Dramatic changes in the return date of Guillemots Uria aalge to colonies in Shetland, 1962–2005

Capsule Changes in return date coincided with marked changes in population size that probably resulted in fluctuating competition for nest-sites.

Aims To document the changes in return dates over a 44-year period and to identify the factors associated with these changes.

Methods We compared changes in return date at Shetland colonies with those for the Isle of May, southeast Scotland, and with the available information on population size, the abundance of some fish species eaten by Common Guillemots and large-scale changes in the oceanography and climate of the eastern Atlantic as reflected by the winter index of the North Atlantic Oscillation (NAO).

Results Common Guillemots normally return to colonies in Shetland in late winter. However, during the 1960s return dates became gradually earlier with birds present from early October. Autumn return remained the norm for about ten years after which return dates gradually reverted back to late winter. In contrast, Common Guillemots on the Isle of May, 400 km south of Shetland, showed no marked shift, returning in October each year. There was a strong negative correlation between date of return of Shetland birds and population size, whereas on the Isle of May birds came back earlier when there was a large positive winter NAO index. There was no convincing evidence that changes in wintering areas or fish abundance influenced when birds returned to the colonies, although the fish data may not have been collected on the correct spatial scale.

Conclusion Competition for high quality nest-sites is the most likely reason for Common Guillemots returning to the colonies during the autumn and winter.     

The Himalayas: Barrier and conduit for gene flow

The Himalayan mountain range is strategically located at the crossroads of the major cultural centers in Asia, the Middle East and Europe. Although previous Y‐chromosome studies indicate that the Himalayas served as a natural barrier for gene flow from the south to the Tibetan plateau, this region is believed to have played an important role as a corridor for human migrations between East and West Eurasia along the ancient Silk Road. To evaluate the effects of the Himalayan mountain range in shaping the maternal lineages of populations residing on either side of the cordillera, we analyzed mitochondrial DNA variation in 344 samples from three Nepalese collections (Newar, Kathmandu and Tamang) and a general population of Tibet. Our results revealed a predominantly East Asian‐specific component in Tibet and Tamang, whereas Newar and Kathmandu are both characterized by a combination of East and South Central Asian lineages. Interestingly, Newar and Kathmandu harbor several deep‐rooted Indian lineages, including M2, R5, and U2, whose coalescent times from this study (U2, >40 kya) and previous reports (M2 and R5, >50 kya) suggest that Nepal was inhabited during the initial peopling of South Central Asia. Comparisons with our previous Y‐chromosome data indicate sex‐biased migrations in Tamang and a founder effect and/or genetic drift in Tamang and Newar. Altogether, our results confirm that while the Himalayas acted as a geographic barrier for human movement from the Indian subcontinent to the Tibetan highland, it also served as a conduit for gene flow between Central and East Asia. Am J Phys Anthropol 151:169–182, 2013. © 2013 Wiley Periodicals, Inc.     

西藏高原云南松生物量模型及碳储量

云南松林是西藏高原亮针叶林生态系统的重要组成部分,准确估算其生态系统碳储量不但有助于弄清西藏森林生态系统固碳现状,而且可为准确估算青藏高原乃至全国森林生态系统的固碳潜力和固碳速率提供基础数据.本研究以云南松为研究对象,采用实地调查与建模相结合的方法,建立了各器官(叶、枝、干、根)与株高、胸径的生物量回归方程,并以此为基础计算了云南松幼龄林、中龄林、近熟林和成熟林生态系统的生物量和碳储量.结果表明:(1)用胸径和树高估测单株林木器官生物量的较优模型为指数模型,所建立的生物量回归方程相关性较好(R2＞0.90),估计精度较高.(2)在云南松幼龄林、中龄林、近熟林和成熟林生态系统中植被总生物量分别为(63.80±9.21)、(134.76+12.69)、(142.91±13.02)、(316.72+42.57)t·hm-2,其中乔木层生物量分别为(49.48±10.32)、(120.57±9.37)、(124.70±12.92)、(304.76±32.47)t·hm-2,灌草层生物量为(13.09±3.02)、(12.81±2.54)、(11.88±3.12)、(3.47±0.98)t·hm-2,凋落物生物量为(1.23±0.24)、(1.38±0.31)、(0.72±0.11)、(1.13±0.39)t·hm-2.(3)各龄级云南松林生态系统植被碳储量分别为(30.67±7.13)、(67.63±19.06)、(71.00±4.15)、(159.32±39.95)t·hm-2,碳储量随林龄增加的变化规律明显,碳汇潜力巨大.     

Determination of DNA methylation associated with Acer rubrum (red maple) adaptation to metals: analysis of global DNA modifications and methylation‐sensitive amplified polymorphism

Red maple (Acer rubum), a common deciduous tree species in Northern Ontario, has shown resistance to soil metal contamination. Previous reports have indicated that this plant does not accumulate metals in its tissue. However, low level of nickel and copper corresponding to the bioavailable levels in contaminated soils in Northern Ontario causes severe physiological damages. No differentiation between metal‐contaminated and uncontaminated populations has been reported based on genetic analyses. The main objective of this study was to assess whether DNA methylation is involved in A. rubrum adaptation to soil metal contamination. Global cytosine and methylation‐sensitive amplified polymorphism (MSAP) analyses were carried out in A. rubrum populations from metal‐contaminated and uncontaminated sites. The global modified cytosine ratios in genomic DNA revealed a significant decrease in cytosine methylation in genotypes from a metal‐contaminated site compared to uncontaminated populations. Other genotypes from a different metal‐contaminated site within the same region appear to be recalcitrant to metal‐induced DNA alterations even ≥30 years of tree life exposure to nickel and copper . MSAP analysis showed a high level of polymorphisms in both uncontaminated (77%) and metal‐contaminated (72%) populations. Overall, 205 CCGG loci were identified in which 127 were methylated in either outer or inner cytosine. No differentiation among populations was established based on several genetic parameters tested. The variations for nonmethylated and methylated loci were compared by analysis of molecular variance (AMOVA). For methylated loci, molecular variance among and within populations was 1.5% and 13.2%, respectively. These values were low (0.6% for among populations and 5.8% for within populations) for unmethylated loci. Metal contamination is seen to affect methylation of cytosine residues in CCGG motifs in the A. rubrum populations that were analyzed.     

Paleodistribution modeling suggests glacial refugia in Scandinavia and out‐of‐Tibet range expansion of the Arctic fox

Quaternary glacial cycles have shaped the geographic distributions and evolution of numerous species in the Arctic. Ancient DNA suggests that the Arctic fox went extinct in Europe at the end of the Pleistocene and that Scandinavia was subsequently recolonized from Siberia, indicating inability to track its habitat through space as climate changed. Using ecological niche modeling, we found that climatically suitable conditions for Arctic fox were found in Scandinavia both during the last glacial maximum (LGM) and the mid‐Holocene. Our results are supported by fossil occurrences from the last glacial. Furthermore, the model projection for the LGM, validated with fossil records, suggested an approximate distance of 2000 km between suitable Arctic conditions and the Tibetan Plateau well within the dispersal distance of the species, supporting the recently proposed hypothesis of range expansion from an origin on the Tibetan Plateau to the rest of Eurasia. The fact that the Arctic fox disappeared from Scandinavia despite suitable conditions suggests that extant populations may be more sensitive to climate change than previously thought.     

鸢尾属1新变型——白花宽柱鸢尾

描述了鸢尾科鸢尾属宽柱鸢尾(Iris latistyla Y.T.Zhao)的1个新变型——白花宽柱鸢尾(I.latistyla Y.T.Zhao f.albifloraJ.Luo)。原变型的花被为蓝紫色,而新变型花被为白色。并对其潜在的药用研究价值进行了讨论。     

藏区金腰种质资源调查与分析

金腰属植物因富含黄酮醇类化合物而具有显著的药效,通过对我国西藏、云南、四川、青海以及甘肃5个省(自治区)进行金腰属植物种质资源的科学考察,共收集到19种(含2变种)145份野生种质资源。此外四川省发现金腰新分布2种,分别为秦岭金腰(Chrysosplenium biondianum Engl.)、陕甘金腰(Chrysosplenium qinlingense Z.P.Jien&J.T.Pan),均为中国特有种;甘肃省发现金腰新分布3种,分别为毛金腰(Chrysosplenium pilosum Maxim.)、绵毛金腰(Chrysosplenium lanuginosum Hook.f.&Thomson)和蜕叶金腰(Chrysosplenium henryi Franch.),凭证标本存于中南民族大学植物标本馆(HSN)。金腰属植物作为传统藏药长期以来被用于治疗各种疾病,如长梗金腰(Chrysosplenium axillare Maxim.)的75%乙醇提取物具抗炎症、抗流感病毒活性,从灰花金腰(Chrysosplenium grayanum Maxim.)与裸茎金腰(Chrysosplenium nudicaule Bunge)提取的五环三萜对肿瘤细胞有较强抑制效果。本调查丰富了野生藏药金腰属植物种质资源,为深入研究金腰属植物的分类与药理活性提供了基础。     

十字花科植物种子低分子RNA提取方法比较

非编码RNA不翻译成蛋白质,它们通过转录、转录后及翻译水平调控靶基因表达,在植物生长发育及逆境胁迫中发挥功能。目前,大量种子萌发期特异表达的非编码RNA (Non-coding RNA)已被发现,高效提取种子低分子RNA是对其进行研究的关键。本研究将介绍一种改良SDS RNA提取方法,并与Trizol、CTAB法、RNA提取试剂盒进行比较。结果表明:这种方法可以高效提取用于Northern blotting、RT-PCR等分子生物学分析的十字花科植物种子低分子RNA。改良SDS RNA提取方法为种子非编码RNA研究、种子萌发生理及分子育种研究提供了帮助。     

基于高通量测序分析西藏北部高寒草甸不同深度土壤线虫群落分布特征

为了研究藏北高寒草甸土壤线虫多样性,于2017年8月,采用Illumina MiSeq测序技术,研究了西藏北部高寒草甸0—25 cm范围内不同深度土层的土壤线虫群落组成与结构特征。结果表明:5个不同深度共获得OTU 990个,隶属于3个纲,7个目,25个科,30个属,刺嘴纲Enoplea为共有优势土壤线虫群落;对样品进行Alpha多样性评价,计算Chao 1指数、Shannon指数和Ace指数,发现5—10 cm的土壤样品群落有较高的丰富度;属水平Heatmap图分析可知20—25、15—20、0—5、5—10、10—15 cm土壤线虫群落的组成相似性有一个递增的趋势。与不同深度藏北高山嵩草(盛长期)线虫群落结构相关性较大的土壤化学指标是K~+、含水率、有机质和Zn~(2+)。研究发现不同深度土壤线虫种类及丰度存在一定的差异,可为研究藏北高寒草地土壤线虫群落特点提供依据。