143:31–40, 2010. © 2010 Wiley‐Liss, Inc.     

红树内生细菌CⅢ-1菌株鉴定及其胞外抗菌蛋白性质研究

用对峙生长法从422株红树内生细菌中筛选到1株对青枯雷尔氏菌(Ralstonia solanacearum)、金黄色葡萄球菌(Staphylococcus aureus)、溶藻弧菌(Vibrio alginolyticus)、辣椒疫霉菌(Phytophthora capsici)、香蕉枯萎病菌(Fusarium oxysporum f. sp. cubense)等动植物病原细菌和真菌均具有较强的拮抗作用的海洋细菌CⅢ-1菌株, 经形态和生理生化特性及16S rRNA序列分析, 鉴定该菌株为解淀粉芽孢杆菌(Bacillus amyloliquefaciens)。用33%硫酸铵从菌株的培养滤液中盐析获得对供试病原菌均具有较强拮抗作用的抗菌活性蛋白, 性质测定发现, 该抗菌活性蛋白对热不稳定, 60?C和100?C下处理10 min, 其抗菌活性分别下降了62.5%和完全丧失, 在pH 5.0?10.0范围内均具有抑菌作用, 以pH 7.0时抗菌活性最强。