Two classes of glutathione S-transferase genes with different response profiles to bacterial challenge in Venerupis philippinarum

Glutathione S-transferase (GST) is major cytosolic detoxification enzymes involved in many pathological and physiological processes. In the present study, two classes of GSTs (VpGST-1 and VpGST-2) were cloned from Venerupis philippinarum haemocytes by cDNA library and RACE approaches. Sequence alignments and phylogenetic analysis together supported that they belonged to a new member of sigma and pi classes GSTs protein family, respectively. The expression profiles of these two genes under Vibrio anguillarum challenge were investigated by quantitative RT-PCR. The bacterial challenge could significantly up-regulate the mRNA expression of both VpGST-1 and VpGST-2 with larger amplitude in VpGST-2, and the feedback speed for VpGST-2 was more rapid than that of VpGST-1. The differences in the response to bacterial challenge indicated that they were functional diversity and probably played cooperative roles in mediating the Vibrio challenge in clam.     

Spatial and genetic investigation of aggregation in Ischnochiton (Polyplacophora; Neoloricata; Ischnochitonina; Ischnochitonidae; Ischnochitoninae) species with different larval development

Many species are aggregated at some spatial scale but for some species, due to habitat or behaviour, aggregation can be difficult to assess quantitatively. Here, aggregation of chiton species (Polyplacophora; Neoloricata; Ischnochitonina; Ischnochitonidae; Ischnochitoninae; Ischnochiton) living under boulders in intertidal boulder fields was investigated at several relatively small spatial scales. Closely related species were found to be aggregated at the level of individual boulders, but evidence for grouping at the larger scale of patches of boulders varied. When organisms are mobile, dispersal can have an important influence on spatial patterns. Some organisms, such as marine invertebrates, have a highly dispersive larval phase that can influence spatial patterns of adults, particularly where the adult is sessile or relatively sedentary. Aggregation was compared in two species to test whether different modes of larval development influence spatial pattern. There was some evidence that species with a planktonic larva were even more aggregated than expected, in contrast to predictions based on this mode of development. Both types of larval development (planktonic and non‐planktonic) produce larvae with short development times in these species, so one possible explanation for the grouping habit of these chitons is that they do not disperse, at all, from their natal boulder. The complexity of the boulder field habitat and the cryptic behaviour of these chitons may also contribute to a lack of dispersal. A simple application of a genetic method indicated, however, that philopatry at this scale is unlikely.     

A comparative study of mammalian diversification pattern

Although mammals have long been regarded as a successful radiation, the diversification pattern among the clades is still poorly known. Higher-level phylogenies are conflicting and comprehensive comparative analyses are still lacking. Using a recently published supermatrix encompassing nearly all extant mammalian families and a novel comparative likelihood approach (MEDUSA), the diversification pattern of mammalian groups was examined. Both order- and family-level phylogenetic analyses revealed the rapid radiation of Boreoeutheria and Euaustralidelphia in the early mammalian history. The observation of a diversification burst within Boreoeutheria at approximately 100 My supports the Long Fuse model in elucidating placental diversification progress, and the rapid radiation of Euaustralidelphia suggests an important role of biogeographic dispersal events in triggering early Australian marsupial rapid radiation. Diversification analyses based on family-level diversity tree revealed seven additional clades with exceptional diversification rate shifts, six of which represent accelerations in net diversification rate as compared to the background pattern. The shifts gave origin to the clades Muridae+Cricetidae, Bovidae+Moschidae+Cervidae, Simiiformes, Echimyidae, Odontoceti (excluding Physeteridae+Kogiidae+Platanistidae), Macropodidae, and Vespertilionidae. Moderate to high extinction rates from background and boreoeutherian diversification patterns indicate the important role of turnovers in shaping the heterogeneous taxonomic richness observed among extant mammalian groups. Furthermore, the present results emphasize the key role of extinction on erasing unusual diversification signals, and suggest that further studies are needed to clarify the historical radiation of some mammalian groups for which MEDUSA did not detect exceptional diversification rates.     

Rethinking the relationship between nestedness and beta diversity: a comment on Baselga (2010)

Baselga [Partitioning the turnover and nestedness components of beta diversity. Global Ecology and Biogeography, 19 , 134–143, 2010] proposed pairwise (β_nes) and multiple‐site (β_NES) beta‐diversity measures to account for the nestedness component of beta diversity. We used empirical, randomly created and idealized matrices to show that both measures are only partially related to nestedness and do not fit certain fundamental requirements for consideration as true nestedness‐resultant dissimilarity measures. Both β_nes and β_NES are influenced by matrix size and fill, and increase or decrease even when nestedness remains constant. Additionally, we demonstrate that β_NES can yield high values even for matrices with no nestedness. We conclude that β_nes and β_NES are not true measures of the nestedness‐resultant dissimilarity between sites. Actually, they quantify how differences in species richness that are not due to species replacement contribute to patterns of beta diversity. Finally, because nestedness is a special case of dissimilarity in species composition due to ordered species loss (or gain), the extent to which differences in species composition is due to nestedness can be measured through an index of nestedness.     

鲤鱼SOCS-4基因克隆、鉴定及表达模式分析

细胞因子是调节机体免疫和神经内分泌功能的生物活性物质,其信号的激发、放大和持续在时间和空间上都受到严格调控。细胞因子信号传导抑制因子(Suppressorof cytokine signaling,SOCS)是细胞因子信号通路的负调节因子,通过负反馈抑制细胞因子的信号传递,防止过度的信号反应干扰机体代谢平衡和细胞功能。在哺乳动物中,SOCS系统对生长激素(GH)、表皮生长因子     

中华鲟抗菌肽Hepcidin的克隆、表达及其抗菌活性分析

Hepcidin也称为铁调素,是在肝脏中特异表达的一种阳离子小分子抗菌肽。2000年,Krause,et al.首先从人血液中分离纯化得到了由25个氨基酸组成的LEAP-1抗菌肽[1]。2002年,Shike,et al.首次从杂交条纹鲈的鳃分离出鱼类Hepcidin,并从金眼狼鲈(Morone chrysops)克隆到     

斜带石斑鱼TLR3基因的克隆及其在刺激隐核虫感染时的表达分析

TLR3(Toll like receptor 3)是Toll样受体家族的重要成员,通过识别病原相关分子模式,诱导宿主天然免疫应答。研究从斜带石斑鱼(Epinephelus coioides)中克隆得到TLR3 cDNA序列,全长为2937 bp,包括107bp的5′非编码区、100 bp的3′非编码区和编码909个氨基酸的2730 bp的开放阅读框。TLR3全长氨基酸序列包含1个信号肽、18个富含亮氨酸的重复序列(Leucine-rich Repeat LRR)、1个跨膜结构域和1个胞内TIR结构域(IL-R1 homologous region)。同源比对显示,斜带石斑鱼TLR3与其他已报道硬骨鱼类的TLR3具有较高的同源性(52%—67%)。组织表达分析显示,TLR3在健康斜带石斑鱼的组织中具有较广的表达分布,其中在前脑、体肾和脾脏中表达量较高。刺激隐核虫(Cryptocaryon irritans)感染斜带石斑鱼后:在皮肤中TLR3的表达量呈现先降低后升高的趋势,从感染后第7天开始上调,并在第10天达到高峰;而在脾脏中,TLR3的表达量在感染6h时就显著上调并达到峰值。结果表明斜带石斑鱼TLR3在抗刺激隐核虫的免疫应答过程中可能发挥重要作用。