Behavioral response of termites to tunnel surface irregularity

Subterranean termites construct underground tunnels, tens to hundreds of meters in length, in order to search for and transport resources. Diverse soil conditions surrounding the tunnels, such as soil pores and differing moisture concentrations, may cause different sized- and shaped-irregularities in the tunnels. To understand how individual termites respond to the irregularities, the present study monitored the movement of termites, Coptotermes formosanus Shiraki, in artificially excavated tunnels with rectangular irregularities of varying sizes in two-dimensional sand substrates. Termites tunneled at some of the irregularities and not at the others. The tunneling or non-tunneling behavior resulted from four different responses. The non-tunneling response may result from a behavioral adaptation that allows termites to avoid wasting energy that may be used in foraging.     

Simulated microgravity induce glutathione antioxidant pathwayin Xenopus laevis embryos

Space flights cause a number of patho-physiological changes. Oxidative damage has been demonstrated in astronauts after space flights. Oxidative stress is due to an imbalance between production of oxidant and antioxidative defence. In embryos of Xenopus laevis, the glutathione system is an inducible antioxidant defence. For this reason, we investigated the effect of gravity deprivation on endogenous antioxidant enzymes in X. laevis embryos developed for 6 days in a Random Positioning Machine. The results show that glutathione content and the activity of antioxidant enzymes increase in RPM embryos, suggesting the presence of a protective mechanism. An induction of antioxidant defence might play an important role for animals to adapt to micro-gravitational stress, possibly during actual space flights.     

高山峡谷地区无线电遥测与GPS 空间定位的比较:野外放归大熊猫的跟踪定位

以佩戴具有无线电发射功能的GPS 颈圈(Lotek GPS_ 4400M) 的放归大熊猫“祥祥”作为目标动物, 2006 年4 月至2007 年2 月,采用无线电遥测技术(RT)和GPS 跟踪技术在卧龙自然保护区的“五一棚”区域, 每日监测大熊猫在野外环境下的生存状况、移动规律和觅食行为。为了比较RT 和GPS 在高山峡谷地区空间定位的可行性和有效性,我们引入空间定位率、地形特征、空间定位差、巢域大小和日移动距离等指标来分析RT 和GPS 之间的定位差异。结果表明:RT 的空间定位效率明显高于GPS 的自动定位(P < 0. 001),分别是54.1%(绘图法)和45. 2% (≧ 2D);不同月份RT 和GPS 的空间定位率之间具有显著性差异(P < 0. 05),这与大熊猫不同月份的海拔活动范围和觅食行为特性密切相关。RT 位点的地形指数中坡度高于GPS,坡向和海拔高度较GPS 定位点低,两种无线电遥测方法(两点直接计算法和绘图法)之间没有显著性差异(P > 0.05);同一天位点之间的距离(空间定位差)平均450 ～ 660 m 左右;RT 与GPS 所估测的大熊猫巢域大小,除5 月、9 月和12月RT 低于GPS 外,其余月份为前者高于后者,但无显著性差异(P > 0. 05);日移动距离除12 月份RT 小于GPS 外,其余月份都呈现出RT 大于GPS 的格局,统计检验结果两者之间差异显著(P < 0. 05);两种无线电遥测方法所测指数之间都无明显差异(P > 0. 05)。这说明RT 遥测和GPS 定位都可以应用于高山峡谷地区野生动物的生态学研究,而且GPS 无线电颈圈在亚高山和高山森林中具有可行性和有效性。     

Fine‐scale movements and use of space by spotted hyaena (Crocuta crocuta) on Ongava Game Reserve,Namibia

We deployed Global Positioning System (GPS) collars on spotted hyaena, Crocuta crocuta, on Ongava Game Reserve in northern Namibia. We analysed the movement profiles recorded from three periods of fine temporal scale (15 min interval) GPS data – dry season data from a sub‐adult female (36 days) and a lactating adult female (54 days), and wet season data from the same adult female (55 days). The hyaenas both had similar daily activity patterns – at rest between 12.00 and 18.00 hours, with a peak of activity in the 2‐h period around sunrise. They exhibited one or two active periods each night, travelling up to 30 km and being active for up to 10 h. Daily rest sites were widely distributed across the reserve, typically located on elevated ground and never revisited on consecutive days. In the dry season, both hyaenas made extensive use of the reserve, plus adjacent areas in Etosha National Park (sub‐adult home range 240 km², adult home range 366 km²). The wet season data for the adult female showed a significant reduction of space used (home range 232 km²). However, their utility distributions showed a nonuniform use of space, with multiple areas of high‐density utilization located away from open terrain.     

The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes

Nucleosomes impede access to DNA. Therefore, nucleosome positioning is fundamental to genome regulation. Nevertheless, the molecular nucleosome positioning mechanisms are poorly understood. This is partly because in vitro reconstitution of in vivo-like nucleosome positions from purified components is mostly lacking, barring biochemical studies. Using a yeast extract in vitro reconstitution system that generates in vivo-like nucleosome patterns at S. cerevisiae loci, we find that the RSC chromatin remodelling enzyme is necessary for nucleosome positioning. This was previously suggested by genome-wide in vivo studies and is confirmed here in vivo for individual loci. Beyond the limitations of conditional mutants, we show biochemically that RSC functions directly, can be sufficient, but mostly relies on other factors to properly position nucleosomes. Strikingly, RSC could not be replaced by either the closely related SWI/SNF or the Isw2 remodelling enzyme. Thus, we pinpoint that nucleosome positioning specifically depends on the unique properties of the RSC complex.     

Correlation between the flexibility and periodic dinucleotide patterns in yeast nucleosomal DNA sequences

Nucleosome formation and positioning, which play important roles in a number of biological processes, are thought to be related to the distinctive periodic dinucleotide patterns observed in the DNA sequence wrapped around the protein octamer. Previous research shows that flexibility is a key structural property of a nucleosomal DNA sequence. However, the relationship between the flexibility and the periodic dinucleotide patterns has received little attention in research in the past. In this study, we propose the use of three different models to measure the flexibility of yeast DNA sequences. Although the three models involve different parameters, they deliver consistent results showing that yeast nucleosomal DNA sequences are more flexible than non-nucleosomal ones. In contrast to random flexibility values along non-nucleosomal DNA sequences, the flexibility of nucleosomal DNA sequences shows a clear periodicity of 10.14 base pairs, which is consistent with the periodicity of dinucleotide distributions. We also demonstrate that there is a strong relationship between the peak positions of the flexibility and the dinucleotide frequencies. Correlation between the flexibility and the dinucleotide patterns of CA/TG, CG, GC, GG/CC, AG/CT, AC/GT and GA/TC are positive with an average value of 0.5946. The highest correlation is shown by CA/TG with a value of 0.7438 and the lowest correlation is shown by AA/TT with a value of −0.7424. The source codes and data sets are available for downloading on http://www.hy8.com/bioinformatics.htm.     

Separate to operate: control of centrosome positioning and separation

The centrosome is the main microtubule (MT)-organizing centre of animal cells. It consists of two centrioles and a multi-layered proteinaceous structure that surrounds the centrioles, the so-called pericentriolar material. Centrosomes promote de novo assembly of MTs and thus play important roles in Golgi organization, cell polarity, cell motility and the organization of the mitotic spindle. To execute these functions, centrosomes have to adopt particular cellular positions. Actin and MT networks and the association of the centrosomes to the nuclear envelope define the correct positioning of the centrosomes. Another important feature of centrosomes is the centrosomal linker that connects the two centrosomes. The centrosome linker assembles in late mitosis/G1 simultaneously with centriole disengagement and is dissolved before or at the beginning of mitosis. Linker dissolution is important for mitotic spindle formation, and its cell cycle timing has profound influences on the execution of mitosis and proficiency of chromosome segregation. In this review, we will focus on the mechanisms of centrosome positioning and separation, and describe their functions and mechanisms in the light of recent findings.     

两种模式生物核小体定位比较研究

在对两种模式生物酵母与果蝇胚胎期核小体定位进行研究时,发现不同物种间以及同一物种中不同表达模式基因上的核小体分布呈现出差显著异性。在总体上,转录起始位点附近的酵母核小体NFR区域比果蝇的NFR短。经基因中心对齐后,酵母与果蝇胚胎期沉默型基因的核小体缺失区域的两个边界中间处共同呈现了一个明确有着均匀间隔的核小体数n,且随着基因长度L的变长其周期性特性逐渐变模糊,但果蝇的图谱表现的更为复杂。结果表明,从单细胞酵母生物到多细胞果蝇生物间基因组的进化过程中,核小体组织的演化既有变异性,也具有保守性。