Detection of mycoplasma contaminations by the polymerase chain reaction

The polymerase chain reaction (PCR) has been used for the general detection ofMollicutes. 25Mycoplasma andAcholeplasma species were detected including important contaminants of cell cultures such asM. orale, M. arginini, M. hyorhinis, M. fermentans, A. laidlawii and additional human and animal mycoplasmas. PCR reactions were performed using a set of nested primers defined from conserved regions of the 16S rRNA gene. The detection limit was determined to be 1 fg mycoplasma DNA, which is equivalent to 1–2 genome copies of the 16S rRNA coding region. The identity of the amplification products was confirmed by agarose gel electrophoresis and restriction enzyme analysis. DNA from closely and distantly related micro-organisms did not give rise to specific amplification products. The method presented here offers a much more sensitive, specific and rapid assay for the detection of mycoplasmas than the existing ones.     

Microhabitat use by marsh-edge fishes in a Louisiana estuary

Synopsis We used a drop sampler to characterize use of the marsh-edge ecotone by small fishes along two transects running inland from the Gulf of Mexico for ca. 25 km in Louisiana's Barataria-Caminada Bay System. Monthly sampling was stratified among upper, middle, and lower reaches and within reaches to characterize fish responses to salinity, depth, distance from shore, substrate, dissolved oxygen concentration, temperature, turbidity, velocity, and emergent stem density. In 681 quantitative samples, covering 658 m², collected between October 1987 and October 1989, we collected 57 fish species and 16 864 individuals, primarily larvae and juveniles. The 15 most abundant fishes, comprising 97.7% of all individuals, were concentrated near the marsh edge (i.e., 0 to 1.25 m distance). Some significant differences within species for seasonal variables (e.g., temperature and dissolved oxygen concentration) reflected the ephemeral duration of early life history stages. Other differences reflected ontogenetic microhabitat shifts (e.g., depth and distance from shore). Within ecological groups, characterized as demersal residents, nektonic transients, and demersal transients, spatial and temporal segregation reflected the particular habitat requirements of each species. In a principal component analysis of microhabitat use, the first three components were interpreted as seasonal, depth-and-distance, and salinity axes, respectively. The array of species and size classes in principal component space reflected the complex dimensionality of microhabitat use. The high density of fish larvae and juveniles near the marsh edge confirmed the importance of the marsh-edge ecotone as a nursery for many estuarine-dependent fishes.     

浙西早寒武世梅树村期棒状化石

该文记述了浙江省西部江山县新塘坞地区灯影组(梅树村期)中新发现的矿化骨骼化石——浙江棒(新属)Zhejiangorhabdion gen.nov.。该化石的形态与以往化石类群均不相同,为个体微小的棒状,表面具较复杂的纹饰,不同个体间的纹饰都有一定变化,推测是动物体内不同部位的骨棒所具有的特征,代表了一个新的化石类群。新属的发现丰富了梅树村期动物群的内容,对了解具骨骼动物群体在这一时期的演化具有一定的意义。     

法尼醇X受体激动剂细胞筛选体系的建立与优化

本研究旨在建立一种基于双荧光素酶报告基因检测体系的法尼醇X受体(farnesoid X receptor, FXR)激动剂细胞筛选体系,以满足对FXR激动剂先导化合物的高通量筛选。通过在报告基因质粒pGL4-luc2P-Hygro中的萤火虫荧光素酶(firefly luciferase,Luc)基因上游克隆并插入来自FXR靶基因的FXR反应元件(FXR response element,FXRE)片段,构建用于筛选FXR激动剂的报告基因质粒,并结合海肾荧光素酶内参质粒,建立能够有效反映药物对FXR激动效应的双荧光素酶报告基因细胞检测体系。通过一系列优化实验,比较了过表达RXR、鼠源和人源FXR、不同的FXRE片段、FXR过表达质粒与报告基因质粒的混合比对筛选体系诱导效率和灵敏度的影响。根据上述结果,最终确定了优化条件,优化后体系Z因子达到0.83。本研究建立了一种用于FXR激动剂筛选的改良的基于双荧光素酶报告基因检测体系的细胞筛选体系,其主要特征在于,使用多段FXR靶基因上的FXRE片段叠加组成一种新型的增强型FXRE元件,而非传统的反向重复序列-1 (inverted repeats...     

PCR-mediated screening and labeling of DNA from clones

A simplified and economical protocol for DNA library screening and nonradioactive labeling is described. Bacterial clones are lysed in 1% of Triton X-100 and subjected to polymerase chain reaction in the presence of digoxigenin-11-dUTP to screen and simultaneously to label the DNA inserts. Bacteriallysates are stable in storage at −20°C and can be used repeatedly for PCR-mediated labeling. In this protocol, very low concentrations of dNTP, digoxigenin-dUTP, and primers are used in combination with a reduced reaction volume. This will considerably reduce the expense of screening and labeling bacterial clones and facilitate the exchange of DNA probes among laboratories.     

耐高温亚硝酸盐降解菌的分离、鉴定及降低雪茄烟叶亚硝胺的应用

【背景】烟草特有亚硝胺(tobacco-specific nitrosamines, TSNAs)是烟草于调制和发酵阶段产生的一类致癌物质,由烟草生物碱与氮氧化物发生亚硝化反应生成,生物碱和亚硝酸盐是TSNAs的直接前体物质。【目的】发掘适用雪茄高温发酵且显著降低TSNAs形成与积累的微生物。【方法】以TSNAs前体物质亚硝酸盐的高效降解为目标,对从雪茄烟叶分离得到的烟草源微生物菌株进行高温培养、亚硝酸盐降解及亚硝酸盐耐受能力研究,得到可于50℃高效降解亚硝酸盐及耐受高浓度亚硝酸盐的微生物菌株,将菌株应用于雪茄烟叶高温发酵35 d,对发酵前后亚硝酸盐、TSNAs、常规化学成分和中性香味成分含量进行测定,分析菌株在雪茄烟叶发酵中对TSNAs含量及烟叶品质的影响。【结果】获得了3株于50℃高效降解亚硝酸盐的菌株NY7、NY8和NY9,分别鉴定为莫海威芽孢杆菌(Bacillus mojavensis) NY7、耐盐芽孢杆菌(Bacillus halotolerans) NY8和枯草芽孢杆菌(Bacillus subtilis) NY9,其中B. halotolerans NY8亚硝酸盐降解能...     

Palynological and palaeobotanical investigations in the area of the post-medieval Helsinki Old Town

Pollen, phytolith, and plant macrofossil analyses were carried out on the cultural layers of Helsinki Old Town excavated by the Helsinki City Museum and dated to the 15–17th centuries. Cultural mineral soil layers, a former ditch, a well, one waste pit, one waste heap and three house areas were investigated. The results show that-within certain limits-pollen in the mineral soil reflects the cultural changes of the local settlement from rural to urban. Among the main anthropogenic indicators, the high NAP (non-arboreal pollen) frequencies, the low pollen concentration values, and especially the high frequencies of Cichoriaceae (Liguliflorae) pollen should be emphasized. The macrofossil data were used to determine the species list of the herb pollen and to make a more detailed reconstruction of the local vegetation at Helsinki Old Town.     

The effect of the Flemish breast cancer screening program on breast cancer-specific mortality: A case-referent study

BackgroundBreast cancer screening programs were introduced in many countries worldwide following randomized controlled trials in the 1980s showing a reduction in breast cancer-specific mortality. However, their effectiveness remains debated and estimates vary. A breast cancer screening program was introduced in 2001 in Flanders, Belgium where high levels of opportunistic screening practices are observed. The effectiveness of this program was estimated by measuring its effect on breast cancer-specific mortality.MethodsWe performed a case-referent study to investigate the effect of participation in the Flemish population-based mammography screening program (PMSP) on breast cancer-specific mortality from 2005 to 2017. A multiple logistic regression model assessed the association between breast cancer-specific death and screening program participation status in the four years prior to (pseudo)diagnosis (yes/no), with adjustment for potential confounders (individual socio-economic position and calendar year of diagnosis) and stratified for age. In addition, we performed different sensitivity analyses.ResultsWe identified 1571 cases and randomly selected 6284 referents. After adjustment, women who participated in PMSP had a 51 % lower risk of breast cancer-specific mortality compared to those who did not (adjusted odds ratio [aOR] =0.49, 95 % CI: 0.44–0.55). Sensitivity analyses did not markedly change the estimated associations. Correction for self-selection bias reduced the effect size, but the estimate remained significant.ConclusionOur results indicate that in a context of high opportunistic screening rates, participation in breast cancer screening program substantially reduces breast cancer-specific mortality. For policy, these results should be balanced against the potential harms of screening, including overdiagnosis and overtreatment.