Biologically relevant effects of mRNA amplification on gene expression profiles

Background  

Gene expression microarray technology permits the analysis of global gene expression profiles. The amount of sample needed limits the use of small excision biopsies and/or needle biopsies from human or animal tissues. Linear amplification techniques have been developed to increase the amount of sample derived cDNA. These amplified samples can be hybridised on microarrays. However, little information is available whether microarrays based on amplified and unamplified material yield comparable results.     

内蒙古魏家窝铺遗址陶器内淀粉粒反映的古人类食谱及相关问题

魏家窝铺遗址位于内蒙古赤峰市红山区文钟镇魏家窝铺村,是一处大型的红山文化中期环壕聚落遗址。在2009-2011年发掘出土的陶器中,许多平底器类标本内壁表面都发现有细腻的黑色灰烬,我们对这些灰烬和几件不含灰烬的陶器标本进行了植物残留物提取和鉴定,从六份样品中观测到了植物淀粉粒,这些淀粉粒可根据形态分为四种类型,分别代表了禾本科、植物地下储藏器官、疑似坚果的植物种类和未知种类。大量的禾本科淀粉粒在形态上与粟类(小米)淀粉粒极为相似,加之遗址中出土的大量炭化粟,我们推测,这些陶罐中的黑色灰烬为内部盛装的粟炭化分解所致,这些陶器正是红山文化中的食物储藏器。存在的其他类型淀粉粒表明,尽管魏家窝铺遗址出土的植物遗存已显示了较为确凿的农业经济,但采集经济也仍占有重要地位。     

Lectin histochemical identification of carbohydrate moieties in opossum chemosensory systems during development,with special emphasis on VVA-identified subdivisions in the accessory olfactory bulb

The changes occurring in the testicular lamina propria (LP) of the seasonal breeder Octodon degus were analyzed. Four groups of animals were studied using electron microscopic procedures. The animals in group I were reproductively active, whereas those in groups II, III, and IV were in periods of recrudescence, regression, and resting, respectively. These changes, observed in animals maintained under laboratory lighting conditions, resembled those known to be elicited in feral populations by natural photoperiods. Testicular changes in each group were monitored by calculating the gonadosomatic and spermatogenetic indexes, and by obtaining averages of the diameter of the seminiferous tubules and the height of the seminiferous epithelium. The LP of group I animals consisted of a basal membrane formed by two to four lamellae, inner and outer acellular layers containing moderate numbers of collagenous fibrils, and single or double layers of smoothly contoured myoid cells encircled by a discontinuous lymphatic epithelium. The LP of group IV animals differed considerably from the LP of group I animals: The inner acellular layer was enlarged, and the basal membrane appeared composed of a variable number of lamellae with numerous folds and indentations. Myoid cells were very irregular in contour and enveloped by a well-developed surface coating. The LPs of animals in groups II and III possessed relatively similar characteristics, which appeared to be intermediate between those of groups I and IV. The significance of these morphological changes in the LP are discussed in relation to testicular changes induced by photoperiod and other normal or pathological processes. © 1995 Wiley-Liss, Inc.     

Amblyomma sculptum: genetic diversity and rickettsias in the Brazilian Cerrado biome

Amblyomma sculptum (Ixodida: Ixodidae) Berlese, 1888 is the most important tick vector in Brazil, transmitting the bioagent of the most severe form of spotted fever (SF) in part of the Cerrado (in the states of Minas Gerais and São Paulo). In another part of the Cerrado (Central‐West region of Brazil), a milder form of SF has been recorded. However, neither the rickettsia nor the vector involved have been characterized. The aim of the current study was to analyse genetic variation and the presence of rickettsia in A. sculptum in Cerrado, from silent areas and with the milder form of SF. Samples were subjected to DNA extraction, amplification and sequencing of 12S rDNA, cytochrome oxidase subunit II and D‐loop mitochondrial genes (for tick population analyses), and gltA, htrA, ompA and gene D (sca4) genes for rickettsia researches. Exclusive haplotypes with low frequencies, high haplotype diversity and low nucleotide diversity, star‐shaped networks and significant results in neutrality tests indicate A. sculptum population expansions in some areas. Rickettsia amblyommatis, Candidatus Rickettsia andeanae and Rickettsia felis were detected. The A. sculptum diversity is not geographically, or biome delimited, pointing to a different potential in vector capacity, possibly associated with differing tick genetic profiles.     

Characterization of sodium transport in gustatory epithelia from the hamster and rat

The transduction of sodium salts occurs through a variety of mechanisms, including sodium influx through amiloride-sensitive sodium channels, anion-dependent sodium movement through intercellular junctions and unidentified amiloride-insensitive mechanisms. Characterizations of sodium transport in lingual epithelium mounted in Ussing chambers have focused almost exclusively on epithelia containing only fungiform taste buds. In the present study we have investigated sodium transport by measuring NaCl-induced short-circuit current from lingual epithelia containing fungiform, foliate, vallate and palatine taste buds in the hamster and the rat. All areas show measurable sodium transport, yet significant differences were noted between the epithelia from the rat and the hamster and among the different epithelia within a single species in terms of current density, transepithelial resistance and mucosal amiloride sensitivity. In general, epithelia from the anterior tongue were of a lower resistance and transported sodium more effectively than from the posterior tongue. Moreover, fungiform- and vallate-containing epithelia in the rat had a greater current density than did the corresponding tissues in the hamster. Amiloride sensitivity also differed between the rat and the hamster. In the hamster all gustatory areas showed some amiloride sensitivity, while in the rat the vallate-containing epithelia were devoid of amiloride- sensitive sodium transport. The results are consistent with the interpretation that all chemosensitive areas may participate in the detection of salts but the degree of salt transport and the mechanism of transport is variable among different lingual epithelia and different species.      

Noncontact dipole effects on channel permeation. III. Anomalous proton conductance effects in gramicidin

Proton transport on water wires, of interest for many problems in membrane biology, is analyzed in side-chain analogs of gramicidin A channels. In symmetrical 0.1 N HCl solutions, fluorination of channel Trp(11), Trp-(13), or Trp(15) side chains is found to inhibit proton transport, and replacement of one or more Trps with Phe enhances proton transport, the opposite of the effects on K(+) transport in lecithin bilayers. The current-voltage relations are superlinear, indicating that some membrane field-dependent process is rate limiting. The interfacial dipole effects are usually assumed to affect the rate of cation translocation across the channel. For proton conductance, however, water reorientation after proton translocation is anticipated to be rate limiting. We propose that the findings reported here are most readily interpreted as the result of dipole-dipole interactions between channel waters and polar side chains or lipid headgroups. In particular, if reorientation of the water column begins with the water nearest the channel exit, this hypothesis explains the negative impact of fluorination and the positive impact of headgroup dipole on proton conductance.