一类生化反应模型的定性分析

本文讨论了Babloyantz-Hiernaux生化反应模型及其特殊情况下的Glerer-Meinhardt数学模型,得到了前者的平衡位置的局部稳定位和后者的极限环的存在性即振荡反应的存在性以及其平衡位置的大范围稳定性.     

Programming living sensors for environment,health and biomanufacturing

Synthetic biology offers new tools and capabilities of engineering cells with desired functions for example as new biosensing platforms leveraging engineered microbes. In the last two decades, bacterial cells have been programmed to sense and respond to various input cues for versatile purposes including environmental monitoring, disease diagnosis and adaptive biomanufacturing. Despite demonstrated proof-of-concept success in the laboratory, the real-world applications of microbial sensors have been restricted due to certain technical and societal limitations. Yet, most limitations can be addressed by new technological developments in synthetic biology such as circuit design, biocontainment and machine learning. Here, we summarize the latest advances in synthetic biology and discuss how they could accelerate the development, enhance the performance and address the present limitations of microbial sensors to facilitate their use in the field. We view that programmable living sensors are promising sensing platforms to achieve sustainable, affordable and easy-to-use on-site detection in diverse settings.     

Environmental factors and hygiene behaviors associated with facial cleanliness and trachoma in Kongwa,Tanzania

BackgroundHaving a clean face is protective against trachoma. In the past, long distances to water were associated with unclean faces and increased trachoma. Other environmental factors have not been extensively explored. We need improved clarity on the environmental factors associated with facial cleanliness and trachoma prevalence, especially when the disease burden is low.Methodology/Principle findingsA cross-sectional survey focusing on household environments was conducted in all 92 villages in Kongwa, Tanzania, in a random selection of 1798 households. Children aged 0–5 years in these households were examined for facial cleanliness. In each of the 50 randomly-selected villages, 50 children aged 1–9 years were randomly selected and examined for trachoma. In a multivariate model adjusting for child age, we found that children were more likely to have clean faces if the house had a clean yard (OR 1.62, 95% CI 1.37–1.91), an improved latrine (OR 1.11, 95% CI 1.01–1.22), and greater water storage capacity (OR 1.02, 95% CI 1.00–1.04), and if there were clothes washed and drying around the house (OR 1.30, 95% CI 1.09–1.54). However, measures of crowding, wealth, time spent on obtaining water, or the availability of piped water was not associated with clean faces. Using a cleanliness index (clean yard, improved latrine, washing clothes, ≥1 child in the household having a clean face), the community prevalence of trachoma decreased with an increase in the average value of the index (OR 2.28, 95% CI 1.17–4.80).Conclusions/SignificanceAccess to water is no longer a significant limiting factor in children’s facial cleanliness in Kongwa. Instead, water storage capacity and the way that water is utilized are more important in facial cleanliness. A household cleanliness index with a holistic measure of household environment is associated with reduced community prevalence of trachoma.     

Identification and characterization of the rhizosphere phosphate-solubilizing bacterium <Emphasis Type="Italic">Pseudomonas frederiksbergensis</Emphasis> JW-SD2 and its plant growth-promoting effects on poplar seedlings

The rhizospheric bacterium JW-SD2 was identified as Pseudomonas frederiksbergensis based on phenotypic features, the Biolog Identification System and 16S rRNA sequence analysis. The phosphate-solubilizing activity, acidification in culture media, growth rate and organic acid secretion of JW-SD2 were investigated during 192 h of cultivation. The phosphate solubilized by JW-SD2 reached 7.75 mM. The decrease of pH and increase of titratable acidity were closely correlated (Pearson’s r?=??0.953 and 0.969, respectively) with the phosphate-solubilizing activity. High concentrations of gluconic, 2-ketogluconic, pyruvic, maleic and malic acids were detected before 96 h of culture, when the strain displayed a high level of phosphate-solubilizing activity, indicating that these organic acids were efficient components in phosphate solubilization. However, acetic acid did not affect phosphate solubilization as shown by a remarkable increase at 144 h of culture when the phosphate-solubilizing activity decreased. The phosphate-solubilizing ability of JW-SD2 was significantly (P?<?0.01) affected by environmental factors. Over a broad ranges of temperature (20?35 °C), pH (4?9), salinity (0?3.0 %), and volume of medium (1/5?3/5 of flask volume), the phosphate solubilized by JW-SD2 remained above 4.00 mM, demonstrating good potential in adapting to a changing environment. The inoculation experiments indicated that JW-SD2 could significantly (P?<?0.05) promote growth of poplar (Populus euramericana cv. NL-895) in both sterilized and non-sterilized soils. The effects of plant growth promotion were greater in non-sterilized than in sterilized soil. During the 150 days of the trial, the effects of plant growth promotion by JW-SD2 first increased then decreased over time, suggesting that, in field applications, the periodic supplementation of the strain into the rhizosphere should be considered.     

灵昆岛围垦区内外滩涂大型底栖动物生物多样性

2006年2月至2006年11月在灵昆岛东滩湿地选择1997年围垦潮沟滩涂以及围垦区外的自然滩涂作为样地,开展了自然滩涂与围垦潮沟滩涂大型底栖动物群落生物多样性比较的调查研究.共发现大型底栖动物36种,隶属7门8纲22科,这些物种中软体动物、节肢动物和环节动物共占物种总数的83.33%.其中在围垦区内的4个样点共发现大型底栖动物27种,在自然滩涂上的4个样点共发现大型底栖动物32种.通过对定量取样获得的各群落大型底栖动物密度数据进行计算,得到了各种大型底栖动物的生态位宽度和围垦区内外不同生境中大型底栖动物群落生物多样性指数(Shannon-Weiner指数 H'、Pielou指数 J、Simpson指数 D),结果显示围垦滩涂潮沟上的光滩和边滩以及自然滩涂上的高潮带和中潮带滩涂的Shannon-Weiner多样性指数 H'较高,Simpson优势度指数D则相对较低,表明了这些位点的大型底栖动物的多样性程度较高,而长满互花米草(Spartina alterniflora)位点的Shannon-Weiner多样性指数 H'和Pielou均匀度指数 J都要小于受潮水作用相似的邻近滩涂,但Simpson优势度指数D却相对较高,这表明互花米草入侵已改变了原来的大型底栖动物群落结构.运用相似度指数Jc、成对t检验以及聚类和排序等多种统计学方法对围垦滩涂潮沟和自然滩涂上的各个位点进行了群落相似性分析,结果表明潮位是影响自然滩涂上大型底栖动物分布的一个重要因素,不同潮位之间的大型底栖动物群落差异比较明显.相对而言,围垦区内各生境之间的大型底栖动物群落分化程度较低,即围垦导致潮位因素对大型底栖动物的分布的影响降低.