Contribution of bacterial cell nitrogen to soil humic fractions

Summary Living cells ofSerratia marcescens, uniformly labelled with¹⁵N, were added to samples of maple (Acer saccharum) and black spruce (Picea mariana) forest soils. After different periods of incubation from zero time to 100 days, the soils were subjected to alkali-acid and phenol extraction to provide humic acid, fulvic acid, humin and humoprotein fractions. Significant amounts of the cell nitrogen were recovered in the humic and fulvic acids immediately after addition. After incubation, less cell, nitrogen appeared in the humic acid and more in the fulvic acid. The amount of cell nitrogen recovered in the humin fraction increased with incubation. Roughly 5 to 10 per cent of the added cell nitrogen was found as amino acid nitrogen from humoprotein in a phenol extract of the humic acid. The data are consistent with the occurrence of co-precipitation of biologically labile biomass nitrogen compounds with humic polymers during the alkaline extraction procedure involved in the humic-fulvic fractionation.     

Nitrogen mineralization in acid sulfate soils

Summary Mineralization of soil nitrogen studies with two acid sulfate soils under anaerobic and aerobic incubation at 30°C for 2 weeks showed that the mineral N was released and accumulated entirely as NH ₄ ⁺ in both soils. Nitrification did not occur in either of the soils under conditions that stimulate nitrification. The acid sulfate soils studied release good amounts of mineralizable N, and, because of lack of nitrifying activity, denitrification may not be a serious problem in these soils.     

Assessing the suitability of five benthic indices for environmental health assessment in a large subtropical South American estuary

Despite the increased and widespread usage of benthic indices for environmental health assessment, some methodological ambiguities remain to be solved. We tested the congruence and consistency of the benthic indices ITI, BO2A, BENTIX, AMBI and M-AMBI in a subtropical estuary (Paranaguá Bay, Brazil). Indices were applied to non-vegetated tidal flats increasingly contaminated by sewage to test: (i) correlations with molecular biomarkers of sewage (consistency); and (ii) evaluate the overall agreement/similarity of responses (congruence). The responses of the benthic indexes ITI, AMBI and BO2A were congruent among themselves and consistent with molecular biomarkers values. BENTIX and M-AMBI were less consistent and congruent and possibly need a readjustment of boundaries for subtropical habitats. The indices seemed robust to natural background yearly variations not related to contamination. Faecal sterols associated to nutrient contents suitably supported the validation of indices and could integrate reference conditions for sewage impacted coastal habitats. Benthic indices can successfully integrate management guidelines, but their suitable application demands further research on tolerance shifts of key indicator species.     

Microstructure de CladochonusMcCoy, 1847(Tabulata,Carbonifère)

The microstructure of two species of Cladochonusfrom Algerian Carboniferous, C. crassus (McCoy) and C. cf. tenuicollisMcCoy, has been studied by ultra-thin sections. Their walls consist of: 1. an external fibrous layer, 2. a median layer of undulating lamellae, 3. an internal zone of slender, elongated elements to which the name of «grundulae is given here. New data bring complements to the generic diagnosis of Cladochonus s. str. Some Permian cladochonid forms show different microstructures and should, therefore, be shifted to new generic units.     

Transcellobiosylation Reactions Catalyzed by Different Exoglucanase Components of a Trichoderma viride Cellulase in Aqueous Organic Solvent

The contribution of three exoglucanases from a commercial Trichoderma viride cellulase to transcellobiosylation, and the tolerance of these enzymes to acetonitrile co-solvent were studied. The enzymatic reactions were performed with p-nitrophenyl-β-d-cellobioside as the starting substrate. Among these enzymes, the least anionic exoglucanase (Exo I) showed the highest transcellobiosylation activity and acetonitrile tolerance. Exo I retained considerable activity even in 30% MeCN/water and produced p-nitrophenyl-β-d-cellotetraoside at about 1.5% conversion from the initial substrate in 30% MeCN/water. The residual activity of Exo I after incubation in MeCN/water mixture was almost identical to that of the crude cellulase and a considerable amount of the transcellobiosylation properties of the crude cellulase seemed to be attributable to this Exo I component.     

CADMIUM AND MANGANESE ACCUMULATION IN PHYTOLACCA AMERICANA L. AND THE ROLES OF NON-PROTEIN THIOLS AND ORGANIC ACIDS

Phytolacca americana L. can accumulate large amounts of heavy metals in its aerial tissues, especially cadmium (Cd) and manganese (Mn). It has great potential for use in phytoextraction of metals from multi-metal-contaminated soils. This study was conducted to further investigate the Cd- and Mn-tolerance strategies of this plant. Concentrations of non-protein thiols (NPTs) and phytochelatins (PCs) in leaves and roots increased significantly as the concentration of Cd in solution increased. The molar ratios of PCs:soluble Cd ranged from 1.8 to 3.6 in roots and 8.1 to 31.6 in leaves, suggesting that the cellular response involving PC synthesis was sufficient to complex Cd ions in the cytosol, especially that of leaves. In contrast, excess Mn treatments did not result in a significant increase in NPT or PC concentrations in leaves or roots. Oxalic acid concentrations in leaves of plants exposed to 2 or 20 mM Mn reached 69.4 to 89.3 mg (0.771 to 0.992 mmol) g^–1 dry weight, respectively, which was approximately 3.7- to 8.6-fold higher than the Mn level in the 0.6 M HCl extract. Thus, oxalic acid may play an important role in the detoxification of Mn.     

Investigation of pulsed electromagnetic field as a novel organic pre-sowing method on germination and initial growth stages of cotton

Two different pre-sowing techniques have been investigated for their influence in an important industrial plant, namely cotton. Priming methods are very useful for agricultural practices because they improve crop seedling establishment, especially when environmental conditions are not optimum. Pulsed electromagnetic fields have been found to promote germination and improve early growth characteristics of cotton seedlings. Such priming techniques are especially valuable in organic cultivation, where chemical compounds are prohibited. PEG treatment showed an enhancement in some measurements, however in some cases the results were not statistically different compared to control plants. In addition, PEG treatment is a sophisticated method that is far from agricultural practices and farmers. In this research, two different ages of seeds were used (1- and 2-year-old) in order to investigate the promotory effects of priming techniques. Magnetic field treatment of 15 min was found to stimulate germination percentage and to promote seeds, resulting in 85% higher values than control seeds under real field conditions. Furthermore, seeds that were treated with magnetic field performed better in terms of early-stage measurements and root characteristics.     

Preparation of Silica Nanoparticles Through Microwave-assisted Acid-catalysis

Microwave-assisted synthetic techniques were used to quickly and reproducibly produce silica nanoparticle sols using an acid catalyst with nanoparticle diameters ranging from 30-250 nm by varying the reaction conditions. Through the selection of a microwave compatible solvent, silicic acid precursor, catalyst, and microwave irradiation time, these microwave-assisted methods were capable of overcoming the previously reported shortcomings associated with synthesis of silica nanoparticles using microwave reactors. The siloxane precursor was hydrolyzed using the acid catalyst, HCl. Acetone, a low-tan δ solvent, mediates the condensation reactions and has minimal interaction with the electromagnetic field. Condensation reactions begin when the silicic acid precursor couples with the microwave radiation, leading to silica nanoparticle sol formation. The silica nanoparticles were characterized by dynamic light scattering data and scanning electron microscopy, which show the materials'' morphology and size to be dependent on the reaction conditions. Microwave-assisted reactions produce silica nanoparticles with roughened textured surfaces that are atypical for silica sols produced by Stöber''s methods, which have smooth surfaces.     

Tissue damage in organic rainbow trout muscle investigated by proteomics and bioinformatics

The response to tissue damage is a complex process, which involves the coordinated regulation of multiple proteins to ensure tissue repair. In order to investigate the effect of tissue damage in a lower vertebrate, samples were taken from rainbow trout (Oncorhynchus mykiss) at day 7 after damage and proteins were separated using 2DE. The experimental design included two groups of rainbow trout, which were fed organic feed either with or without astaxanthin. In total, 96 proteins were found to be affected by tissue damage, clearly demonstrating in this lower vertebrate the complexity and magnitude of the cellular response, in the context of a regenerative process. Using a bioinformatics approach, the main biological function of these proteins were assigned, showing the regulation of proteins involved in processes such as apoptosis, iron homeostasis, and regulation of muscular structure. Interestingly, it was established that exclusively within the astaxanthin feed group, three members of the annexin protein family (annexin IV, V, and VI) were regulated in response to tissue damage.     

工业有机污染对小型水体沉积物真菌群落的影响分析

【背景】有机污染对水体沉积物中的微生物多样性影响极大,而目前有关污染水体沉积物中真菌多样性的研究较少。【目的】研究不同程度有机污染下水体沉积物中真菌种群的多样性特征,探究工业有机污染对真菌群落的影响。【方法】应用化学分析方法和高通量测序技术进行研究,并分析水质、沉积物成分等环境因子与沉积物真菌多样性的相关性。【结果】随着污染程度的降低,水体沉积物中真菌序列数、OTU数和Shannon多样性指数均呈上升趋势。未分类真菌、子囊菌门和担子菌门是沉积物真菌群落中的主要优势种类,主要优势属为Zopfiella、Westerdykella、Clypeosphaeria、Ilyonectria、Paracremonium、Aspergillus。真菌Shannon指数与水体溶解氧(dissolvedoxygen,DO)极显著正相关,与沉积物有机质和总磷含量显著负相关,Simpson指数与水体总氮(total nitrogen,TN)、氨氮(NH3-N)、总磷(total phosphorus,TP)显著相关。【结论】有机污染导致水体溶解氧下降和沉积物有机质增加,从而导致污染区真菌多样性显著下降。Zopfiella、Penicillium、Emericellopsis、Westerdykella、Jugulospora、Chromelosporium可能参与曝气处理区域沉积物兼氧条件下污染物的去除,Ilyonectria、Mortierella、Epicoccum可能主要参与水生生物残体分解、污染物的吸附沉降等过程。