Medical bioremediation of age-related diseases

Catabolic insufficiency in humans leads to the gradual accumulation of a number of pathogenic compounds associated with age-related diseases, including atherosclerosis, Alzheimer's disease, and macular degeneration. Removal of these compounds is a widely researched therapeutic option, but the use of antibodies and endogenous human enzymes has failed to produce effective treatments, and may pose risks to cellular homeostasis. Another alternative is "medical bioremediation," the use of microbial enzymes to augment missing catabolic functions. The microbial genetic diversity in most natural environments provides a resource that can be mined for enzymes capable of degrading just about any energy-rich organic compound. This review discusses targets for biodegradation, the identification of candidate microbial enzymes, and enzyme-delivery methods.     

Integrated photocatalytic-biological reactor for accelerated phenol mineralization

An integrated photocatalytic-biological reactor (IPBR) was developed for accelerated phenol degradation and mineralization. In the IPBR, photodegradation and biodegradation occurred simultaneously, but in two separated zones: a piece of mat-glass plate coated with TiO₂ film and illuminated by UV light was connected by internal circulation to a honeycomb ceramic that was the biofilm carrier for biodegradation. This arrangement was designed to give intimate coupling of photocatalysis and biodegradation. Phenol degradation was investigated by following three protocols: photocatlysis with TiO₂ film under ultraviolet light, but no biofilm (photodegradation); biofilm biodegradation with no UV light (biodegradation); and simultaneous photodegradation and biodegradation (intimately coupled photobiodegradation). Photodegradation alone could partly degrade phenol, but was not able to achieve significant mineralization, even with an HRT of 10 h. Biodegradation alone could completely degrade phenol, but it did not mineralize the COD by more than 74%. Photobiodegradation allowed continuous rapid degradation of phenol, but it also led to more complete mineralization of phenol (up to 92%) than the other protocols. The results demonstrate that intimate coupling was achieved by protecting the biofilm from UV and free-radical inhibition. With phenol as the target compound, the main advantage of intimate coupling in the IPBR was increased mineralization, presumably because photocatalysis made soluble microbial products more rapidly biodegradable.     

Definition, Objectives, and Evaluation of Natural Attenuation

Natural attenuation offers large benefits to owners and managers of contaminated sites, but often raises strong objections from those who live and work near a site and are asked to assume most of the long-term risks. Part of the controversy comes about because published definitions of natural attenuation do not identify a realistic end-point objective, and they also are ambiguous about the naturally occurring processes that can achieve the objective. According to guidance from the U.S. National Research Council (NRC 2000), destruction and strong immobilization are the naturally occurring processes that achieve a realistic objective: containing the contaminant relatively nears its source, thereby minimizing exposure risks. The strategy for obtaining solid evidence that the objective is being achieved requires measurements that establish a cause-and-effect relationship between contaminant loss and a destruction or strong-immobilization reaction. The cause-and-effect relationship is best documented with reaction footprints, which typically are concentration changes in reactants or products of the destruction or immobilization reaction. MTBE presents a contemporary example in which footprint evidence for biodegradation is especially crucial, since aerobic biodegradation of MTBE requires special conditions not present at all sites: a high availability of dissolved oxygen and bacteria expressing particular oxygenase enzymes.     

CONTENTS Volume 13 2002

Volume Contents

CONTENTS Volume 13 2002     

In vitro studies on calcium absorption from the gastrointestinal tract in␣small ruminants

Unidirectional flux rates of Ca²⁺ across gastrointestinal tissues from sheep and goats were measured in vitro by applying the Ussing-chamber technique. Except for the sheep duodenum, mucosal to serosal Ca²⁺ flux rates (J _ms) exceeded respective flux rates in the opposite direction (J _sm) in both species and in all segments of the intestinal tract. This resulted in net Ca²⁺ flux rates␣(J _net = J _ms − J _sm) ranging between −2 and 9 nmol · cm⁻² · h⁻¹ in sheep and between 10 and 15 nmol cm⁻² · h⁻¹ in goats. In sheep, only J _net in jejunum, and in goats, J _netin duodenum and jejunum were significantly different from zero. Using sheep rumen wall epithelia, significant J _net of Ca²⁺ of around 5 nmol · cm⁻² · h⁻¹ could be detected. Since the experiments were carried out in the absence of an electrochemical gradient, significant net Ca²⁺ absorption clearly indicates the presence of active mechanisms for Ca²⁺ transport. Dietary Ca depletion caused increased calcitriol plasma concentrations and induced significant stimulations of net Ca²⁺ absorption in goat rumen. J _net of Ca²⁺ across goat rumen epithelia was significantly reduced by 1 mmol · l ⁻¹ verapamil in the mucosal buffer solution. In conclusion, there is clear evidence for the rumen as a main site for active Ca²⁺ absorption in small ruminants. Stimulation of active Ca²⁺ absorption by increased plasma calcitriol levels and inhibition by mucosal verapamil suggest mechanistic and regulatory similarities to active Ca²⁺ transport as described for the upper small intestines of monogastric species. Accepted: 31 July 1996     

In situ determination of kinetic parameters for biofilms: Isolation and characterization of oligotrophic biofilms

This article develops and utilizes an in situ technique to estimate the Monod half-maximum rate concentration, K(s) and the maximum specific utilization rate constant, k, for biofilms. The technique employs a curve-matching method with kinetic results from several short-term experiments with completely mixed biofilm reactors. Use of the in situ method eliminates the two drawbacks of using conventional suspended-growth measurements to characterize biofilm: possible alteration of cell physiology and a major investment to run the suspended-growth tests. Results with five cultures of biofilm-forming oligotrophs demonstrated the in situ technique and supported the hypothesis that K(s) values were lower for the biofilm oligotrophs than for typical copiotrophs.     

The role of exogenous electron donors for accelerating 2,4,6-trichlorophenol biotransformation and mineralization

2,4,6-Trichlorophenol (TCP) is a biologically recalcitrant compound, but its biodegradation via reductive dechlorination can be accelerated by adding an exogenous electron donor. In this work, acetate and formate were evaluated for their ability to accelerate TCP reductive dechlorination, as well to accelerate mono-oxygenation of TCP’s reduction product, phenol. Acetate and formate accelerated TCP reductive dechlorination, and the impact was proportional to the number of electron equivalents released by oxidation of the donor: 8 e^? equivalents per mol for acetate, compared to 2 e^? eq per mol for formate. The acceleration phenomenon was similar for phenol mono-oxygenation, and this increased the rate of TCP mineralization. Compared to endogenous electron equivalents generated by phenol mineralization, the impact of exogenous electron donor was stronger on a per-equivalent basis.     

A new method to solve a non-steady-state multispecies biofilm model

A transient multispecies model for quantifying microbial space competition in biofilm is derived from existing models, introducing a new approach to biomass detachment modelling. This model includes inert biomass, substrate diffusion and utilization rate within the biofilm and diffusional layers. It predicts the evolution of biofilm thickness, bulk substrate concentration, species distribution and substrate concentration within the biofilm. A zero-dimensional transient model is described. Its steady-state solution is used to set up initial conditions of the one-dimensional model and case computation towards steady-state solution. Some numerical tools have been developed, enabling fast computation on microcomputers. Simulations show the validity of a zero-dimensional model and perturbated systems are also simulated. Simulations with experimental data give acceptable results.     

The specific growth rate of Pseudomonas putida PAW1 influences the conjugal transfer rate of the TOL plasmid.

The kinetics of the conjugal transfer of a TOL plasmid were investigated by using Pseudomonas putida PAW1 as the donor strain and P. aeruginosa PAO 1162 as the recipient strain. Short-term batch mating experiments were performed in a nonselective medium, while the evolution of the different cell types was determined by selective plating techniques. The experimental data were analyzed by using a mass action model that describes plasmid transfer kinetics. This method allowed analysis of the mating experiments by a single intrinsic kinetic parameter for conjugal plasmid transfer. Further results indicated that the specific growth rate of the donor strain antecedent to the mating experiment had a strong impact on the measured intrinsic plasmid transfer rate coefficient, which ranged from 1 x 10(-14) to 5 x 10(-13) ml per cell per min. Preliminary analysis suggested that the transfer rates of the TOL plasmid are large enough to maintain the TOL plasmid in a dense microbial community without selective pressures.