The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project

The PREDICTS project—Projecting Responses of Ecological Diversity In Changing Terrestrial Systems ( www.predicts.org.uk )—has collated from published studies a large, reasonably representative database of comparable samples of biodiversity from multiple sites that differ in the nature or intensity of human impacts relating to land use. We have used this evidence base to develop global and regional statistical models of how local biodiversity responds to these measures. We describe and make freely available this 2016 release of the database, containing more than 3.2 million records sampled at over 26,000 locations and representing over 47,000 species. We outline how the database can help in answering a range of questions in ecology and conservation biology. To our knowledge, this is the largest and most geographically and taxonomically representative database of spatial comparisons of biodiversity that has been collated to date; it will be useful to researchers and international efforts wishing to model and understand the global status of biodiversity.     

水洞沟遗址第2地点古人类“行为现代性”及演化意义

解剖学意义上的现代人及其行为的演化与扩散是古人类学和旧石器考古学关注的重大科学问题。本文对水洞沟第2地点生态、技术、经济社会组织和象征行为方面的行为特征进行分析,于不同的文化层揭示出了不同的创新行为,它们分别预示了不同的演化意义。距今4~2万年间中国北方连续发展的石片石器技术系统从人类行为角度支持中国古人类连续演化的假说,在此理论背景下,探求中国古人类的行为创新需要关注人类行为的演化历程,进而总结创新表现,而非将总结自欧非等地区的现代行为清单与中国的考古学材料简单比对,进而讨论行为的现代与否。现代人出现后中国古人类行为的特殊性和多样性,促使研究者更多地关注行为变异性及不同适应策略产生的原因,而非将一系列的特征总称为现代行为;同时提醒学者们不应以总结自旧大陆西部的现代行为清单衡量和定性中国乃至东亚旧石器时代晚期人群的生物学属性和社会行为能力。     

不同栖息地状态下外来种入侵及对本地种生存影响的模拟

外来种入侵引起的生态及经济问题日益严重,人类活动导致大规模栖息地持续变化的背景下,外来种的入侵过程及本地物种多样性的演化更为复杂.在Tilman多物种共存模型基础上,建立了栖息地持续变化条件下的外来种入侵干扰模式,分别模拟了栖息地不变、持续毁坏及持续恢复条件下的外来种入侵及对本地物种多样性的生态影响.模拟结果表明:(1)拓殖率小(入侵性弱)的外来种不能成功定殖,栖息地的持续变化对其没有任何影响.(2)拓殖率增大的外来种入侵过程复杂,栖息地持续毁坏导致其灭绝时间相比于栖息地不变时明显推迟,栖息地持续恢复使其灭绝提前;一定时间内持续增加栖息地可以减小此类外来种入侵危害.(3)拓殖率足够大的外来种能够成功定殖,快速定殖-扩散的入侵过程不会因栖息地毁坏而迅速改变,其响应具有时间滞后性;栖息地持续恢复也有利于其迅速蔓延,占有率呈线性疯狂增长.(4)在具有外来种入侵的本地生态系统中,栖息地持续改变(增加或减少)对本地物种多样性的发展均不利.     

Specific ratio and survival of Pseudomonas CF600 as co-culture for phenol degradation in continuous cultivation

Studies were carried out to understand parallel survival of two strains when cultivated as co-culture on a single carbon source in continuous cultivation. Strains used were Pseudomonas sp. strain CF600 that is reported for degradation of phenol; and HKR1 a lab strain, which was isolated from a site contaminated with phenol. In continuous cultivation Pseudomonas sp. CF600 showed an accumulation of colored intermediate, 2-hydroxy muconic semialdehyde (HMS), when fed with phenol as a sole source of carbon under dissolved oxygen limiting condition (40% saturation level). Under the same cultivation condition when it was co-cultured with strain HKR1, complete degradation of phenol was observed with no accumulation of intermediate. Different dilution rates (0.03, 0.15, and 0.30) were set in the bioreactor during cultivation. It was also observed that both the strains follow a typical cell density ratio of 1:18 as strain HKR1: Pseudomonas sp. CF600 irrespective of the dilution rates used in the study to favor degradation of phenol. Pseudomonas sp. CF600 is reported to degrade phenol via a plasmid-encoded pathway (pVI150). The enzymes for this meta-cleavage pathway are clustered on 15 genes encoded by a single operon, the dmp operon. PCR using primers from the different catabolic loci of dmp operon, demonstrated that the strain HKR1 follows a different metabolic pathway for intermediate utilization.     

生境变化对集合种群系统生态效应的影响

通过大量的数值模拟发现 :生境恢复或扩展将导致集合种群的强弱序由自然数的顺序规律演变为奇数种群强 -偶数种群弱 ,同时集合种群里的最优秀种群将迅速扩张、发展为更为强大的最优势种。而当生境遭受到破坏 (毁坏 ) ,集合种群里的最优秀种群将迅速地伦为最弱者。如果栖息地的毁坏率大于集合种群优势种对栖息地的占有率 ,不仅集合种群里的优势种群将不可避免地灭绝 ,伴随最优秀种群走向灭绝的种群依次还有第二、第三、第四强等的种群。同时 ,将导致集合种群的强弱序由自然数的顺序规律演变为偶数种群强 -奇数种群弱。     

Two Cases of Recovery of Dimorphic Pathogenic Fungi via Conventional BacT/ALERT<Superscript>®</Superscript> Microbial Detection System Media

We hereby report two instances of dimorphic fungus cultivation in BacT/ALERT^®-based bacteriologic media, with the first such characterization of Blastomyces dermatitidis. From a patient with disseminated coccidioidomycosis, routine blood cultures incubated on the MB/BacT^® 3D^? Microbial Detection System generated a positive signal following 75 h of incubation. B. dermatitidis was isolated from a patient hospitalized with a four-week course of respiratory illness. Organism detection from respiratory specimens via the MB/BacT^® 3D^? Mycobacteria Detection System occurred 5 days sooner than the routine fungus culture. Etiologic agents of endemic mycoses may be isolated in bacteriologic media employed by continuous monitoring instrumentation.     

On the impact of correlation between collaterally consanguineous cells on lymphocyte population dynamics

During an adaptive immune response, lymphocytes proliferate for five to twenty-five cell divisions, then stop and die over a period of weeks. Based on extensive flow cytometry data, Hawkins et al. (Proc Natl Acad Sci USA 104:5032–5037, 2007) introduced a cell-level stochastic model of lymphocyte population dynamics, called the Cyton Model, that accurately captures mean lymphocyte population size as a function of time. In Subramanian et al. (J Math Biol 56(6):861–892, 2008), we performed a branching process analysis of the Cyton Model and deduced from parameterizations for in vitro and in vivo data that the immune response is predictable despite each cell’s fate being highly variable. One drawback of flow cytometry data is that individual cells cannot be tracked, so that it is not possible to investigate dependencies in the fate of cells within family trees. In the absence of this information, while the Cyton Model abandons one of the usual assumptions of branching processes (the independence of lifetime and progeny number), it adopts another of the standard branching processes hypotheses: that the fates of progeny are stochastically independent. However, new experimental observations of lymphocytes show that the fates of cells in the same family tree are not stochastically independent. Hawkins et al. (2008, submitted) report on ciné lapse photography experiments where every founding cell’s family tree is recorded for a system of proliferating lymphocytes responding to a mitogenic stimulus. Data from these experiments demonstrate that the death-or-division fates of collaterally consanguineous cells (those in the same generation within a founding cell’s family tree) are strongly correlated, while there is little correlation between cells of distinct generations and between cells in distinct family trees. As this finding contrasts with one of the assumptions of the Cyton Model, in this paper we introduce three variants of the Cyton Model with increasing levels of collaterally consanguineous correlation structure to incorporate these new found dependencies. We investigate their impact on the predicted expected variability of cell population size. Mathematically we conclude that while the introduction of correlation structure leaves the mean population size unchanged from the Cyton Model, the variance of the population size distribution is typically larger. Biologically, through comparison of model predictions for Cyton Model parameterizations determined by in vitro and in vivo experiments, we deduce that if collaterally consanguineous correlation extends beyond cousins, then the immune response is less predictable than would be concluded from the original Cyton Model. That is, some of the variability seen in data that we previously attributed to experimental error could be due to intrinsic variability in the cell population size dynamics.      

南疆连作棉田几种有益细菌的动态变化规律

通过稀释涂布平板法研究农一师二团和三团不同连作年限棉田土壤中好气性自生固氮菌、钾细菌、纤维素分解细菌、无机磷细菌、有机磷细菌等有益土壤细菌的总数分布, 以探讨棉花连作对土壤微生物的影响及土壤微生物对棉花生长的影响。结果表明, 5种细菌菌数均在花铃期达到最高, 苗期最低, 受耕作制度影响, 播前期菌数较高。5种细菌菌数随棉花连作年限的增加没有表现出有规律的变化, 受棉花连作影响较小。好气性自生固氮菌菌数在二团各生育期均比三团高, 其他4种细菌在不同生育期变化各不相同。土壤有益细菌与土壤多种离子养分呈负相关, 自生固氮菌与土壤全氮呈显著正相关。     

Enhancement of growth rate and β-galactosidase activity, and variation in organic acid profile of Bifidobacterium animalis subsp. lactis Bb 12

The behavior of Bifidobacterium animalis subsp. lactis Bb 12 under batch cultivation, after continuous culturing for up to 12 d, was monitored in skim milk-based media. Previous continuous culture for longer than 6 d affected the physiology of said microorganism. The minimum inhibitory concentrations of lactic and acetic acids increased from 18 to 26 g/l, whereas the molar ratio of acetic to lactic acid increased from 0.8 to 1.55, when the previous continuous culture increased its duration from 1 to 12 d. The specific lactose consumption rate decreased from 0.94 to 0.77 g_lactose/g_{cell dry mass}/h within the batch culture timeframe; this was concomitant with greater amounts of acetic and formic acids, and lower amounts of lactic acid produced. The β-galactosidase activity increased as continuous culturing time increased, and reached 446 units/ml by 12 d; however, the rate of enzyme synthesis decreased concomitantly. Succinic acid was produced during the exponential growth and stationary phases of the batch culture, but the former at exponential growth phase was higher as the continuous culturing time was longer. For comparison purposes, batch cultivation of samples taken from continuous cultures by 1 and 12 d was done using a semi-synthetic medium with glucose as carbon source; a pattern similar to that observed when using skim milk-based media was observed.     

Effect of environmental conditions on the distribution of functional groups of microorganisms in the Khoito-Gol mineral springs (East Sayan)

The structure and functional activity of the microbial communities formed under different environmental conditions of the Khoito-Gol mineral springs are investigated. The habitat of microorganisms in the Khoito-Gol springs is characterized by abundant hydrogen sulfide and intense circulation of sulfur with the participation of sulfate-reducing, thionic, colorless, and purple bacteria. The main terminal process of microbial destruction of organic matter is sulfate reduction.