艾比湖湿地芦苇根际土壤氨氧化古菌的多样性和群落结构

【目的】旨在揭示耐盐植物芦苇根际与非根际土壤AOA群落结构间的差异,为深入研究盐生植物根际土壤微生物与耐盐性之间的关系提供理论基础。【方法】应用高通量测序技术以氨单加氧酶基因(amoA)为分子标记,对新疆艾比湖湿地荒漠生态系统不同季节(春、夏、秋)芦苇根际与非根际土壤氨氧化古菌(AOA)的多样性和群落结构进行研究。【结果】结果表明,不同季节芦苇根际土壤AOA多样性和丰富度存在差异,相比非根际土壤,夏季和秋季芦苇根际土壤AOA多样性较低丰富度较高,春季多样性较高丰富度较低。芦苇根际土壤中AOA的多样性为春季夏季秋季。AOA群落组成分析表明,土壤样品中AOA群落主要集中在泉古菌门(Crenarchaeota)和奇古菌门(Thaumarchaeota),其中泉古菌门为主要优势菌门。RDA分析表明,含水量(SM)、有机质(SOM)、总氮(TN)和pH是影响芦苇根际土壤AOA群落多样性和丰富度的主要环境因子。【结论】不同季节芦苇根际土壤AOA多样性及丰富度存在差异,相比非根际土壤,芦苇根际土壤AOA更丰富。     

Prevalence of endoparasitic mites on four West African leaf‐litter frogs depends on habitat humidity

Amphibian species are known to carry endoparasitic mites. The infestation probability, prevalence, and intensity of mites vary among species and habitats. Mites of the genus Endotrombicula are known to infest African and Malagasy frogs. However, the factors leading to an increase in the probability of mite infestation are unknown. To test for inter‐ and intraspecific differences in infestation probability and its potential correlation with sex, age, habitat preferences, and/or season within a species‐rich West African leaf‐litter frog assemblage, we examined more than 6,800 individual frogs for the presence of mites throughout two independent time increments, 1999–2000 and 2016–2017. We found only members of the leaf‐litter frog genus Phyrnobatrachus to be infested, while other syntopically occurring genera were not affected. Within Phrynobatrachus, only four out of eight species were infested. Mites prevalence differed between species (highest P. phyllophilus, followed by P. alleni), sex (males higher than females in P. alleni and P. phyllophilus), and age (adults higher than juveniles in P. alleni), as well as season (more mites during wet than dry season in P. phyllophilus). The prevalence of mite infestation did not influence mate choice in P. alleni. Increased humidity showed a clear positive effect on infestation prevalence. We also detected a marked decrease in the prevalence of mites from 1999–2000 to 2016–2017, a period during which climatological changes within the study area have been reported with a tendency toward drier conditions. The decrease in mite infestation prevalence over time might be a signal of increasingly drier conditions.     

Soil and vegetation differences across ecological boundaries in an arid South African ecosystem

Boundaries are the most reactive nodes in landscapes and may be hypersensitive to global change in climate and land use. Investigations on how soils govern vegetation boundaries are scant, particularly in arid and semiarid ecosystems. The Tankwa Karoo National Park (TKNP) is a unique arid biodiversity hotspot with an unrivalled aridity gradient from < 100 mm MAP to about 700 mm in < 10 km. We investigated the abruptness of four soil‐vegetation boundaries separating eight communities. Two 50 m transects were established across four boundaries for 24 descending point transects, in which the cover‐abundance of each plant encounter at 1 m intervals was recorded. In addition, three soil samples were collected from the top 5 cm in each of the four boundaries and twelve patches. Soil and vegetation parameters altogether indicated three boundary syndromes that were context dependent: (a) a sharp boundary, (b) a gradual boundary or (c) no boundary exists. Soil respiration recorded here, and perhaps other ecosystem processes, was mediated by the soil‐vegetation boundaries. These nodes should be the focus of ecological studies since they reveal much more than the constituent patches themselves.     

Post-translational modifications in MeHg-induced neurotoxicity

Mercury (Hg) exposure remains a major public health concern due to its widespread distribution in the environment. Organic mercurials, such as MeHg, have been extensively investigated especially because of their congenital effects. In this context, studies on the molecular mechanism of MeHg-induced neurotoxicity are pivotal to the understanding of its toxic effects and the development of preventive measures. Post-translational modifications (PTMs) of proteins, such as phosphorylation, ubiquitination, and acetylation are essential for the proper function of proteins and play important roles in the regulation of cellular homeostasis. The rapid and transient nature of many PTMs allows efficient signal transduction in response to stress. This review summarizes the current knowledge of PTMs in MeHg-induced neurotoxicity, including the most commonly PTMs, as well as PTMs induced by oxidative stress and PTMs of antioxidant proteins. Though PTMs represent an important molecular mechanism for maintaining cellular homeostasis and are involved in the neurotoxic effects of MeHg, we are far from understanding the complete picture on their role, and further research is warranted to increase our knowledge of PTMs in MeHg-induced neurotoxicity.     

Changes in sediment phosphate composition of seasonal ponds during filling

Most ponds from the Doñana National Park are shallow temporary freshwater bodies on eolian sands. The total phosphate concentration and the fractional P-composition of the sediments from two small ponds were studied before and inmediately after they were filled (autumn, 1996). Total phosphorus concentration was measured in 2 different size fractions: 2–0.1 mm (coarse) and <0.1 mm (fine). In both ponds, the total phosphorus concentration of the fine sediment increased by 20% at the beginning of the filling period, whereas 5 weeks later it did not increase further. The percentage of organic matter of the fine sediment was relatively high (between 13–18%) and did not change significantly during filling. The concentration of sediment total iron and Fe(OOH) increased significantly in both ponds during filling. The sequential P fractionation of the fine sediment included, besides the determination of two inorganic fractions (Ca-bound P and Fe-bound P), an organic-P fraction extracted with acid, another extracted with alkali, two organic-P fractios from the Ca-EDTA/dithionite and the Na₂-EDTA extracts which contained high concentrations of humic substances. The pond sediments were rich in organic P compounds as the sum of all organic-P fractions ranged between 267 and 320 g g^-1 (68% and 79% of the sum of all fractions). Significant changes (P<0.01) in the fractional P-composition of sediments were found after filling. Acid soluble organic phosphate increased about 30% in both ponds. Iron-bound phosphate increased significantly (about 40%) only in the pond where a higher concentration of Fe(OOH) was measured after filling. An adsorption experiment was carried out for each sediment to simulate P input during filling. Both the iron-bound phosphate and Ca-bound P increased significantly (P<0.01) suggesting that these two fractions were involved in the P-adsorption during the laboratory experiment.     

Fracture toughness of mountain gorilla (Gorilla gorilla beringei) food plants

Mountain gorillas, the largest extant primates, subsist almost entirely on plant matter. Moreover, their diet includes a substantial amount of structural material, such as bark and stems, which other primates tend to avoid. Accordingly, the robust masticatory apparatus of gorillas may be adaptive to this presumably tough diet; however, quantitative information on this subject is lacking. In this study the fracture toughness of mountain gorilla foods was examined for the first time. Samples of 44 food plants from Bwindi-Impenetrable National Park (BINP) and Mgahinga Gorilla National Park (MGNP) were tested. These parks are inhabited by two gorilla populations that regarded by some as being distinct at the subspecific taxonomic level. Although food toughness did not differ between the two populations, both diets contained tough items. Tree barks were the toughest food items (varying from 0.23 to 8.2 kJ/m2), followed by shrub barks, pith, and stems. The toughness of leaves and fruit was negligible compared to that of bark. The toughness of bamboo was low in comparison to the toughest food items. Accordingly, the prominent toughness of bark, pith, and stems may be key factors in the evolution of orofacial robusticity in mountain gorillas.     

<Emphasis Type="Italic">Thermobaculum terrenum</Emphasis> gen. nov., sp. nov.: a non-phototrophic gram-positive thermophile representing an environmental clone group related to the Chloroflexi (green non-sulfur bacteria) and Thermomicrobia

A novel bacterium was cultivated from an extreme thermal soil in Yellowstone National Park, Wyoming, USA, that at the time of sampling had a pH of 3.9 and a temperature range of 65–92 °C. This organism was found to be an obligate aerobic, non-spore-forming rod, and formed pink-colored colonies. Phylogenetic analysis of the 16S rRNA gene sequence placed this organism in a clade composed entirely of environmental clones most closely related to the phyla Chloroflexi and Thermomicrobia. This bacterium stained gram-positive, contained a novel fatty-acid profile, had cell wall muramic acid content similar to that of Bacillus subtilis (significantly greater than Escherichia coli), and failed to display a lipopolysaccharide profile in SDS-polyacrylamide gels that would be indicative of a gram-negative cell wall structure. Ultrastructure examinations with transmission electron microscopy showed a thick cell wall (approximately 34 nm wide) external to a cytoplasmic membrane. The organism was not motile under the culture conditions used, and electron microscopic examination showed no evidence of flagella. Genomic G+C content was 56.4 mol%, and growth was optimal at 67 °C and at a pH of 7.0. This organism was able to grow heterotrophically on various carbon compounds, would use only oxygen as an electron acceptor, and its growth was not affected by light. A new species of a novel genus is proposed, with YNP1^T (T=type strain) being Thermobaculum terrenum gen. nov., sp. nov. (16S rDNA gene GenBank accession AF391972). This bacterium has been deposited in the American Type Culture Collection (ATCC BAA-798) and the University of Oregon Culture Collection of Microorganisms from Extreme Environments (CCMEE 7001).     

An approach to optimal wetland mitigation using mathematical programming and geographic information system based wetland function estimation

We developed and tested a quantitative geographic information system (GIS)-based approach for selecting wetland restoration sites. Our approach uses a combination of an existing wetland function evaluation program, a GIS and integer programming methodology with an objective to minimize cost of restoration subject to meet environmental requirements. Investigations were conducted on the formulation to examine the effects of problem size, site ordering for input, and restoration targets. The formulation could be solved for the largest problem size tested of 996 integer variables. The larger the problem, the more time it took to solve. Larger restoration targets usually took more sites and more time to solve. Sorting sites by size was found to lead to inefficient and often unfeasible solutions. Random sorting of sites was found to be the more efficient method of inputting restoration sites into analysis.     

Spatial and population genetic structure of microsatellites in white pine

We evaluated the population genetic structure of seven microsatellite loci for old growth and second growth populations of eastern white pine (Pinus strobus). From each population, located within Hartwick Pines State Park, Grayling, Michigan, USA, 120-122 contiguous trees were sampled for genetic analysis. Within each population, genetic diversity was high and inbreeding low. When comparing these populations, there is a significant, but small (less than 1%), genetic divergence between populations. Spatial distance between populations or timber harvest at the second growth site were reasonable explanations for the observed minor differences in allele frequencies between populations. Spatial autocorrelation analysis suggested that, for the old growth population, weak positive structuring at 15 m fits the isolation by distance model for a neighbourhood size of about 100 individuals. In comparison, genotypes were randomly distributed in the second growth population. Thus, logging may have decreased spatial structuring at the second growth site, suggesting that management practices may be used to alter natural spatial patterns. In addition, the amount of autocorrelation in the old growth population appears to be lower for some of the microsatellites, suggesting higher numbers of rare alleles and that higher mutation rates may have directly affected spatial statistics by reducing structure.