An extension of presence/absence coefficients to abundance data: a new look at absence

Abstract. Alternative community analyses, based on quantitative and presence/absence data, are comparable logically if the data type is the only factor responsible for differences among results. For presence/absence indices that consider mutual absences, no quantitative alternatives are known. To facilitate such comparisons, a new family of similarity coefficients is proposed for abundance data. Formally, this extension is achieved by generalizing the four cells of the usual 2 × 2 contingency table to the quantitative case. This implies an expanded meaning of absence: for a given species at a given site it is understood as the difference between the actual value and the maximum detected in the entire study. The correspondence between 10 presence/absence coefficients and their quantitative counterparts is evaluated by graphical comparisons based on artificial data. The behaviour of the new functions is also examined using field data representing post‐fire regeneration processes in grasslands and a chronosequence pertaining to forest regeneration after clear‐cut. The examples suggest that the new coefficients are most informative for data sets with low beta‐diversity and temporal background changes.     

Hierarchical Perception of Stimuli During Case Construction in the Bagworm Moth Eumeta crameri (Lepidoptera: Psychidae)

We studied case construction behavior of bagworm moth, Eumeta crameri (Lepidoptera: Psychidac) in the host plant, Acacia nilotica, at two sites. At the time of the study, Site A had 1-year-old A. nilotica saplings only, whereas Site B had full grown trees. The larva of bagworm moth used either thorns or cut-twigs or both as the materials for building its case. It renovated its case three times, and during each instance it increased the volume of its case by replacing older thorns or cut-twigs by newer and longer ones. However, it exhibited a spectacular predilection for thorns, irrespective of the sites, during the first-instar stage of its development. Thereafter, at Site A it used exclusively cut-twigs, whereas at Site B it preferably used thorns provided they were available in the range of the required length and within the threshold distance. It appears that the bagworm has an ability to process thorn length and distance signals hierarchically to fulfill its priority, that is, case building. Thus it optimizes time and energy expenditures during the period of its larval growth leading to pupation by toggling its preference between thorns and cut-twigs.     

Vitellogenin Recognizes Cell Damage through Membrane Binding and Shields Living Cells from Reactive Oxygen Species

Large lipid transfer proteins are involved in lipid transportation and diverse other molecular processes. These serum proteins include vitellogenins, which are egg yolk precursors and pathogen pattern recognition receptors, and apolipoprotein B, which is an anti-inflammatory cholesterol carrier. In the honey bee, vitellogenin acts as an antioxidant, and elevated vitellogenin titer is linked to prolonged life span in this animal. Here, we show that vitellogenin has cell and membrane binding activity and that it binds preferentially to dead and damaged cells. Vitellogenin binds directly to phosphatidylcholine liposomes and with higher affinity to liposomes containing phosphatidylserine, a lipid of the inner leaflet of cell membranes that is exposed in damaged cells. Vitellogenin binding to live cells, furthermore, improves cell oxidative stress tolerance. This study can shed more light on why large lipid transfer proteins have a well conserved α-helical domain, because we locate the lipid bilayer-binding ability of vitellogenin largely to this region. We suggest that recognition of cell damage and oxidation shield properties are two mechanisms that allow vitellogenin to extend honey bee life span.     

The Perforin Pore Facilitates the Delivery of Cationic Cargos

Cytotoxic lymphocytes eliminate virally infected or neoplastic cells through the action of cytotoxic proteases (granzymes). The pore-forming protein perforin is essential for delivery of granzymes into the cytoplasm of target cells; however the mechanism of this delivery is incompletely understood. Perforin contains a membrane attack complex/perforin (MACPF) domain and oligomerizes to form an aqueous pore in the plasma membrane; therefore the simplest (and best supported) model suggests that granzymes passively diffuse through the perforin pore into the cytoplasm of the target cell. Here we demonstrate that perforin preferentially delivers cationic molecules while anionic and neutral cargoes are delivered inefficiently. Furthermore, another distantly related pore-forming MACPF protein, pleurotolysin (from the oyster mushroom), also favors the delivery of cationic molecules, and efficiently delivers human granzyme B. We propose that this facilitated diffusion is due to conserved features of oligomerized MACPF proteins, which may include an anionic lumen.     

Significance of riverine carbon transport: A case study of a large tropical river, Godavari (India)

Although riverine carbon fluxes are a minor component of the global carbon cycle, the transfer of organic carbon from land to ocean represents a flux of potential carbon storage, irreversible over 103 to 104 a. Future carbon transfers through river basins are expected to accelerate, with respect to both sources and sinks, because of the large-scale human driven land-use and land-cover changes. Thus, the increased amounts of carbon transported to and sequestered in marine sediments (through fertilization by river-borne inorganic nutrients) may be an important net sink for anthropogenic CO2. Particularly, the humid tropics of South Asia are regions very sensitive to this lateral C transport because of high precipitation and high rates of land use and cover change. In this paper we report on the role of upland tributaries in the transport processes influencing the lateral carbon and nitrogen fluxes of the Godavari, a large tropical river of India. By far, dissolved inorganic carbon (DIC) is the dominant form of carbontransport in the river basin. It constitutes as much as 75% to the total carbonload. Particulate and dissolved organic carbon (POC and DOC) fluxes account for21% and 4%, respectively. In the upper basin, DOC fluxes exceed that of POC dueto large-scale anthropogenic activities. In contrast, tributaries in the central basin are characterized by comparable fluxes of POC and DOC. However, downriver POC export is 35% less than the import from upriver and tributaries due to theentrainment of sediments in river channels and dam sites. We argue that for highly disturbed watersheds in tropical regions, downstream transport of sediments and carbon requires long-term sampling programmes.     

Psoriasis verrugosa en un hombre con antecedentes de psoriasis en placa,reporte de caso y revisión de la literatura

Verrucous psoriasis is an atypical and rare variant of psoriasis with few cases reported in the literature. It is characterized by the presence of symmetric hypertrophic and verrucous plaques on the limbs and trunk.We present the case of a 63-year-old male patient with a history of vulgar psoriasis for 20 years who was receiving treatment with topical steroids and had developed a verrucous plaque in the distal third of the posterior aspect of the leg 10 years before. We conducted a biopsy of the lesion to confirm or discard the diagnostic impression of squamous cell carcinoma (verrucous). The histopathological study showed changes compatible with verrucous psoriasis ruling out the presence of malignancy.     

Matched Case Control Studies with Random Exposure Effects

A method for analysing matched case control data in presence of overdispersion or correlation between observations within matched sets is presented. A generalised linear mixed model approach is adapted to account for overdispersion by allowing random exposure effects. Expressions for the elements of the estimation equation are derived and a strategy for achieving efficiency in computing is discussed. Results from simulation studies and two applications are presented.