Postglacial recolonization of North America by spadefoot toads: integrating niche and corridor modeling to study species’ range dynamics over geologic time

Understanding the factors that shape species’ distributions is a key topic in biogeography. As climates change, species can either cope with these changes through evolution, plasticity or by shifting their ranges to track the optimal climatic conditions. Ecological niche modeling (ENM) is a widespread technique in biogeography that estimates the niche of the organism by using occurrences and environmental data to estimate species’ potential distributions. ENMs are often criticized for failing to take species’ dispersal abilities into consideration. Here, we attempt to fill this gap by combining ENMs with dispersal and corridor modeling to study the range dynamics of North American spadefoot toads (Scaphiopodidae) over the Holocene. We first estimated the current and past distributions of spadefoot toads and then estimated their past distributions from the Last Glacial Maximum (LGM) to the present day. Then, we estimated how each taxon recolonized North American by using dispersal and corridor modeling. By combining these two modeling approaches we were able to 1) estimate the LGM refugia used by the North American spadefoot toads, 2) further refine these projections by estimating which of the putative LGM refugia contributed to the recolonization of North America via dispersal, and 3) estimate the relative influence of each LGM refugium to the current species’ distributions. The models were tested using previously published phylogeographic data, revealing a high degree of congruence between our models and the genetic data. These results suggest that combining ENMs and dispersal modeling over time is a promising approach to investigate both historical and future species’ range dynamics.     

Inferring the sources of postglacial range expansion in two large European land snails

Exact locations of glacial refugia are relevant for the study of contemporary biodiversity, not only as places less disturbed during the climatic changes but also as sources of rapid expansion of the biota after the Last Glacial cycle. If continuously inhabited over several of the Quaternary glacial cycles, the refugia are readily identifiable by the accumulated genetic diversity. However, the sources of the Holocene range expansion, particularly important for the emergence of present-day bio- and phylogeographic patterns and for realistic estimation of species’ expansion rates, might have been located at the fringes of the glacial species ranges and lack unique lineages. This problem is pertinent when the variation is explored at slowly evolving genetic markers. We suggest that the location of such source refugia may be approximated by reconstructing the geographic location as a continuous trait evolving along the branches of a phylogenetic tree. We applied this approach, using the BEAST software, on two large southeast European land snail species: Caucasotachea vindobonensis and Helix thessalica. We found evidence for C. vindobonensis refugia in the western Balkans; notable is an apparently old refugium in Bosnia and Herzegovina. The plausible sources of the species’ Holocene range expansion, however, were located around the south-western end of the Carpathians. Although the source areas were likely similar in H. thessalica, some expansion sources suggested by the analyses (e.g., Podolia, Ukraine) appeared implausible and driven by sampling clustered in that area. The applied approach allows for additional exploitation of the mitochondrial data gathered during the past two decades of animal phylogeography studies.     

浙江水源地河流浮游动物多样性与环境因子的通径分析

为探明水源地河流浮游动物多样性及与水环境因子的关系, 利用浮游动物多样性参数监测水质, 2010-2014年间, 我们于每年的冬季(1月)、春季(4月)、夏季(7月)和秋季(10月), 对浙江2个水源地河流采样站(H1站和H2站)展开浮游动物种类组成、丰度和多样性指数的季节性调查, 同时测定水环境因子。结果表明, H1站和H2站浮游动物平均丰度分别为1,387.4 ind./L和873.0 ind./L, 小型浮游动物(轮虫 + 桡足类无节幼体)丰度分别占92.8% (H1站)和91.5% (H2站)。两采样站轮虫、枝角类和桡足类的优势种均为针簇多肢轮虫(Polyarthra trigla)、短尾秀体溞(Diaphanosoma brachyurum)和温剑水蚤(Thermocyclops sp.)。多元逐步回归与通径分析结果表明: 冬季氮磷比是轮虫类Shannon-Wiener多样性指数(H′)波动的限制因子, 主要通过总磷含量对轮虫类H′指数产生较大的间接正向作用; 春季氮磷比是轮虫类H′指数发展的决策因子; 秋季氮磷比可通过总氮含量对轮虫类H′指数产生较大的间接正向作用。冬季氨氮、总氮含量分别是甲壳动物体积多样性指数(Hs)的决策因子和限制因子。夏季溶解氧含量是总浮游动物物种丰富度(d)波动的限制因子, 主要通过pH值对d指数产生较大的间接正向作用, 作用机制表现为轮虫类H′指数随着夏季溶解氧含量的升高呈极显著上升(P < 0.01), 而甲壳动物Hs指数则显著下降(P < 0.05)。水源地河流环境因子与浮游动物多样性之间的相互关系为浙江水源地生态学监测提供了可能性。     

Land masses and oceanic currents drive population structure of Heritiera littoralis,a widespread mangrove in the Indo‐West Pacific

Phylogeographic forces driving evolution of sea‐dispersed plants are often influenced by regional and species characteristics, although not yet deciphered at a large spatial scale for many taxa like the mangrove species Heritiera littoralis. This study aimed to assess geographic distribution of genetic variation of this widespread mangrove in the Indo‐West Pacific region and identify the phylogeographic factors influencing its present‐day distribution. Analysis of five chloroplast DNA fragments’ sequences from 37 populations revealed low genetic diversity at the population level and strong genetic structure of H. littoralis in this region. The estimated divergence times between the major genetic lineages indicated that glacial level changes during the Pleistocene epoch induced strong genetic differentiation across the Indian and Pacific Oceans. In comparison to the strong genetic break imposed by the Sunda Shelf toward splitting the lineages of the Indian and Pacific Oceans, the genetic differentiation between Indo‐Malesia and Australasia was not so prominent. Long‐distance dispersal ability of H. littoralis propagules helped the species to attain transoceanic distribution not only across South East Asia and Australia, but also across the Indian Ocean to East Africa. However, oceanic circulation pattern in the South China Sea was found to act as a barrier creating further intraoceanic genetic differentiation. Overall, phylogeographic analysis in this study revealed that glacial vicariance had profound influence on population differentiation in H. littoralis and caused low genetic diversity except for the refugia populations near the equator which might have persisted through glacial maxima. With increasing loss of suitable habitats due to anthropogenic activities, these findings therefore emphasize the urgent need for conservation actions for all populations throughout the distribution range of H. littoralis.     

Culture Independent Diversity of Bacterial Communities Indigenous to Lower Altitude at Laohugou Glacial Environment

Abstract

High-throughput sequencing approach of the 16S rRNA gene was employed to evaluate the bacterial diversity inhabit in melted water, snow, soil, and rocks samples at the lower altitudes of the Laohugou glacial environment. Bioinformatics tools were used to process millions of Illumina reads for alpha and beta diversities of bacterial communities. The diversity indices such as Chao, Shannon, and Simpson were different in the collected samples and solid samples (soil and rocks) showed higher taxon richness and evenness. Taxonomic diversity was unexpectedly higher and the major portion of sequences was assigned to Proteobacteria, Actinobacteria, and Acidobacteria. Higher variation in community structure was reported at the class level and Alphaproteobacteria was dominant. The solid niches were occupied by a higher number of phyla compared with liquid. The physicochemical variables acted as spatial gradients and associated with the bacterial structural communities of the glacial ecosystem. Findings showed that both Proteobacteria and Actinobacteria in solid samples influenced the bacterial community structure in downstream liquid samples. Interestingly, the metagenomic biomarkers were higher in liquid samples. This study provides precious datasets to understand the bacterial community in a better way under the influence of spatial, physical and environmental factors.     

Plant invasions in the rivers of the Iberian Peninsula,south-western Europe: A review

Aquatic and riparian ecosystems are known to be highly vulnerable to invasive alien species (IAS), especially when subjected to human-induced disturbances. In the last three decades, we have witnessed a growing increase in plant invasions in Portugal and Spain (Iberian Peninsula, south-western Europe), with very detrimental economic, social and ecological effects. Some of these species, such as the giant reed (Arundo donax L.) and the water hyacinth (Eichhornia crassipes (Mart.) Solms-Laub.), number among the world's worst weeds. We present an appraisal of this invasive alien river flora and the most problematic aquatic weeds. We review various aspects of invasion ecology, including spatial and temporal patterns of invasion, species invasiveness, species traits of invasive weeds, and relationships between human disturbance in rivers and surrounding areas and invasibility, and contextualize them in overall state-of-the-art terms. We also acknowledge the use of IAS as bioindicators of the ecological quality of rivers, wetlands and riparian zones. Remote-sensing tools and Geographic Information Systems for detecting and monitoring IAS in Iberian rivers are presented.     

Forecasting range expansion into ecological traps: climate‐mediated shifts in sea turtle nesting beaches and human development

Some species are adapting to changing environments by expanding their geographic ranges. Understanding whether range shifts will be accompanied by increased exposure to other threats is crucial to predicting when and where new populations could successfully establish. If species overlap to a greater extent with human development under climate change, this could form ecological traps which are attractive to dispersing individuals, but the use of which substantially reduces fitness. Until recently, the core nesting range for the Critically Endangered Kemp's ridley sea turtle (Lepidochelys kempii) was ca. 1000 km of sparsely populated coastline in Tamaulipas, Mexico. Over the past twenty‐five years, this species has expanded its range into populated areas of coastal Florida (>1500 km outside the historical range), where nesting now occurs annually. Suitable Kemp's ridley nesting habitat has persisted for at least 140 000 years in the western Gulf of Mexico, and climate change models predict further nesting range expansion into the eastern Gulf of Mexico and northern Atlantic Ocean. Range expansion is 6–12% more likely to occur along uninhabited stretches of coastline than are current nesting beaches, suggesting that novel nesting areas will not be associated with high levels of anthropogenic disturbance. Although the high breeding‐site fidelity of some migratory species could limit adaptation to climate change, rapid population recovery following effective conservation measures may enhance opportunities for range expansion. Anticipating the interactive effects of past or contemporary conservation measures, climate change, and future human activities will help focus long‐term conservation strategies.     

Spatial and temporal population genetic variation and structure of Nothotsuga longibracteata (Pinaceae), a relic conifer species endemic to subtropical China

Nothotsuga longibracteata, a relic and endangered conifer species endemic to subtropical China, was studied for examining the spatial-temporal population genetic variation and structure to understand the historical biogeographical processes underlying the present geographical distribution. Ten populations were sampled over the entire natural range of the species for spatial analysis, while three key populations with large population sizes and varied age structure were selected for temporal analyses using both nuclear microsatellites (nSSR) and chloroplast microsatellites (cpSSR). A recent bottleneck was detected in the natural populations of N. longibracteata. The spatial genetic analysis showed significant population genetic differentiation across its total geographical range. Notwithstanding, the temporal genetic analysis revealed that the level of genetic diversity between different age class subpopulations remained constant over time. Eleven refugia of the Last Glacial Maximum were identified, which deserve particular attention for conservation management.     

THE DISTRIBUTION AND ECOLOGY OF TWO MULLET SPECIES IN SOME FRESH WATER RIVERS IN THE EASTERN CAPE,SOUTH AFRICA

SUMMARY

Data on the relative abundance, penetration and breeding biology of the freshwater mullet Mugil cephalus and the flathead mullet Mugil cephalus in the freshwater reaches of some Eastern Cape coastal rivers are described. The differences found between the two species indicate that Myxus capensis is more specialized for a catadromous life history in an unstable riverine environment. Evidence showing the importance of the freshwater phase for the latter species is given and the disastrous effects of the erection of barriers to fish movement are stressed.