HomeRange: A global database of mammalian home ranges

Motivation

Home range is a common measure of use of space by animals because it provides ecological information that is useful for conservation applications. In macroecological studies, values are typically aggregated to species means to examine general patterns of use of space by animals. However, this ignores the environmental context in which the home range was estimated and does not account for intraspecific variation in home range size. In addition, the focus of macroecological studies on home ranges has historically been biased towards terrestrial mammals. The use of aggregated numbers and the terrestrial focus limit our ability to examine home-range patterns across different environments, their variation in time and variation between different levels of organization. Here, we introduce HomeRange, a global database with 75,611 home-range values across 960 different species of mammals, including terrestrial, aquatic and aerial species.

Main types of variables contained

The dataset contains estimates of home ranges of mammals, species names, methodological information on data collection, method of home-range estimation, period of data collection, study coordinates and name of location, in addition to species traits derived from the studies, such as body mass, life stage, reproductive status and locomotor habit.

Spatial location and grain

The collected data are distributed globally. Across studies, the spatial accuracy varies, with the coarsest resolution being 1°.

Time period and grain

The data represent information published between 1939 and 2022. Across studies, the temporal accuracy varies; some studies report start and end dates specific to the day, whereas for other studies only the month or year is reported.

Major taxa and level of measurement

Mammalian species from 24 of the 27 different taxonomic orders. Home-range estimates range from individual-level values to population-level averages.

Software format

Data are supplied as a comma-delimited text file (.csv) and can be loaded directly into R using the “HomeRange” R package ( https://github.com/SHoeks/HomeRange ).     

Adult feeding affects fecundity of the predator,Calosoma sycophanta (Col.: Carabidae)

Calosoma sycophanta L. adults were fed either gypsy moth (Lymantria dispar L.) larvae or split grapes for set periods of time while their reproduction was monitored. Few female beetles reproduced unless fed gypsy moth larvae during the first week after they ended hibernation. Even females initially fed grapes that were later fed larvae had reduced reproduction. The implications these results have for relationships between beetle and gypsy moth populations are discussed.     

道路建设对西南地区景观格局的影响

为揭示西南地区道路建设对景观格局的影响,基于2015年土地覆被和道路数据,计算了研究区道路核密度与景观指数,在此基础上分析了道路建设的直接、间接和综合影响,探讨了影响的空间异质性和对不同土地覆被影响的特点,指出了各景观指数的适用性。结果表明：(1)道路建设使斑块密度增加,斑块离散化加剧,发生明显的破碎化趋势,同时道路核密度与PD、SHDI、SPLIT变化百分比呈显著正相关,与COHESION、CONTAG、PAFRAC呈显著负相关;(2)道路建设对景观指数的影响程度由大到小依次表现在：破碎化、斑块空间分布形态、聚集连通性,其中PD能很好的表征道路建设对景观破碎化的作用程度,SPLIT在识别破碎化程度高的区域更具优势;(3)不同景观指数具有不同适用性,PAFRAC适用于道路不发达区域,CONTAG适用于道路分布异质性较高的区域,DIVISION适用于人类活动强度不大的区域,COHESION、SPLIT适用于探究道路及伴随的人类活动共同作用的区域,PD、SHDI在探究道路的直接作用时适用性广泛;(4)探究不同土地覆被类型受道路建设的影响,林地优先选取PD、DIVISION;草地优先选取DI...     

Exposure of preterm neonates to toxic metals during their stay in the Neonatal Intensive Care Unit and its impact on neurodevelopment at 2 months of age

BackgroundPremature neonates might be exposed to toxic metals during their stay in the neonatal intensive care unit (NICU), which could adversely affect neurodevelopment; however, limited evidence is available. The present study was therefore designed to assess the exposure to mercury, lead, cadmium, arsenic, and manganese of preterm neonates who received total parenteral nutrition (TPN) and/or red blood cell (RBC) transfusions during their NICU stay and the risk of neurodevelopment delay at the age of 2 months.MethodsWe recruited 33 preterm neonates who required TPN during their NICU admission. Blood samples were collected for metal analysis at two different time points (admission and before discharge). Metals in the daily TPN received by preterm neonates were analyzed. Neurodevelopment was assessed using the Ages and Stages Questionnaire Edition 3 (ASQ-3).ResultsAll samples of TPN had metal contamination: 96% exceeded the critical arsenic limit (0.3 μg/kg body weight/day); daily manganese intake from TPN for preterm neonates exceeded the recommended dose (1 µg/kg body weight) as it was added intentionally to TPN solutions, raising potential safety concerns. All samples of RBC transfusions exceeded the estimated intravenous reference dose for lead (0.19 µg/kg body weight). Levels of mercury, lead and manganese in preterm neonates at discharge decreased 0.867 µg/L (95% CI, 0.76, 0.988), 0.831 (95%CI, 0.779, 0.886) and 0.847 µg/L (95% CI, 0.775, 0.926), respectively. A decrease in ASQ-3-problem solving scores was associated with higher levels of blood lead in preterm neonates taken at admission (ß = −0.405, 95%CI = −0.655, −0.014), and with plasma manganese (ß = −0.562, 95%CI = −0.995, −0.172). We also observed an association between decreased personal social domain scores with higher blood lead levels of preterm neonates before discharge (ß = −0.537, 95%CI = −0.905, −0.045).ConclusionOur findings provide evidence to suggest negative impacts on the neurodevelopment at 2 months of preterm infants exposed to certain metals, possibly related to TPN intake and/or blood transfusions received during their NICU stay. Preterm neonates may be exposed to levels of metals in utero.     

高原鼢鼠土丘对矮嵩草草甸植被演替及土壤营养元素的作用

本文研究了矮蒿草草甸上高原酚鼠土丘的出现率及其对植被的覆盖状况,土丘高度的下降及其直径的变化,土丘植物地上生物量和土丘营养元素含量。高原鼢鼠土丘出现率为242个/只/年,合土壤干重为1023.82公斤/只/年,对植被的覆盖面积高达22.53平方米/只/年。土丘在地表滞留时间约1年,处于不同演替阶段植被区域内出现的土丘,其植物地上生物量间的差异显著。5月前,在原生植被区出现的土丘,经4个月后,土丘边缘形成环状富草区,士丘边缘至中心区形成环状贫草区,而土丘中心仍处于无草状况。在次生植被区上的土丘则无此现象。新土丘除速效钾的含量与对照区无显著差异外,速效氮、磷的含量显著地高于对照区。旧土丘土壤中的速效氮、磷、钾含量均低于新土丘,但氮、磷的含量仍高于对照区。     

Associating somatic mutation with clinical outcomes through kernel regression and optimal transport

Somatic mutations in cancer patients are inherently sparse and potentially high dimensional. Cancer patients may share the same set of deregulated biological processes perturbed by different sets of somatically mutated genes. Therefore, when assessing the associations between somatic mutations and clinical outcomes, gene-by-gene analysis is often under-powered because it does not capture the complex disease mechanisms shared across cancer patients. Rather than testing genes one by one, an intuitive approach is to aggregate somatic mutation data of multiple genes to assess their joint association with clinical outcomes. The challenge is how to aggregate such information. Building on the optimal transport method, we propose a principled approach to estimate the similarity of somatic mutation profiles of multiple genes between tumor samples, while accounting for gene–gene similarities defined by gene annotations or empirical mutational patterns. Using such similarities, we can assess the associations between somatic mutations and clinical outcomes by kernel regression. We have applied our method to analyze somatic mutation data of 17 cancer types and identified at least five cancer types, where somatic mutations are associated with overall survival, progression-free interval, or cytolytic activity.     

Effect of nitrogen application on growth and photosynthetic nitrogen use efficiency in two ecotypes of wild strawberry, Fragaria chiloensis

The relationships between increasing nitrogen fertilization and growth, maximum CO₂ assimilation and the initial slope of the CO₂ response curve were studied in 2 ecotypes of wild strawberry, Fragaria chiloensis (L.) Duchn. Nitrogen accumulation of CA11, an ecotype from a low-nutrient dune site, was greater at all nitrogen concentrations than that of RCP37, an ecotype from a higher-nutrient strand site. Maximum CO₂ assimilation, total Rubisco activity, dry weight, and initiation of leaves and crowns were higher in CAI1 than RCP37 as nitrogen treatment was increased from 0 to 200 mg ^l-1, whereas these parameters were lower in CAl1 when fertilized at 300 mg T¹, but not in RCP37. The mean leaf area of CA11 was greater than RCP37 when grown with no supplemental nitrogen, but mean leaf area of the 2 lines was similar under nitrogen fertilization. Maximum CO₂ assimilation and carboxylation efficiency increased with increasing leaf nitrogen in both clones. At equivalent concentrations of leaf nitrogen, RCP37 had higher CO₂ assimilation and carboxylation efficiency than CA11 and the difference between the 2 clones increased as ieaf nitrogen increased. Thus, RCP37 had a higher photosynthetic nitrogen use efficiency than CA11. However, at a given applied nitrogen level, CA11 allocated more nitrogen to a unit of leaf area so that photosynthetic rates were higher than RCP37, except at the highest application of 300 mg ^l-1. The high nitrogen accumulation capacity and resource allocation to fruiting structures (crowns) in CA11 leads us to suggest that this clone may possess genes that could increase fruit yield in cultivated strawberry.     

土壤水分和氮磷营养对冬小麦根系生长及水分利用的调节

模拟试验研究结果表明：在土壤相对含水量为４０％￣７０％范围内,水分亏缺严重,根水势和蒸腾蒸发量显著降低,根系生长严重受阻,根长变短,根干重降低,随着土壤水分趋于良好,根水势和蒸腾蒸发量显著增加,根干重在土壤相对含水量为５５％￣６２％之间时最大,而土壤相对含水量在５５％上下时根长达最长;土壤水分趋于轻度干旱有利根系下扎,土壤水分趋于良好利于根量增长。氮磷营养对小麦根系生长具有明显的调节作用。磷营养可     

The Physiological Ecology of Planktonic Sarcodines with Applications to Paleoecology: Patterns in Space and Time1

ABSTRACT. Planktonic sarcodines, suspended in the water column, are conveniently grouped into three categories based on functional morphology: (1) gymnamoebae and their relatives, which lack major living or nonliving compartmentalizing barriers, (2) foraminifera, and testate amoebae enclosed by a test or shell with one or more major openings, but lacking extensive cytoplasmic compartmentalizing barriers, and (3) radiolaria, which exhibit distinct compartmentalization of the cytoplasm into functional zones. Differences in feeding strategies and trophic activity of members in the three groups reflect in part these differences in functional morphology. Members of all three groups form symbiotic associations with Monera and protists, including algae, thus partially offsetting interspecific trophic competition among species occupying the same water mass. Physiological and morphological adaptations supporting a symbiotic association are presented. C¹⁴-labeling studies of endosymbiotic radiolarian species show a substantial contribution of carbon to the host. Rates of calcification (planktonic foraminfera) and silica deposition (radiolaria) are reported, based on morphometric analyses and isotopic labeling studies. Major distributional patterns in space and time for each of the three groups, and some ecological principles explaining these regularities, are presented as related to population growth dynamics, niche differentiation, water-mass properties, and the role of symbionts in supporting highly diverse communities of species within the same locale in the water column.     

桃花营养元素的分析与开发探讨

桃花含有较高的蛋白质和人体必需的各种氨基酸、维生素和微量元素。由于桃树在我国分布范围广泛,产花量大且需要人工疏花,使桃花的开发利用具有良好的条件。