Complete genome sequencing of sixteen Francisella noatunensis subsp. orientalis isolates: A genomic approach for molecular characterization and spread dynamics of this clonal population

Francisella noatunensis subsp. orientalis (FNO) is an important emerging pathogen associated with disease outbreaks in farm-raised Nile tilapia. FNO genetic diversity using PCR-based typing, no intra-species discrimination was achieved among isolates/strains from different countries, thus demonstrating a clonal behaviour pattern. In this study, we aimed to evaluate the population structure of FNO isolates by comparing whole-genome sequencing data. The analysis of recombination showed that Brazilian isolates group formed a clonal population; whereas other lineages are also supported by this analysis for isolates from foreign countries. The whole-genome multilocus sequence typing (wgMLST) analysis showed varying numbers of dissimilar alleles, suggesting that the Brazilian clonal population are in expansion. Each Brazilian isolate could be identified as a single node by high-resolution gene-by-gene approach, presenting slight genetic differences associated to mutational events. The common ancestry node suggests a single entry into the country before 2012, and the rapid dissemination of this infectious agent may be linked to market sales of infected fingerlings.     

Partial decline of Arachis hypogaea L. photosynthesis triggered by drought stress

Photosynthetic capacity (PC) of three peanut cultivars (Arachis hypogaea L. cvs. 57-422, 73-30, and GC 8-35) decreased during drought stress (decline in relative water content from ca. 95 to 70 %) and recovered two days after rewatering. Mild water stress was not limiting for the total ribulose-1,5-bisphosphate carboxylase/oxygenase activity, since this enzyme activity increased under drought. Photosystem (PS) 2 and PS1 (the latter only in cv. GC 8-35) electron transport activities decreased under drought. The ratio of the variable to maximal chlorophyll fluorescence (Fv/Fm) decreased mainly in the cv. GC 8-35. All cultivars showed decreases in photochemical quenching (qP) and quantum yield of PS2 electron transport (Φe). Increase of basal fluorescence (F0) was observed in the cvs. 73-30 and GC 8-35, while the cv 57-422 showed a decrease. After rewatering a sharp increase was observed in the majority of the parameters. Thus under the present stress conditions, the cv GC 8-35 was the most affected for all the parameters under study. The cv. 57-422 showed a higher degree of tolerance being gradually affected in photosynthetic capacity (PC) in contrast to the two other cvs. which showed a sharp decrease in PC at the beginning of the drought cycle. This revised version was published online in September 2006 with corrections to the Cover Date.     

Use of resistant and susceptible potato cultivars in the trap cropping of potato cyst nematodes, Globodera pallida and G. rostochiensis

The effects of planting date and growing period of potato cultivars on their efficiency as trap crops for potato cyst nematodes (PCN) were studied. Plots were planted with susceptible or resistant cultivars in April, June and August and these were grown for 5, 6 or 7 wk before removal of the plants by hand lifting. Crops planted in June provided the best overall reductions in PCN population density of up to 95%, with cv. Santé significantly more effective than the other cultivars. Population reductions from the August planting were only slightly less than from planting in June but the tuber yields obtained were much greater: Maris Piper and Maris Bard produced 16.4 and 21.4 t ha^-1 respectively, with 37% and 43% respectively, of a size useful for canning (i.e. between 20 and 40 mm diameter).     

Rapid techniques for assessing fibre quality of flax breeding lines and cultivars using visible and near infrared spectroscopy, and thermal analysis

Fifteen different flax cultivars and breeding lines (E‐68, Baltu?iai, Belinka, Vega 2, Ilona, Elise, Kasty?iai, Evelin, 1963‐3, Ariane, Hermes, 01057‐12, 1698‐13a, 2017‐3, 1864‐24) were cultivated, harvested, water‐retted, scutched and resulting fibres passed through pin frames to produce representative samples for each variety. The aim of this investigation was to develop rapid techniques for assessing quality of fibre obtained from a comparative agronomical trial. The fibres produced were then assessed using visible and near infrared spectroscopy (Vis–NIRS), thermal analysis, scanning electron microscopy and airflow method for measuring fibre fineness. The relationships between agronomical characteristics, fibre fineness, thermal and spectral results were assessed using principal component analysis and partial least squares regression methods. The micrographs of the samples revealed the presence of residual pectic and cuticular tissues on all fibres, and significant differences between the 15 fibre samples were not observed. A significant relationship of the differences in fibre fineness of the test samples as measured by airflow method and Vis–NIR spectra was observed with an R² of 0.97 and standard error of calibration (SEC) of 1.69 dtex, and the former parameter also correlated with the measured thermal combustion parameters showing an R² of 0.91 and SEC of 2.86 dtex, indicating that the two rapid techniques could be used for the assessment of fibre quality of selected plants from the breeding programme. The advantages of using the two instrumental techniques compared with the existing airflow method are briefly discussed.     

Population dynamics of Oligonychus afrasiaticus in the southern Arava Valley of Israel in relation to date fruit characteristics and climatic conditions

1 Oligonychus afrasiaticus, the old world date mite, is a serious pest of dates in North Africa and the Near East, including Israel. It attacks and rapidly develops when the fruit is young and green. Mite phenology is affected by date cultivar, but the relationship between fruit characteristics and mite population development is unknown. 2 We report that mite establishment on the main cultivars grown in Israel, ‘Medjool’, ‘Barhi’ and ‘Deglet Noor’, began only when the water content of the fruit increased to ≥ 84%. Fruit bunch architecture and resistance to penetration, as well as sugar composition and content, were not key factors in mite establishment. 3 Later in the season, when total sugar levels reached ≥ 150 mg/g fresh fruit weight, total soluble solids comprised 15% and water content decreased to ≤ 75%, mite populations declined. 4 Yearly climatic variations could be responsible for phenological asynchrony between the pest and fruit development.     

Six new flavonoids from Citrus

Valencia orange (C. sinensis) and Robinson tangerine [(C. paradisi × C. reticulata) × (C. reticulata)] were examined for flavonoids. Thirteen flavonoids were isolated, six of which are new constituents of citrus peel. These are: 3,5,6,7,3′,4′-hexamethoxyflavone, 3,5,7,8,3′,4′-hexamethoxyflavone, 5-hydroxy-3,7,8,3′,4′-pentamethoxyflavone, 5-hydroxy-3,6,7,8,3′,4′-hexamethoxyflavone, 5,7,8,4′-tetramethoxyflavone and 5,7,8,3′,4′-pentamethoxyflavone. The latter three flavonoids are reported for the first time as natural products. A method is described for readily obtaining small quantities of 5,7,8,4′-tetramethoxy and 5,7,8,3′,4′-pentamethoxyflavones from their 5,6,7-trimethoxy analogs.     

不同抗性小麦品种上麦红吸浆虫幼虫的空间分布型与理论抽样数

【目的】为了解小麦品种抗性对麦红吸浆虫Sitodiplosis mosellana(Géhin)幼虫在麦穗上空间分布型的影响,为科学调查提供合理的抽样依据。【方法】2015年5月采用剥穗调查法对陕西省周至县试验田种植的4个抗虫和4个感虫小麦品种麦红吸浆虫幼虫危害进行调查,应用6种聚集度指标和Iwao M*?m回归法综合分析了幼虫在抗性不同小麦品种上的的空间分布结构。【结果】幼虫在抗、感小麦品种整穗及麦穗上、中、下部位上空间分布型一致,均呈聚集分布,但在抗虫品种上聚集强度大于感虫品种;抗、感小麦品种上分布的基本成分均为个体群,个体间相互吸引。聚集均数λ分析表明,幼虫在抗性较强品种上的聚集主要由小麦穗部化学物质和形态结构等环境因素引起,感虫品种上则由环境因素和成虫的产卵习性共同作用所致。幼虫在抗、感小麦品种上的发生趋势一致,均是上部发生最重,中部次之,下部最轻。根据Iwao回归法中的分布型参数,确立了幼虫在不同虫口密度和允许误差条件下的理论抽样数。【结论】麦红吸浆虫幼虫在抗性不同小麦品种上均呈聚集分布,调查时应根据当地栽培品种平均虫口密度选择适宜的抽样数量。     

Temporal variability of stream bioassessments using benthic macroinvertebrates

1. When using benthic macroinvertebrate communities for bioassessment, temporal variation may influence judgement as to whether or not a site is degraded.
2. In a survey of sixteen reference and sixteen test sites in the upper Thames River catchment area (UTRCA) in south-western Ontario, Canada, consistent differences between summer and winter samples were found for taxon richness (increase; P = 0.06) and the Family Biotic Index (decrease; P = 0.11). A bioassessment based on these results would indicate better water quality in the same streams in winter relative to summer. No consistent pattern of seasonal difference was detected for Simpson's Diversity and Equitability, or percentage Dominant Taxon.
3. The Reference Condition Approach to bioassessment uses predictive modelling to explain variation in reference communities with the environmental conditions at these sites as predictors. The community at a test site is compared with that predicted by the model. Several predictive models were constructed using simple geographic and habitat characteristics (i.e. catchment area, distance to source, stream width, substrate and habitat diversity) as predictors. By including season of sampling in the models, we increased their predictive power and the ability of the bioassessment to detect degradation. The best results were achieved when separate predictive models were built for each sampling season.