Identification of important residues in diketoreductase from Acinetobacter baylyi by molecular modeling and site-directed mutagenesis

Diketoreductase (DKR) from Acinetobacter baylyi exhibits a unique property of double reduction of a β, δ-diketo ester with excellent stereoselectivity, which can serve as an efficient biocatalyst for the preparation of an important chiral intermediate for cholesterol lowering statin drugs. Taken the advantage of high homology between DKR and human heart 3-hydroxyacyl-CoA dehydrogenase (HAD), a molecular model was created to compare the tertiary structures of DKR and HAD. In addition to the possible participation of His-143 in the enzyme catalysis by pH profile, three key amino acid residues, Ser-122, His-143 and Glu-155, were identified and mutated to explore the possibility of involving in the catalytic process. The catalytic activities for mutants S122A/C, H143A/K and E155Q were below detectable level, while their binding affinities to the diketo ester substrate and cofactor NADH did not change obviously. The experimental results were further supported by molecular docking, suggesting that Ser-122 and His-143 were essential for the proton transfer to the carbonyl functional groups of the substrate. Moreover, Glu-155 was crucial for maintaining the proper orientation and protonation of the imidazole ring of His-143 for efficient catalysis.     

Biocontrol of Rhizoctonia solani damping-off disease in cucumber with Bacillus pumilus SQR-N43

Biological control is an efficient and environmentally friendly way to prevent damping-off disease. Micrographs were used to investigate the ability of Bacillus pumilus (B. pumilus) SQR-N43 to control Rhizoctonia solani (R. solani) Q1 in cucumbers. The root colonization ability of B. pumilus SQR-N43 was analyzed in vivo with a green fluorescent protein (GFP) tag. A pot experiment was performed to assess the in vivo disease-control efficiency of B. pumilus SQR-N43 and its bio-organic fertilizer. Results indicate that B. pumilus SQR-N43 induced hyphal deformation, enlargement of cytoplasmic vacuoles and cytoplasmic leakage in R. solani Q1 mycelia. A biofilm on the root surface was formed when the roots were inoculated with 10(7)-10(8)cells g(-1) of soil of GFP-tagged B. pumilus SQR-N43. In the pot experiment, the biocontrol reduced the concentration of R. solani. In contrast to applications of only B. pumilus SQR-N43 (N treatment), which produced control efficiencies of 23%, control efficiencies of 68% were obtained with applications of a fermented organic fertilizer inoculated with B. pumilus SQR-N43 (BIO treatment). After twenty days of incubation, significant differences in the number of CFUs and the percentage of spores of B. pumilus SQR-N43 were recorded between the N treatment (2.20×10(7)CFU g(-1) of soil and 79%, respectively) and the BIO treatment (1.67×10(8)CFU g(-1) of soil and 52%, respectively). The results indicate that B. pumilus SQR-N43 is a potent antagonist against R. solani Q1. The BIO treatment was more effective than the N treatment because it stabilized the population and increased the active form of the antagonist.     

Cardiac overexpression of metallothionein rescues cold exposure-induced myocardial contractile dysfunction through attenuation of cardiac fibrosis despite cardiomyocyte mechanical anomalies

Cold exposure is associated with an increased prevalence of cardiovascular disease although the mechanism is unknown. Metallothionein, a heavy-metal-scavenging antioxidant, protects against cardiac anomalies. This study was designed to examine the impact of metallothionein on cold exposure-induced myocardial dysfunction, intracellular Ca(2+) derangement, fibrosis, endoplasmic reticulum (ER) stress, and apoptosis. Echocardiography, cardiomyocyte function, and Masson trichrome staining were evaluated in Friend virus B (FVB) and cardiac-specific metallothionein transgenic mice after cold exposure (3 months, 4 °C). Cold exposure increased plasma levels of norepinephrine, endothelin-1, and TGF-β; reduced plasma NO levels and cardiac antioxidant capacity; enlarged ventricular end-systolic diameter; compromised fractional shortening; promoted reactive oxygen species (ROS) production and apoptosis; and suppressed the ER stress markers Bip, calregulin, and phospho-eIF2α, accompanied by cardiac fibrosis and elevated levels of matrix metalloproteinases and Smad-2/3 in FVB mice. Cold exposure-induced echocardiographic, histological, ER stress, ROS, apoptotic, and fibrotic signaling changes (but not plasma markers) were greatly improved by metallothionein. In vitro metallothionein induction by zinc chloride ablated H(2)O(2)- but not TGF-β-induced cell proliferation in fibroblasts. In summary, our data suggest that metallothionein protects against cold exposure-induced cardiac anomalies possibly through attenuation of myocardial fibrosis.     

RT-SHIV rt基因单拷贝PCR扩增方法的建立及初步应用

目的建立RT-SHIV病毒全长rt基因单拷贝PCR扩增方法,用于HIV-1 rt基因体内遗传与变异研究。方法 Oligo软件设计RT-SHIV rt基因特异性扩增引物,梯度稀释方法进行特异性和灵敏度筛选,进而优化退火温度和PCR反应最佳循环数等条件,建立rt基因PCR扩增方法;在此基础上将模板进行有限稀释,摸索rt基因单拷贝PCR扩增条件;使用该方法扩增感染猴体内RT-SHIV病毒rt基因,BioEdit软件进行基因序列分析。结果筛选得到一组巢式PCR引物,成功建立了RT-SHIV rt基因PCR扩增方法;当模板浓度为100 copies/μL时,扩增产物为单拷贝序列;测序结果显示RT-SHIV感染猴d266和d294血浆样本分别存在1处和6处氨基酸突变。结论本研究建立的全长rt基因单拷贝PCR扩增方法特异性好、灵敏度高、重复性强,可以应用于各类RT-SHIV病毒的全长rt基因分析。     

羊流产嗜衣原体ompA基因的克隆与表达

目的:克隆羊流产嗜衣原体ompA基因,获得原核表达ompA蛋白。方法:以前期构建的质粒pMD-18T-ompA为模板,扩增出无信号肽无终止子ompA基因1 101bp条带,亚克隆至原核表达载体pet-32a,转化大肠杆菌BL21(DE3),重组质粒稳定性测试合格后经1mmol/L IPTG诱导表达4h,并采用SDS-PAGE和Western-blot检测重组蛋白的表达结果。结果:本试验成功获得60kDa重组ompA蛋白,该重组蛋白主要以包涵体的形式存在,免疫印迹显示可与山羊流产嗜衣原体阳性血清反应,具有免疫原性。结论:成功建立ompA基因的原核表达方法,为后续ompA蛋白的功能研究奠定基础。     

HPLC在雷公藤上的应用研究进展

近年来高效液相色谱测定技术(HPLC)在雷公藤种源筛选,有效成分分析,制剂质量控制方面的应用,体现了该项技术的优越性,也表明雷公藤产业要发展,必须依靠先进、可靠的检测分析技术从源头到研发、生产再到临床应用等进行系统监测,以保障雷公藤的用药安全。     

广东省入库河口N2O分布和通量的时空变化

本研究于2011年7月(丰水期)和12月(枯水期)分别对广东省13个水库的入库河口进行调查,使用吹扫捕集-气相色谱法测定了水中N2O的浓度并用Liss&Merlivat公式估算出入库河口向大气释放N2O的水-气交换通量。结果表明,河口丰水期N2O溶存浓度范围为15.37～175.22 nmol/L,平均值为(73.77±43.58)nmol/L;N2O水-气交换通量范围为0.26～5.40μmol/(m2.d),平均值是(2.53±1.94)μmol/(m2.d)。河口枯水期N2O溶存浓度范围为44.26～366.11 nmol/L,平均值是(126.61±102.74)nmol/L;N2O水-气交换通量范围是0.86～21.88μmol/(m2.d),平均值是(7.50±6.65)μmol/(m2.d)。河口丰水期N2O溶存浓度和水-气交换通量明显低于枯水期。与其他研究相比,本研究区N2O溶存浓度和水-气交换通量偏低。     

阔口尖毛虫皮层纤毛器微管在不同生理条件下的分化

应用激光扫描共聚焦显微术,显示腹毛类纤毛虫阔口尖毛虫(Oxytricha platystoma)无性生殖过程中,新的口围带、波动膜、额腹横棘毛、左右缘棘毛微管先后分化,老纤毛器微管去分化,细胞分裂产生各含一套纤毛器微管的前、后两仔虫;生理改组过程中,口围带、波动膜、额腹横棘毛、左右缘棘毛微管发生去分化和再分化,细胞皮层微管胞器更新形成含一套纤毛器微管的新细胞。结果表明阔口尖毛虫在无性生殖和生理改组这两种不同的生理条件下,其纤毛器微管结构的形成或更新可能具有相同的细胞调控机制,形态发生中老纤毛器结构可能对新结构的发生和发育具有诱导定位和物质贡献的作用。     

西达本胺对人前列腺癌DU145及PC3细胞凋亡的影响

目的:研究西达本胺对前列腺癌DU145、PC3细胞生长抑制及凋亡调控的作用。方法:设置西达本胺浓度分别为4、8、16、32和64μmol/L的5个处理组和对照组(未加西达本胺),分别处理DU145、PC3细胞不同时间,采用MTT法检测细胞的增殖抑制情况,用倒置显微镜观察细胞形态,用流式细胞仪进行细胞凋亡分析,用免疫印迹法检测细胞内Bax、Bcl-2、caspase-3、caspase-9的表达水平。结果:与对照组比较,西达本胺处理组可使细胞明显变圆、体积缩小、脱壁细胞增多;MTT法检测显示,随着西达本胺浓度的增加和作用时间的延长,对DU145、PC3细胞的增殖抑制作用增强,并呈时间、剂量正相关(P<0.01);流式细胞术显示,对照组和16、64μmol/L西达本胺组细胞凋亡率分别为42.24%、50.23%;随着西达本胺浓度的增加,Bcl-2的表达呈下调趋势,Bax、caspase-3、caspase-9的表达呈上调趋势,呈剂量正相关。结论:西达本胺对前列腺癌DU145、PC3细胞生长具有明显的抑制作用,作用机制可能与Bax、Bcl-2、caspase-3及caspase-9凋亡信号通路有关。