Renaissance of mammalian endogenous RNAi

RNA interference (RNAi) denotes sequence-specific mRNA degradation induced by long double-stranded RNA (dsRNA). RNAi is an ancient eukaryotic defense mechanism against viruses and mobile elements. In mammals, endogenous RNAi was outstripped during evolution by the current innate and acquired immunity. The RNAi apparatus, which remains essentially intact, serves mostly the microRNA pathway, which regulates endogenous gene expression. Remarkably, several recent publications brought the mammalian endogenous RNAi pathway back into the spotlight. Here, I will provide an up-to-date review of the mammalian endogenous RNAi pathway with a focus on its defensive role and overlaps with miRNA and piRNA pathways.     

Trans-activation Response (TAR) RNA-binding Protein 2 Is a Novel Modulator of Transient Receptor Potential Canonical 4 (TRPC4) Protein

TRPC4 proteins function as Ca²⁺ conducting, non-selective cation channels in endothelial, smooth muscle, and neuronal cells. To further characterize the roles of TRPC4 in vivo, detailed information about the molecular composition of native channel complexes and their association with cellular signaling networks is needed. Therefore, a mouse brain cDNA library was searched for novel TRPC4-interacting proteins using a modified yeast two-hybrid assay. This screen identified Trans-activation Response RNA-binding protein 2 (Tarpb2), a protein that recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Tarbp2 was found to bind to the C terminus of TRPC4 and TRPC5 and to modulate agonist-dependent TRPC4-induced Ca²⁺ entry. A stretch of basic residues within the Tarbp2 protein is required for these actions. Tarbp2 binding to and modulation of TRPC4 occurs in the presence of endogenously expressed Dicer but is no longer detectable when the Dicer cDNA is overexpressed. Dicer activity in crude cell lysates is increased in the presence of Ca²⁺, most probably by Ca²⁺-dependent proteolytic activation of Dicer. Apparently, Tarbp2 binding to TRPC4 promotes changes of cytosolic Ca²⁺ and, thereby, leads to a dynamic regulation of Dicer activity, essentially at low endogenous Dicer concentrations.     

Dicer及其miRNAs是血管平滑肌细胞分化和增殖所必需的基因和调节因子

为了研究Dicer及其所产生的miRNAs在血管平滑肌细胞(VSMC)中的作用,本研究采用条件性基因打靶法敲除了小鼠VSMC中的Dicer外显子23,通过采用连续性剖检妊娠小鼠法、病理组织学、免疫荧光、PCR、Western blot和实时PCR等技术对条件性敲除Dicer(Dicer c KO)胚胎的血管病变和VSMC中的Dicer、miRNAs和信号转导通路蛋白变化进行了详细研究.结果发现,在培育条件性敲除Dicer小鼠的过程可产生三种不同基因型小鼠,即野生型、杂合型和纯合型(Dicer c KO)小鼠.其中野生型和杂合型小鼠出生后无明显临床异常,而Dicer c KO小鼠却死于腹中而不能出生.Dicer c KO胚胎在胚胎发育的第12.5天(E12.5)就出现发育迟滞变化,在E14.5,皮肤、骨骼肌和肝脏的血管极度扩张、血液淤滞和广泛的弥漫性出血,在E15.5死亡.Dicer c KO胚胎血管壁的病变于E13.5即出现,主要表现为血管中膜的VSMC排列不整,增生减少;E14.5血管壁变薄、塌陷,管腔不规则,细胞增生明显减少;E15.5血管壁的结构完全破坏,细胞增生停止,血管壁的屏障作用破坏,通透性增强,向外渗血.在胚胎发育的E14.5,VSMC标志性基因的表达明显下调,VSMC中大部分受检miRNAs的表达也明显降低,磷酸化的信号转导通路蛋白,即细胞外信号调节激酶和蛋白激酶明显衰减.研究证明,Dicer是血管发育所必需的基因,它可通过控制mi RNA产生和成熟来调节VSMC标志性基因的表达,借以促进VSMC的增殖与分化,保障血管壁结构的完整.     

Evolution and Diversification of RNA Silencing Proteins in Fungi

Comprehensive phylogenetic analyses of fungal Argonaute, Dicer, and RNA-dependent RNA polymerase-like proteins have been performed to gain insights into the diversification of RNA silencing pathways during the evolution of fungi. A wide range of fungi including ascomycetes, basidiomycetyes, and zygomycetes possesses multiple RNA silencing components in the genome, whereas a portion of ascomycete and basidiomycete fungi apparently lacks the whole or most of the components. The number of paralogous silencing proteins in the genome differs considerably among fungal species, suggesting that RNA silencing pathways have diversified significantly during evolution in parallel with developing the complexity of life cycle or in response to environmental conditions. Interestingly, orthologous silencing proteins from different fungal clades are often clustered more closely than paralogous proteins in a fungus, indicating that duplication events occurred before speciation events. Therefore, the origin of multiple RNA silencing pathways seems to be very ancient, likely having occurred prior to the divergence of the major fungal lineages. Electronic Supplementary Material Electronic Supplementary material is available for this article at and accessible for authorised users. [Reviewing Editor: Dr. Rüdiger Cerff]     

微小RNA研究进展

MicroRNAs(miRNAs)是一类长度为21-23核苷酸(nt)、进化上比较保守的非编码蛋白质的单链小RNA分子,它们一般通过Dicer酶从具有发夹二级结构的前体RNA加工而来。在真核生物的发育、基因表达等一系列过程中发挥了重要作用。     

miRNAs

The evolution of complex animals such as insects and mammals is achieved with surprisingly few additions in protein coding genes. MicroRNAs (miRNAs), a class of non-coding RNAs, have emerged as important regulators of organogenesis in insects, fish and mammals. The microRNA repertoire of animals has expanded significantly during evolution especially in vertebrates, insects and nematodes, accompanying the appearance of complex body plans. MicroRNAs therefore have gained enormous interest in recent years. They are now regarded as key modulators of gene expression in many tissues during embryogenesis, in adult organisms and in disease processes. Therefore, these small RNA molecules have entered the center stage of molecular biology and are promising candidates not only for the regulation of key biological processes such as proliferation and apoptosis, but also for therapy of human diseases.