TPCs: Endolysosomal channels for Ca mobilization from acidic organelles triggered by NAADP

Two-pore channels (TPCs or TPCNs) are novel members of the large superfamily of voltage-gated cation channels with slightly higher sequence homology to the pore-forming subunits of voltage-gated Ca²⁺ and Na⁺ channels than most other members. Recent studies demonstrate that TPCs locate to endosomes and lysosomes and form Ca²⁺ release channels that respond to activation by the Ca²⁺ mobilizing messenger, nicotinic acid adenine dinucleotide phosphate (NAADP). With multiple endolysosomal targeted NAADP receptors now identified, important new insights into the regulation of endolysosomal function in health and disease will therefore be unveiled.     

Molecular dynamics simulations of human and dog gastric lipases: insights into domain movements

Mammalian gastric lipases are stable and active under acidic conditions and also in the duodenal lumen. There has been considerable interest in acid stable lipases owing to their potential application in the treatment of pancreatic exocrine insufficiency. In order to gain insights into the domain movements of these enzymes, molecular dynamics simulations of human gastric lipase was performed at an acidic pH and under neutral conditions. For comparative studies, simulation of dog gastric lipase was also performed at an acidic pH. Analyses show, that in addition to the lid region, there is another region of high mobility in these lipases. The potential role of this novel region is discussed.     

SPARC Suppresses Apoptosis of Idiopathic Pulmonary Fibrosis Fibroblasts through Constitutive Activation of ��-Catenin

Idiopathic pulmonary fibrosis (IPF) is a poorly understood progressive disease characterized by the accumulation of scar tissue in the lung interstitium. A hallmark of the disease is areas of injury to type II alveolar epithelial cells with attendant accumulation of fibroblasts in areas called fibroblastic foci. In an effort to better characterize the lung fibroblast phenotype in IPF patients, we isolated fibroblasts from patients with IPF and looked for activation of signaling proteins, which could help explain the exaggerated fibrogenic response in IPF. We found that IPF fibroblasts constitutively expressed increased basal levels of SPARC, plasminogen activator inhibitor-1 (PAI-1), and active β-catenin compared with control cells. Control of basal PAI-1 expression in IPF fibroblasts was regulated by SPARC-mediated activation of Akt, leading to inhibition of glycogen synthase kinase-3β and activation of β-catenin. Additionally, IPF fibroblasts (but not control fibroblasts) were resistant to plasminogen-induced apoptosis and were sensitized to plasminogen-mediated apoptosis by inhibition of SPARC or β-catenin. These findings uncover a newly discovered regulatory pathway in IPF fibroblasts that is characterized by elevated SPARC, giving rise to activated β-catenin, which regulates expression of downstream genes, such as PAI-1, and confers an apoptosis-resistant phenotype. Disruption of this pathway may represent a novel therapeutic target in IPF.     

A novel fusion protein of IP10-scFv retains antibody specificity and chemokine function

We combined the specificity of tumor-specific antibody with the chemokine function of interferon-gamma inducible protein 10 (IP-10) to recruit immune effector cells in the vicinity of tumor cells. A novel fusion protein of IP10-scFv was constructed by fusing mouse IP-10 to V(H) region of single-chain Fv fragment (scFv) against acidic isoferritin (AIF), and expressed in NS0 murine myeloma cells. The IP10-scFv fusion protein was shown to maintain the specificity of the antiAIF scFv with similar affinity constant, and bind to the human hepatocarcinoma SMMC 7721 cells secreting AIF as well as the activated mouse T lymphocytes expressing CXCR3 receptor. Furthermore, the IP10-scFv protein either in solution or bound on the surface of SMMC 7721 cells induced significant chemotaxis of mouse T cells in vitro. The results indicate that the IP10-scFv fusion protein possesses both bioactivities of the tumor-specific antibody and IP-10 chemokine, suggesting its possibility to induce an enhanced immune response against the residual tumor cells in vivo.     

A role for CBS domain 2 in trafficking of chloride channel CLC-5

CLC-5 is a member of the CLC family of voltage-gated chloride channels. Mutations disrupting CLC-5 lead to Dent's disease, an X-linked renal tubular disorder, characterised by low molecular weight proteinuria, hypercalciuria, nephrocalcinosis, and renal stones. Sequence analysis of CLC-5 reveals a 746 amino acid protein with an intracellular amino-terminus, transmembrane spanning domains, and two CBS domains within its intracellular carboxy-terminus. CBS domains have been implicated in intracellular targetting and trafficking as well as protein-protein interactions. We investigate subcellular localisation of three naturally occurring CLC-5 mutants which all lead to a truncated protein, disrupting the second CBS domain. These mutants are unable to traffic normally to acidic endosomes but are retained in perinuclear compartments, colocalising with the Golgi complex. This is the first identification of the cellular pathogenesis of CBS domain mutations of CLC-5.     

Functional expression and characterization of an acidic actinoporin from sea anemone Sagartia rosea

Src I is the first reported acidic actinoporin from sea anemone Sagartia rosea with a pI value of 4.8 and comprises 13.9% alpha-helix, 65.1% beta-sheet, and 18.2% random coil. For structure-function studies, Src I was expressed in Escherichia coli as a cleavable fusion protein. Recombinant Src I exhibited obviously hemolytic activity, but the fusion protein Trx-Src I almost lost its hemolytic activity, suggesting the importance of the N-terminal amphiphilic alpha-helix for its functional activity. The cytotoxic effects of Src I depending on the toxin concentration and incubation time were also observed on cultured cells. Among five cell lines: NIH/3T3, U251, NSCLC, BEL-7402, and BGC-823, NSCLC was the most sensitive cells with ID(50) 2.8 microg/ml and BGC-823 was the least sensitive cells with ID(50) 7.4 microg/ml. After incubated with lipid SUVs, such as SM-SUVs and SM/PC-SUVs, the hemolytic activity of Src I was inhibited to some extent. When incubated with calcein-entrapped lipid LUVs, such as SM-LUVs, SM/PC-LUVs, and SM/PG-LUVs, Src I induced release of entrapped calcein. According to the interaction with lipid vesicles, we proposed that it was the membrane matrix made up of phospholipids, not a particular phospholipid that facilitates Src I to react properly.     

The biogeochemistry of sulfur at Hubbard Brook

A synthesis of the biogeochemistry of S was done during 34 yr(1964–1965 to 1997–1998) in reference and human-manipulated forestecosystems of the Hubbard Brook Experimental Forest (HBEF), NH. There have beensignificant declines in concentration (–0.44µmol/liter-yr) and input (–5.44mol/ha-yr)of SO₄ ^2– in atmospheric bulk wet deposition, and inconcentration(–0.64 µmol/liter-yr) an d output (–3.74mol/ha-yr) of SO₄ ^2– in stream water ofthe HBEF since 1964. These changes arestrongly correlated with concurrent decreases in emissions of SO₂from the source area for the HBEF. The concentration and input ofSO₄ ^2– in bulk deposition ranged from a low of 13.1µmol/liter (1983–1984) and 211 mol/ha-yr(1997–1998) to a high of 34.7 µmol/liter(1965–1966) and 479 mol/ha-yr (1967–1968), with along-term mean of 23.9 µmol/liter and 336mol/ha-yr during 1964–1965 to 1997–1998. Despiterecentdeclines in concentrations, SO₄ ^2– is the dominantanion in both bulk deposition and streamwater at HBEF. Dry deposition is difficult to measure, especially inmountainousterrain, but was estimated at 21% of bulk deposition. Thus, average totalatmospheric deposition was 491 and 323 mol/ha-yr during1964–1969 and 1993–1998, respectively. Based on the long-term³⁴S pattern associated with anthropogenic emissions,SO₄ ^2– deposition at HBEF is influenced by numerousSO₂sources, but biogenic sources appear to be small. Annual throughfall plusstemflow in 1993–1994 was estimated at 346 molSO₄ ^2–/ha. Aboveground litterfall, for thewatershed-ecosystemaveraged about 180 mol S/ha-yr, with highest inputs (190 molS/ha-yr) in the lower elevation, more deciduous forest zone. Weatheringrelease was calculated at a maximum of 50 mol S/ha-yr. Theconcentration and output of SO₄ ^2– in stream waterranged from a low of 42.3µmol/liter (1996–1997) and 309 mol/ha-yr(1964–1965), to a high of 66.1 µmol/liter(1970–1971) and 849 mol/ha-yr (1973–1974), with along-term mean of 55.5 µmol/liter and 496mol/ha-yr during the 34 yrs of study. Gross outputs ofSO₄ ^2– in stream water consistently exceeded inputsin bulkdeposition and were positively and significantly related to annualprecipitationand streamflow. The relation between gross SO₄ ^2–output and annual streamflow changed with time asatmospheric inputs declined. In contrast to the pattern for bulk depositionconcentration, there was no seasonal pattern for streamSO₄ ^2– concentration. Nevertheless, stream outputs ofSO₄ ^2– were highly seasonal, peaking during springsnowmelt, andproducing a monthly cross-over pattern where net hydrologic flux (NHF) ispositive during summer and negative during the remainder of the year. Nosignificant elevational pattern in streamwaterSO₄ ^2– concentration was observed. Mean annual,volume-weightedsoil water SO₄ ^2– concentrations were relativelyuniform by soil horizon andacross landscape position. Based upon isotopic evidence, much of theSO₄ ^2– entering HBEF in atmospheric depositioncycles throughvegetation and microbial biomass before being released to the soil solution andstream water. Gaseous emissions of S from watershed-ecosystems at HBEF areunquantified, but estimated to be very small. Organic S (carbon bonded andestersulfates) represents some 89% of the total S in soil at HBEF. Some 6% exists asphosphate extractable SO₄ ^2– (PSO₄).About 73% of the total S in the soilprofile at HBEF occurs in the Bs2 horizon, and some 9% occurs in the forestfloor. The residence time for S in the soil was calculated to be 9 yr, butonly a small portion of the total organic soil pool turns over relativelyquickly. The S content of above- and belowground biomass is about 2885mol/ha, of which some 3–5% is in standing dead trees. Yellowbirch, American beech and sugar maple accounted for 89% of the S in trees, with31% in branches, 27% in roots and 25% in the lightwood of boles. The pool of Sin living biomass increased from 1965 to 1982 due to biomass accretion, andremained relatively constant thereafter. Of current inputs to the availablenutrient compartment of the forest ecosystem, 50% is from atmospheric bulkdeposition, 24% from net soil release, 11% from dry deposition, 11% from rootexudates and 4% is from canopy leaching. Comparing ecosystem processes for Sfrom 1964–1969 to 1993–1998, atmospheric bulk deposition decreasedby 34%, stream output decreased by 10%, net annual biomass storage decreased by92%, and net soil release increased by 184% compared to the 1964–1969values. These changes are correlated with decreased emissions of SO₂from the source area for the HBEF. Average, annual bulk deposition inputsexceeded streamwater outputs by 160.0 ± 75.3 SD molS/ha-yr,but average annual net ecosystem fluxes (NEF) were much smaller, mostlynegativeand highly variable during the 34 yr period (–54.3 ± 72.9 SDmol S/ha-yr; NEF range, +86.8 to –229.5). While severalmechanisms may explain this small discrepancy, the most likely are netdesorption of S and net mineralization of organic S largely associated with theforest floor. Our best estimates indicate that additional S from dry depositionand weathering release is probably small and that desorption accounts for about37% of the NEF imbalance and net mineralization probably accounts for theremainder (60%). Additional inputs from dry deposition would result fromunmeasured inputs of gaseous and particulate deposition directly to the forestfloor. The source of any unmeasured S input has important implications for therecovery of soils and streams in response to decreases in inputs of acidicdeposition. Sulfate is a dominant contributor to acid deposition at HBEF,seriously degrading aquatic and terrestrial ecosystems. Because of the strongrelation between SO₂ emissions and concentrations ofSO₄ ^2– in both atmospheric deposition and streamwater at HBEF,further reductions in SO₂ emissions will be required to allowsignificant ecosystem recovery from the effects of acidic deposition. Thedestruction or removal of vegetation on experimental watershed-ecosystems atHBEF resulted in increased rates of organic matter decomposition andnitrification, a lowering of soil and streamwater pH, enhancedSO₄ ^2– adsorption on mineral soil and smallerconcentrations andlosses of SO₄ ^2– in stream water. With vegetationregrowth, this adsorbedSO₄ ^2– is released from the soil, increasingconcentrations andfluxes of SO₄ ^2– in drainage water. Streamwaterconcentration ofSO₄ ^2– and gross annual output ofSO₄ ^2–/ha are essentially the same throughout theHubbard BrookValley in watersheds varying in size by about 4 orders of magnitude, from 3 to3000 ha.     

N-Acetylaspartylglutamate Inhibits Forskolin-Stimulated Cyclic AMP Levels via a Metabotropic Glutamate Receptor in Cultured Cerebellar Granule Cells

Abstract: The neuronal dipeptide N -acetylaspartylglutamate (NAAG) fulfills several of the criteria for classification as a neurotransmitter including localization in synaptic vesicles, calcium-dependent release after neuronal depolarization, and low potency activation of N -methyl- d -aspartate receptors. In the present study, the influence of NAAG on metabotropic receptor activation in cerebellar granule cells was examined in cell culture. Stimulation of granule cell adenylate cyclase with forskolin increased cyclic AMP (cAMP) several hundredfold above basal levels within 10 min in a concentration-dependent manner. Although gluta-mate, NAAG, and the metabotropic receptor agonist frans-1-amino-1, 3-cyclopentanedicarboxylic acid did not alter the low basal cAMP levels, the application of 300 μ M glutamate or NAAG or trans-1-amino-1, 3-cyclopentanedicarboxylic acid reduced forskolin-stimulated cAMP in granule cells by 30–50% in the absence or presence of inhibitors of ionotropic acidic amino acid receptors, as well as 2-amino-4-phosphonobutyrate. No additivity in the inhibition of cAMP was found when 300 μ M NAAG and trans -1-amino-1, 3-cyclopentanedicarboxylic acid were coapplied. The β-analogue of NAAG failed to reduce cAMP levels. Similar effects of NAAG and glutamate were obtained under conditions of inhibition of phosphodiesterase activity and were prevented by pretreatment of the cells with pertussis toxin. These data are consistent with the activation by NAAG of a metabotropic acidic amino acid receptor coupled to an inhibitory G protein. In contrast, the metabotropic acidic amino acid receptor coupled to phosphoinositol turnover in these cells was not activated by NAAG. Granule cells in culture expressed very low levels of extracellular peptidase activity against NAAG, converting to glutamate <0.1% of the 10 μ M through 1 m M NAAG applied to these cells during 15-min in vitro assays.