Prospects for estimating nucleotide divergence with RAPDs

The technique of random amplification of polymorphic DNA (RAPD), which is simply polymerase chain reaction (PCR) amplification of genomic DNA by a single short oligonucleotide primer, produces complex patterns of anonymous polymorphic DNA fragments. The information provided by these banding patterns has proved to be of great utility for mapping and for verification of identity of bacterial strains. Here we consider whether the degree of similarity of the banding patterns can be used to estimate nucleotide diversity and nucleotide divergence. With haploid data, fragments generated by RAPD-PCR can be treated in a fashion very similar to that for restriction-fragment data. Amplification of diploid samples, on the other hand, requires consideration of the fact that presence of a band is dominant to absence of the band. After describing a method for estimating nucleotide divergence on the basis of diploid samples, we summarize the restrictions and criteria that must be met when RAPD data are used for estimating population genetic parameters.      

The effects of melanocortin agonists and antagonists on leptin-induced fever in rats

1. Over three experiments, separate groups of adult male Sprague–Dawley rats received intracerebroventricular (ICV) injections of either vehicle, recombinant rat leptin (1 μg), or leptin (4 μg), then two ICV injections, 30 min apart of vehicle/vehicle, leptin (4 μg)/vehicle, vehicle/α-MSH (300 ng), or leptin/α-MSH, and then vehicle/vehicle, leptin (4 μg)/vehicle, vehicle/ SHU-9119 (200 ng; a MC 3/4 receptor antagonist), or leptin/SHU-9119. Core temperatures (T_c), food intake and body weights were monitored.

2. Four microgram leptin resulted in the induction of fever, an effect blocked by injection of α-MSH. Antagonism of MC 3/4 receptors with SHU-9119 did not augment leptin-induced fever, but did block the inhibitory actions of leptin on food intake.

3. These data demonstrate the inhibitory effects of exogenous α-MSH on leptin-induced fever, but suggest that endogenous melanocortin action at MC 3/4 receptors does not tonically inhibit febrigenesis caused by leptin administration.

Genotypic Heterogeneity of Streptococcus oralis and Distinct Aciduric Subpopulations in Human Dental Plaque

The genotypic heterogeneity of Streptococcus oralis isolated from the oral cavity was investigated using repetitive extragenic palindromic PCR. Unrelated subjects harbored unique genotypes, with numerous genotypes being isolated from an individual. S. oralis is the predominant aciduric bacterium isolated from noncarious tooth sites. Genotypic comparison of the aciduric populations isolated at pH 5.2 with those isolated from mitis-salivarius agar (MSA) (pH 7.0) indicated that the aciduric populations were genotypically distinct in the majority of subjects (χ² = 13.09; P = 0.0031). Neither the aciduric nor the MSA-isolated strains were stable, with no strains isolated at baseline being isolated 4 or 12 weeks later in the majority of subjects. The basis of this instability is unknown but is similar to that reported for Streptococcus mitis. Examination of S. oralis strains isolated from cohabiting couples demonstrated that in three of five couples, genotypically identical strains were isolated from both partners and this was confirmed by using Salmonella enteritidis repetitive element PCR and enterobacterial PCR typing. These data provide further evidence of the physiological and genotypic heterogeneity of non-mutans streptococci. The demonstration of distinct aciduric populations of S. oralis implies that the role of these and other non-mutans streptococci in the caries process requires reevaluation.     

Use of chromomycin A3 staining in bovine sperm cells for detection of protamine deficiency

Sperm chromatin integrity is essential for accurate transmission of male genetic information, and normal sperm chromatin structure is important for fertilization. Protamine is a nuclear protein that plays a key role in sperm DNA integrity, because it is responsible for sperm DNA stability and packing until the paternal genome is delivered into the oocyte during fertilization. Our aim was to investigate protamine deficiency in sperm cells of Bos indicus bulls (Nelore) using chromomycin A₃ (CMA₃) staining. Frozen semen from 14 bulls were thawed, then fixed in Carnoy's solution. Smears were prepared and analyzed by microscopy. As a positive control of CMA₃ staining, sperm from one bull was subjected to deprotamination of nuclei. The percentage of CMA₃-positive bovine sperm did not vary among batches. Only two bulls showed a higher percentage of CMA₃-positive sperm cells compared to the others. CMA₃ is a simple and useful tool for detecting sperm protamine deficiency in bulls.     

Glucocorticoid-mediated selective reduction of functioning collagen messenger ribonucleic acid

Polysomes were isolated from both lung and dermis of neonatal rats and the poly(A) RNA therein was isolated by oligo(dT)-cellulose chromatography. The RNA fractions were then translated in the nuclease-treated reticulocyte lysate in the presence of radioactive proline. Optimal collagen and noncollagen protein synthesis directed by lung poly(A) RNA occurred at 0.7 mm magnesium and 100 mm potassium. The RNA fraction directed the synthesis of both proα₁ and proα₂ chains as determined by polyacrylamide gel electrophoresis. The poly(A) RNA isolated from both lung and dermis polysomes of rats treated with triamcinolone diacetate synthesized significantly less collagen peptides as determined by collagenase digestion as did the RNA isolated from polysomes of nontreated animals. Noncollagen protein synthesis was decreased to a lesser extent than collagen synthesis. Glucocorticoid treatment did not affect the ability of either polysomes in wheat germ extract or polysomal poly(A) RNA in nuclease-treated reticulocyte lysate to synthesize prolyl hydroxylase as determined by immunoprecipitation. These data indicate the glucorticoid-mediated inhibition of collagen polypeptide synthesis does not result from nonspecific effect on total cellular protein synthesis of normal fibroblasts, but a selective reduction of poly some-associated messenger RNA. Furthermore these data provide a molecular basis for selective inhibitory effect of synthetic anti-inflammatory steroids on collagen synthesis.     

A non-invasive approach to determining pine marten abundance and predation

A non-invasive approach was used to investigate variation in pine marten (Martes martes) abundance between the midlands and east of Ireland, and to determine the frequency of occurrence of squirrels and other small mammals in the diet. Remotely plucked hair samples were genotyped to differentiate between individual animals, and real-time polymerase chain reaction (PCR) was used to identify predator and prey DNA in scats. Macro analysis of prey remains was carried out on a sub sample of scats and the results from both methods are compared. Non-invasive techniques were successful in determining the presence and relative abundance of the pine marten at woodland level. As expected, abundance was found to be higher in the core population of the midlands than in the east. Pine martens were found to reach higher numbers per km² of forested habitat in Ireland than their British or European counterparts. Both traditional hard part analysis and molecular dietary analysis of mammalian prey yielded similar results. We provide the first evidence of the European pine marten predating upon the North American grey squirrel (Sciurus carolinensis) in its invasive range. While the grey squirrel was not available as a prey item in any of the midlands sites, it was available in the east, where it featured significantly more frequently in the diet than the native red squirrel. In both the midlands and the east the woodmouse is the most frequently occurring mammal in the diet.