Molecular evidence does not support the current division of Orthotrichum subgenus Gymnoporus

Eight Orthotrichum species of subgenus Gymnoporus were compared using the internally transcribed spacer regions-1 and -2 and the chloroplast trnH-psbA region. A phylogenetic analysis did not reflect the current division of this subgenus into sections Affinia and Leiocarpa. The investigated sequences revealed a close relationship between O. striatum, a typical species of section Leiocarpa and O. affine, a typical species of section Affinia. An easily distinguishable group was formed by samples of the dioecious O. lyellii, placed into section Leiocarpa. A large number of fixed differences between O. lyellii and other species of subgenus Gymnoporus raises doubts concerning its position within this subgenus. No marker mutations enabling to differentiate O. fastigiatum from O. affine have been found. In absence of such mutations for O. affine and O. striatum, the status of O. fastigiatum cannot be determined unambiguously.     

Is feeding on mosses by groundhoppers in the genus <Emphasis Type="Italic">Tetrix</Emphasis> (Insecta: Orthoptera) opportunistic or selective?

Groundhoppers are considered to be detrito-bryophagous, and moss phyllodes represent a main food consumed by all studied species. We studied the food biology of two groundhoppers: the stenotopic habitat specialist Tetrix ceperoi (Bolivar, 1887) and the eurytopic T. tenuicornis (Sahlberg, 1893). These species occurred syntopically in an abandoned sand pit in the Czech Republic. The dietary preferences of the two species were very similar, with detritus being the dominant component, followed by mosses and other kinds of organic matter. The eurytopic T. tenuicornis consumed a greater diversity of mosses than the stenotopic T. ceperoi. The most frequently consumed mosses were the dominant species at the locality (Barbula spp., Bryum caespiticium, and Ceratodon purpureus), but some species-specific preferences were evident in the consumption of other moss species. To determine whether these groundhoppers mainly consumed mosses to obtain the water in their tissues, we compared the food composition at two sites that differed considerably in water availability. A selective consumption of mosses according to the water availability at the sites was evident. At the dry site, groundhoppers frequently consumed mosses that are simultaneously more tolerant to desiccation and nutritionally richer (species in the genera Barbula and Ceratodon) than the other mosses. Our results indicate that although groundhoppers generally consume those mosses that are most available, they do show some preference for mosses according to their nutritional quality and according to their ability to retain water under dry conditions.     

The connections of Wnt pathway components with cell cycle and centrosome: side effects or a hidden logic?

Wnt signaling cascade has developed together with multicellularity to orchestrate the development and homeostasis of complex structures. Wnt pathway components – such as β-catenin, Dishevelled (DVL), Lrp6, and Axin-- are often dedicated proteins that emerged in evolution together with the Wnt signaling cascade and are believed to function primarily in the Wnt cascade. It is interesting to see that in recent literature many of these proteins are connected with cellular functions that are more ancient and not limited to multicellular organisms – such as cell cycle regulation, centrosome biology, or cell division. In this review, we summarize the recent literature describing this crosstalk. Specifically, we attempt to find the answers to the following questions: Is the response to Wnt ligands regulated by the cell cycle? Is the centrosome and/or cilium required to activate the Wnt pathway? How do Wnt pathway components regulate the centrosomal cycle and cilia formation and function? We critically review the evidence that describes how these connections are regulated and how they help to integrate cell-to-cell communication with the cell and the centrosomal cycle in order to achieve a fine-tuned, physiological response.     

Co-localization of apoptosis-regulating proteins in mouse mammary epithelial HC11 cells exposed to TGF-beta1

TGF-beta1 is an apoptogenic agent for mammary epithelial cells (MEC). The molecular mechanism of the TGF-beta1-induced apoptosis remains, however, obscure. In the present study we used laser scanning cytometry, confocal microscopy and immunogold electron microscopy to analyze the expression, aggregation and co-localization of caspase-8, Bid, Bax and VDAC-1. These proteins are regarded as the most important factors involved in the regulatory phase of TGF-beta1-induced apoptosis. Apoptosis in HC11 mouse MEC manifested with a simultaneous increase in expression and subcellular aggregation of caspase-8, Bid, Bax and VDAC-1. Confocal microscopy revealed a strong pattern of co-localization of examined proteins during both early and late apoptosis. Experiments with double- and triple-staining immunoelectron microscopy showed a co-localization of Bax/Bid, caspase-8/Bax/Bid, and Bax/VDAC-1, on the membranes of mitochondria, Golgi apparatus, rough endoplasmic reticulum, nuclear envelope, nuclear pore, and within the nucleus. In conclusion, the observed pattern of changes in aggregation and subcellular localization of caspase-8, Bid, Bax and VDAC-1 during TGF-beta1-induced apoptosis in HC11 mouse MEC suggests an interaction between these proteins and formation of multimeric complexes on organellar membranes, thus controlling their permeability for intracellular mediators of apoptosis.     

Photosynthesis in dynamic light: systems biology of unconventional chlorophyll fluorescence transients in Synechocystis sp. PCC 6803

Photosynthetic organisms live in a dynamic environment where light typically fluctuates around a mean level that is slowly drifting during the solar day. We show that the far-from-equilibrium photosynthesis occurring in a rapidly fluctuating light differs vastly from the stationary-flux photosynthesis attained in a constant or slowly drifting light. Photosynthetic organisms in a static or slowly drifting light can be characterized by a steady-state quantum yield of chlorophyll fluorescence emission F′ that is changing linearly with small and slow variations of the incident irradiance I+ΔI(t): F′(I+ΔI(t))≈ F_mean^′(dF)/(dI)·ΔI(t). In Synechocystis sp. PCC 6803, the linear approximation holds for an extended interval covering largely the static irradiance range experienced by the cyanobacteria in nature. The photosynthetic dynamism and, consequently, the dynamism of the chlorophyll fluorescence emission change dramatically when exposing the organism to a fluctuating irradiance. Harmonically-modulated irradiance I+ΔI · sin(2πt/T), T ≈ 1–25 s induces perpetual, far-from-equilibrium forced oscillations that are strongly non-linear, exhibiting significant hysteresis with multiple fluorescence levels corresponding to a single instantaneous level of the incident irradiance. We propose that, in nature, the far-from-equilibrium dynamic phenomena represent a significant correction to the steady-state photosynthetic activity that is typically investigated in laboratory. Analysis of the forced oscillations by the tools of systems biology suggests that the dynamism of photosynthesis observed in fluctuating light can be explained by a delayed action of regulatory agents.     

Influence of 1,2-alkanediols on the structure of their intercalates with strontium phenylphosphonate solved by molecular simulation and experimental methods

Strontium phenylphosphonate intercalates with 1,2-diols (from 1,2-ethanediol to 1,2-hexanediol) were synthesized and characterized by X-ray diffraction, thermogravimetry, chemical analysis, and molecular simulation methods. Prepared samples exhibit a very good stability at ambient conditions. Structural arrangement calculated by simulation methods suggested formation of cavities surrounded by six benzene rings. Each cavity contained one molecule of diol and one molecule of water for the 1,2-ethanediol to 1,2-butanediol intercalates. In the case of 1,2-pentanediol two types of cavities alternated: one with diol molecules and another one with two water molecules. In the 1,2-hexanediol intercalate the benzene rings created two types of cavities containing one or two diol molecules, respectively, and this conformational variability led to a more disordered arrangement with respect to the models with shorter alkyl chains. Coordination of the oxygen atoms of the diols to the strontium atoms of the host follows the same pattern for all 1,2-diol intercalates except the 1,2-hexanediol intercalate, where these oxygen atoms can be mutually exchanged at their positions. The calculated basal spacings and structural models are in good agreement with experimental basal spacings obtained from X-ray powder diffraction and with other experimental results.     

The effect of positional error on fine scale species distribution models increases for specialist species

Species occurrences inherently include positional error. Such error can be problematic for species distribution models (SDMs), especially those based on fine-resolution environmental data. It has been suggested that there could be a link between the influence of positional error and the width of the species ecological niche. Although positional errors in species occurrence data may imply serious limitations, especially for modelling species with narrow ecological niche, it has never been thoroughly explored. We used a virtual species approach to assess the effects of the positional error on fine-scale SDMs for species with environmental niches of different widths. We simulated three virtual species with varying niche breadth, from specialist to generalist. The true distribution of these virtual species was then altered by introducing different levels of positional error (from 5 to 500 m). We built generalized linear models and MaxEnt models using the distribution of the three virtual species (unaltered and altered) and a combination of environmental data at 5 m resolution. The models’ performance and niche overlap were compared to assess the effect of positional error with varying niche breadth in the geographical and environmental space. The positional error negatively impacted performance and niche overlap metrics. The amplitude of the influence of positional error depended on the species niche, with models for specialist species being more affected than those for generalist species. The positional error had the same effect on both modelling techniques. Finally, increasing sample size did not mitigate the negative influence of positional error. We showed that fine-scale SDMs are considerably affected by positional error, even when such error is low. Therefore, where new surveys are undertaken, we recommend paying attention to data collection techniques to minimize the positional error in occurrence data and thus to avoid its negative effect on SDMs, especially when studying specialist species.