How to estimate variability in affinity relationships in partially observed groups of domestic herbivores?

Animal sociability measurements based on inter-individual distances or nearest-neighbour distributions can be obtained automatically with telemetry collars. So far, all the indices that have been used require the whole group to be observed. Here, we propose an index of the variability in affinity relationships in groups of domestic herbivores, whose definition does not depend on group size and that can be used even if some data are missing. This index and its estimators are based on a function that measures how frequently an animal is closer than another one from a third animal. When no data are missing, we show that our estimator and the variance of the sociability matrixsensu Sibbald (considered as the reference method) are strongly correlated. We then consider two cases of missing data. In the first case, some animals are randomly missing, that is, to account for random breakdown of telemetry collars. Our estimator is unbiased by such missing data and its variance decreases as the number of observation dates increases. In the second case, the same animals are missing at all observation dates, that is, in large herds where there are more individuals to be observed than available telemetry collars. Our estimator of affinity variance within a group is biased by such missing data. Thus, it requires changing animals equipped with telemetry collars regularly during the experiment. Conversely, the estimator remains unbiased at the population level, that is, if several independent groups are being analysed. We finally illustrate how this estimator can be used by investigating changes in the variability of affinities according to group size in grazing heifers.     

End-on microtubule-dynein interactions and pulling-based positioning of microtubule organizing centers

During important cellular processes such as centrosome and spindle positioning, dynein at the cortex interacts with dynamic microtubules in an apparent “end-on” fashion. It is well-established that dynein can generate forces by moving laterally along the microtubule lattice, but much less is known about dynein’s interaction with dynamic microtubule ends. In this paper, we review recent in vitro experiments that show that dynein, attached to an artificial cortex, is able to capture microtubule ends, regulate microtubule dynamics and mediate the generation of pulling forces on shrinking microtubules. We further review existing ideas on the involvement of dynein-mediated cortical pulling forces in the positioning of microtubule organizing centers such as centrosomes. Recent in vitro experiments have demonstrated that cortical pulling forces in combination with pushing forces can lead to reliable centering of microtubule asters in quasi two-dimensional microfabricated chambers. In these experiments, pushing leads to slipping of microtubule ends along the chamber boundaries, resulting in an anisotropic distribution of cortical microtubule contacts that favors centering, once pulling force generators become engaged. This effect is predicted to be strongly geometry-dependent, and we therefore finally discuss ongoing efforts to repeat these experiments in three-dimensional, spherical and deformable geometries.     

Analysis of Video-Based Microscopic Particle Trajectories Using Kalman Filtering

The fidelity of the trajectories obtained from video-based particle tracking determines the success of a variety of biophysical techniques, including in situ single cell particle tracking and in vitro motility assays. However, the image acquisition process is complicated by system noise, which causes positioning error in the trajectories derived from image analysis. Here, we explore the possibility of reducing the positioning error by the application of a Kalman filter, a powerful algorithm to estimate the state of a linear dynamic system from noisy measurements. We show that the optimal Kalman filter parameters can be determined in an appropriate experimental setting, and that the Kalman filter can markedly reduce the positioning error while retaining the intrinsic fluctuations of the dynamic process. We believe the Kalman filter can potentially serve as a powerful tool to infer a trajectory of ultra-high fidelity from noisy images, revealing the details of dynamic cellular processes.     

Distribution and function of actin in the developing stomatal complex of winter rye (Secale cereale cv. Puma)

Summary The dynamics of actin distribution during stomatal complex formation in leaves of winter rye was examined by means of immunofluorescence microscopy of epidermal sheets. This method results in actin localization patterns that are the same as those seen with rhodamine-phalloidin staining, but are more stable. During stomatal development MFs are extensively rearranged, and most of the time the orientation or placement of MFs is distinctly different from that of MTs, the exception being co-localization of MTs and MFs in phragmoplasts. Although MFs show an orientation similar to that of MTs in interphase guard mother cells, no banding of MFs into anything resembling the interphase MT band is observed. From prophase to telophase, a distinct, dense concentration of MFs is found in subsidiary cell mother cells (SMCs) between the nucleus and the region of the cell cortex facing the guard mother cell. Cytochalasin B treatment causes incorrect positioning of the SMC nucleus/daughter nuclei and abarrent placement and orientation of the new cell wall that forms the boundary of the subsidiary cell at cytokinesis. These results suggest that MFs are involved in maintaining the SMC nucleus in its correct position and the SMC spindle in the correct orientation relative to the division site previously delineated by the preprophase band. Because these MFs thus appear to assure that the SMC phragmoplast begins to form in the correct orientation near the division site to which it needs to grow, we suggest that MFs are involved in control of correct placement and orientation of the new cell wall of the subsidiary cell.Abbreviations CB cytochalasin B - DIC differential interference contrast - DMSO dimethylsulfoxide - MBS m-maleimidobenzoyl-N-hydroxylsuccinimide ester - MF microfilament - MT microtubule - PBS phosphate buffered saline - SMC subsidiary cell mother cell Dedicated to the memory of Professor Oswald Kiermayer     

Nuclear centering in Spirogyra: force integration by microfilaments along microtubules

The contribution of microtubules and microfilaments to the cytomechanics of transverse nuclear centering were investigated in the charophycean green alga Spirogyracrassa (Zygnematales). Cytoplasmic strands of enhanced rigidity and fasciate appearance radiate from the rim of the lenticular nucleus through the vacuole, frequently split once or twice and are attached to the helical chloroplast bands in the peripheral cytoplasm. The nucleus is encased in tubulin and a web of F-actin. Bundles of microtubules, emerging from the nuclear rim, are organized into dividing fascicles within the strands and reach to the inner surface of the chloroplast envelope. Organelles are translocated in both directions along similarly arranged fascicles of microfilament bundles which extend from the nucleus to the peripheral actin cytoskeleton. Application of microtubule- and/or microfilament-depolymerizing drugs affected the position of the nucleus only slowly, but in distinct ways. The differential effects suggest that nuclear centering depends on the tensional integrity of the perinuclear scaffold, with microfilaments conveying tension along stabilized microtubules and the actin cytoskeleton integrating the translocation forces generated within the scaffold. Received: 9 December 1996 / Accepted: 29 April 1997     

东湖通道工程对沿线底泥细菌群落结构和多样性的影响

为调查东湖通道工程对沿线底泥细菌群落结构和多样性可能造成的影响, 随着隧道施工的进程, 在东湖通道沿线的3个湖区中的19个采样点进行了3次采样, 通过PCR-DGGE结合分子克隆技术, 分析了细菌群落的群落结构及多样性。3批样品共检出细菌类群分别为5门18属、6门17属、5门11属。在门水平上, 底泥中的优势菌是变形菌门, 但其在总量中的比例随施工进程逐渐下降, 依次为86%、80.6%和43.9%。在属水平上, 施工初期的优势菌是埃希氏杆菌属, 施工后期却是Steroidobacter。通道施工初期, 汤菱湖、郭郑湖的湖心区域在属水平上的群落结构相似性较高, 与团湖差异显著; 接近施工区样点与远离施工区样点的底泥细菌群落存在显著差异; 因施工形成的临时封闭水域与敞水区除均有埃希氏杆菌属外, 其他菌属类群差异显著。施工后期的汤菱湖、郭郑湖及团湖的湖心区的底泥微生物群落结构趋于相似; 接近施工区样点与远离施工区样点的底泥细菌群落差异不显著; 封闭区和敞水区有相似的细菌群落结构。施工期间, 细菌群落的多样性指数的最高点都有出现在靠近施工区的位置。各批次样点的Simpson_1-D指数、Shannon_H指数、Margalef指数, 均随着施工进程而逐渐增加。因此, 东湖通道修建对通道沿线近距离的底泥细菌的群落结构和多样性产生了较显著的影响, 这种影响是暂时性还是持续性的, 尚需通道完工回填后的长期评估。研究将为进一步探讨通道修建等人为强干扰活动对浅水湖泊的可能环境影响和制定合理的生态修复策略提供理论基础和数据支撑。     

Chromosome misalignments induce spindle‐positioning defects

Cortical pulling forces on astral microtubules are essential to position the spindle. These forces are generated by cortical dynein, a minus‐end directed motor. Previously, another dynein regulator termed Spindly was proposed to regulate dynein‐dependent spindle positioning. However, the mechanism of how Spindly regulates spindle positioning has remained elusive. Here, we find that the misalignment of chromosomes caused by Spindly depletion is directly provoking spindle misorientation. Chromosome misalignments induced by CLIP‐170 or CENP‐E depletion or by noscapine treatment are similarly accompanied by severe spindle‐positioning defects. We find that cortical LGN is actively displaced from the cortex when misaligned chromosomes are in close proximity. Preventing the KT recruitment of Plk1 by the depletion of PBIP1 rescues cortical LGN enrichment near misaligned chromosomes and re‐establishes proper spindle orientation. Hence, KT‐enriched Plk1 is responsible for the negative regulation of cortical LGN localization. In summary, we uncovered a compelling molecular link between chromosome alignment and spindle orientation defects, both of which are implicated in tumorigenesis.     

Seasonal home ranges of elephants (Loxodonta africana) and their movements between Sabi Sand Reserve and Kruger National Park

We studied the seasonal home ranges and space use of three breeding herds of elephants (Loxodonta africana) for 3–5 years in an area comprising South Africa’s Sabi Sand Reserve (SSR) and Kruger National Park (KNP). Global Positioning System (GPS) transmitters were attached to the matriarchs of three herds and set to transmit a single daily location. Each herd was located in SSR 31%, 60% and 84% of the time. During the wet summer months, the herds walked longer distances and occupied larger seasonal home ranges than during the corresponding dry winter period. Core areas were centred on riverine habitats within both parks, with all three herds exhibiting closer distances to rivers and artificial water holes than would be expected if they were moving randomly. Home ranges within SSR overlapped much of the park. However, in KNP they occupied discrete areas with little overlap. Much of the movement between the two parks occurred along well‐defined corridors. This study shows that elephant herds depended upon the resources of both parks, providing an insight into their within‐ and between‐seasonal movements. This highlights the importance of ongoing co‐operation between wildlife managers from both parks when forming policy.     

“Inner GPS”, a far-reaching influence in brain research—For the Nobel Prize in Physiology or Medicine 2014

<正>On the day of Oct.6,2014,John O’Keefe and a Norwegian couple May-Britt Moser and Edvard Moser won the Nobel Prize in Physiology or Medicine for discovering the"inner GPS"that functions in the brain when the animals navigate through the world.The prize was awarded for their work in identifying the cells that make up the positioning system in the mammalian brain.