The in silico identification and characterization of a bread wheat/Triticum militinae introgression line

The capacity of the bread wheat (Triticum aestivum) genome to tolerate introgression from related genomes can be exploited for wheat improvement. A resistance to powdery mildew expressed by a derivative of the cross‐bread wheat cv. Tähti × T. militinae (Tm) is known to be due to the incorporation of a Tm segment into the long arm of chromosome 4A. Here, a newly developed in silico method termed rearrangement identification and characterization (RICh) has been applied to characterize the introgression. A virtual gene order, assembled using the GenomeZipper approach, was obtained for the native copy of chromosome 4A; it incorporated 570 4A DArTseq markers to produce a zipper comprising 2132 loci. A comparison between the native and introgressed forms of the 4AL chromosome arm showed that the introgressed region is located at the distal part of the arm. The Tm segment, derived from chromosome 7G, harbours 131 homoeologs of the 357 genes present on the corresponding region of Chinese Spring 4AL. The estimated number of Tm genes transferred along with the disease resistance gene was 169. Characterizing the introgression's position, gene content and internal gene order should not only facilitate gene isolation, but may also be informative with respect to chromatin structure and behaviour studies.     

新疆发现外来有害杂草——假苍耳

假苍耳为菊科假苍耳属植物,是我国入境植物检疫性有害生物之一,分布于辽宁、黑龙江、吉林、山东等省。2012年8月笔者在新疆塔城市发现假苍耳。2012年8月至2016年9月在新疆北疆地区的调查表明,假苍耳在新疆的分布地区仅为塔城市东货场至巴克图口岸的省道S221线公路旁、农田边、水沟、厂区等。     

烟田蓼科杂草的重要天敌--褐背小萤叶甲的行为习性

褐背小萤叶甲主要以幼虫和成虫取食叶肉及幼嫩生长点控制杂草,幼虫中以3龄幼虫为主要取食虫态。成虫可以多次交配,呈不连续产卵。成虫产卵以及2、3龄幼虫偏好叶背面,而雌雄成虫的取食对叶片正、背面选择性不明显。雄成虫、2、3龄幼虫具有较强的负趋光性,而雌成虫对光照则不敏感。褐背小萤叶甲对植株不同部位的叶片嗜好性为：上部叶〉中部叶〉下部叶。     

入侵植物剑叶金鸡菊的繁殖特征及其与入侵性之间的关系

入侵植物剑叶金鸡菊(Coreopsis lanceolata)既可进行有性繁殖, 又能进行克隆繁殖, 其繁殖特征可能对其入侵性具有重要影响, 然而目前相关研究较少。通过观测剑叶金鸡菊的花序开花动态、交配系统、种子萌发特性等有性繁殖特征及克隆繁殖特征, 研究了上述繁殖特性及其与入侵性之间的关系。结果表明, 剑叶金鸡菊每年4月下旬开始现蕾, 5-11月为花果期。单个花序的花期为5-6天, 至果实成熟开裂约18天。单个花序自交及同株异花授粉不亲和, 为异株异花授粉的异交型, 其花粉-胚珠比(P/O比)为103 549.40 ± 7 162.44。花序高花粉活力及本地蜂传粉行为保障了花粉资源, 因而结实率高达12 000粒∙株^-1。自然条件下其种子的萌发率高达50%以上, 且2-3天即可萌发。剑叶金鸡菊克隆繁殖能力非常强, 整个生长季节均可见从根蘖长出的密集型克隆分株, 8月下旬开始出现游击型克隆生长, 通过密集型和游击型克隆生长, 剑叶金鸡菊排斥其他物种形成单优种群。上述研究结果说明, 剑叶金鸡菊的入侵性与其繁殖特征密切相关。     

Production and characterization of a complete set of individual chromosome additions from Oryza officinalis to Oryza sativa using RFLP and GISH analyses

Monosomic alien addition lines (MAALs) are valuable materials for comparative analyses of two distinct genomes, for elucidating introgression mechanisms, and for dissecting genes controlling complex traits. In the study reported here, MAALs of rice containing the complete genome of Oryza sativa and individual chromosomes of Oryza officinalis were produced. Interspecific hybridizations were made between O. sativa L. ssp. Japonica (CV, Hejiang 19, 2 n=24, AA) and O. officinalis (Acc. HY018, 2 n=24, CC). Two backcrosses were made to the cultivated rice to obtain BC₂F₁ plants. Through RFLP and GISH analyses, 25 MAALs (2 n=25, AA+1C) were identified and divided into 12 syntenic groups, designated MAALs 1–12. MAALs 1, 2, 3, 5, 7 and 10 were each represented by one plant, MAALs 8, 11 and 12 by two plants, MAALs 6 and 9 by four plants, and MAAL 4 by five plants. An ideogram of the C-genome of O. officinalis was constructed, based on GISH analysis of the interspecific hybrid and the MAALs. Comparative RFLP maps showed strong syntenic associations between the A-genomes and C-genomes. Chromosomal arrangements such as translocations and duplications were detected in different alien chromosomes of the MAALs. The complete set of O. officinalis MAALs generated here provides a novel manipulation platform for exploiting and utilizing the O. officinalis genome and carrying out genetic studies.     

rbcL sequences reveal multiple cryptic introductions of the Japanese red alga Polysiphonia harveyi

In Europe, the last 20 years have seen a spectacular increase in accidental introductions of marine species, but it has recently been suggested that both the actual number of invaders and their impacts have been seriously underestimated because of the prevalence of sibling species in marine habitats. The red alga Polysiphonia harveyi is regarded as an alien in the British Isles and Atlantic Europe, having appeared in various locations there during the past 170 years. Similar or conspecific populations are known from Atlantic North America and Japan. To choose between three competing hypotheses concerning the origin of P. harveyi in Europe, we employed rbcL sequence analysis in conjunction with karyological and interbreeding data for samples and isolates of P. harveyi and various congeners from the Pacific and North Atlantic Oceans. All cultured isolates of P. harveyi were completely interfertile, and there was no evidence of polyploidy or aneuploidy. Thus, this biological species is both morphologically and genetically variable: intraspecific rbcL divergences of up to 2.1% are high even for red algae. Seven rbcL haplotypes were identified. The four most divergent haplotypes were observed in Japanese samples from Hokkaido and south-central Honshu, which are linked by hypothetical 'missing' haplotypes that may be located in northern Honshu. These data are consistent with Japan being the centre of diversity and origin for P. harveyi. Two non-Japanese lineages were linked to Hokkaido and Honshu, respectively. A single haplotype was found in all North Atlantic and Mediterranean accessions, except for North Carolina, where the haplotype found was the same as that invading in New Zealand and California. The introduction of P. harveyi into New Zealand has gone unnoticed because P. strictissima is a morphologically indistinguishable native sibling species. The sequence divergence between them is 4-5%, greater than between some morphologically distinct red algal species. Two different types of cryptic invasions of P. harveyi have therefore occurred. In addition to its introduction as a cryptic sibling species in New Zealand, P. harveyi has been introduced at least twice into the North Atlantic from presumed different source populations. These two introductions are genetically and probably also physiologically divergent but completely interfertile.     

Seasonality of macrophytes and interaction with flow in a New Zealand lowland stream

Introduced submerged macrophytes have come to dominate many shallow water bodies in New Zealand, and are a common component of many lowland streams. We investigated the seasonal variation of macrophyte abundance, its influence on flow and channel volume, and the implications of this on stream habitat and functioning in Whakapipi Stream, a typical lowland stream draining a predominantly agricultural catchment.Abundance of macrophytes over the summer was primarily controlled by the phenological cycles of the two dominant species. Mean minimum total macrophyte biomass (36 g m^–2) and cover (7%) occurred in winter (June and August, respectively), and mean maximum biomass (324 g m^–2), and cover (79%) occurred in late summer (March and February respectively). Egeria densa comprised the majority of both cover and biomass during the study period, except early summer (December) when Potamogeton crispus was prevalent in the shallow stream reaches.Macrophyte beds had a major impact on summer stream velocities, reducing average velocities by an estimated 41%. Stream cross-sectional area was maintained at relatively stable levels similar to that recorded over winter, when stream discharge was in the order of seven times greater. The mean velocity distribution coefficient (), and Manning's roughness coefficient (n) were dependent on and displayed a positive linear relationship with macrophyte abundance. The velocity distribution coefficient is recommended as a better indicator of macrophyte effects on velocity in natural streams, as it does not assume uniform velocity, channel depth and slope within the stream reach.Our study shows that submerged macrophytes play an important structuring role within the stream during the summer period, where macrophyte beds act as semi-permeable dams, retarding flow velocities and increasing stream depth and cross-sectional area. This promotes habitat heterogeneity by creating a greater range of flow velocity variation, and also provides large stable low-flow areas. Other likely ecosystem effects resulting from macrophyte/velocity interactions include increased sedimentation, potential for nutrient processing and increased primary production, both by macrophytes and attached epiphyton. The complex architecture of submerged macrophytes and their influence on stream flow may also provide an increased diversity of habitat for other aquatic biota. We propose that management of degraded lowland streams such as the Whakapipi Stream to maintain stretches with moderate quantities of submerged macrophytes interspersed with shaded areas would optimise stream health during low summer flows.     

Comparison of genetic diversity of the invasive weed Rubus alceifolius poir. (Rosaceae) in its native range and in areas of introduction, using amplified fragment length polymorphism (AFLP) markers

Theory predicts that colonization of new areas will be associated with population bottlenecks that reduce within-population genetic diversity and increase genetic differentiation among populations. This should be especially true for weedy plant species, which are often characterized by self-compatible breeding systems and vegetative propagation. To test this prediction, and to evaluate alternative scenarios for the history of introduction, the genetic diversity of Rubus alceifolius was studied with amplified fragment length polymorphism (AFLP) markers in its native range in southeast Asia and in several areas where this plant has been introduced and is now a serious weed (Indian Ocean islands, Australia). In its native range, R. alceifolius showed great genetic variability within populations and among geographically close populations (populations sampled ranging from northern Vietnam to Java). In Madagascar, genetic variability was somewhat lower than in its native range, but still considerable. Each population sampled in the other Indian Ocean islands (Mayotte, La Réunion, Mauritius) was characterized by a single different genotype of R. alceifolius for the markers studied, and closely related to individuals from Madagascar. Queensland populations also included only a single genotype, identical to that found in Mauritius. These results suggest that R. alceifolius was first introduced into Madagascar, perhaps on multiple occasions, and that Madagascan individuals were the immediate source of plants that colonized other areas of introduction. Successive nested founder events appear to have resulted in cumulative reduction in genetic diversity. Possible explanations for the monoclonality of R. alceifolius in many areas of introduction are discussed.     

Effects of a short fire‐return interval on resources and assemblage structure of birds in a tropical savanna

Fire frequency is a key land management issue, particularly in tropical savannas where fire is widely used and fire recurrence times are often short. We used an extended Before‐After‐Control‐Impact design to examine the impacts of repeated wet‐season burning for weed control on bird assemblages in a tropical savanna in north Queensland, Australia. Experimentally replicated fire treatments (unburnt, singularly bunt, twice burnt), in two habitats (riparian and adjacent open woodland), were surveyed over 3 years (1 year before the second burn, 1 year post the second burn, 2 years post the second burn) to examine responses of birds to a rapid recurrence of fire. Following the second burn, species richness and overall bird abundance were lower in the twice‐burnt sites than either the unburnt or singularly burnt sites. Feeding group composition varied across year of survey, but within each year, feeding guilds grouped according to fire treatment. In particular, abundance of frugivores and insectivores was lower in twice‐burnt sites, probably because of the decline of a native shrub that produces fleshy fruits, Carissa ovata. Although broader climatic variability may ultimately determine overall bird assemblages, our results show that a short fire‐return interval will substantially influence bird responses at a local scale. Considering that fire is frequently used as a land management tool, our results emphasize the importance of determining appropriate fire‐free intervals.