Cloning, mapping and characterization of the human RAB27A gene

Choroideremia (CHM) is an X-linked retinal degenerative disease that results from mutations in Rab Escort Protein-1 (REP1). REP1 acts in the prenylation of Rab GTPases, regulators of intracellular protein trafficking. Rab27a is unique among Rabs in that it is selectively unprenylated in CHM cells, suggesting that the degenerative process in CHM may result from unprenylation and consequent loss-of-function of Rab27a. As a first step towards the analysis of the Rab27a protein in patients, we report here the characterization of the human RAB27A gene. The putative protein encoded by this gene shares 96% identity with the previously cloned rat homologue. The RAB27A gene comprises five coding exons and two non-coding exons, of which one is alternatively used, and spans approximately 65 kb of DNA. There are three alternative poly-A addition sites in the long 3' UTR and also six potential single-nucleotide polymorphisms. The gene is located on chromosome 15q15-21.1, as determined by fluorescent in situ hybridization, and between markers D15S209 and AFM321ZD5 by radiation hybrid mapping.     

First principles calculations of thermodynamics and kinetic parameters and molecular dynamics simulations of acetylcholinesterase reactivators: can mouse data provide new insights into humans?

We have applied a theoretical methodology, previously developed to evaluate the association and kinetic reactivation constants of oximes, comparing theoretical data obtained for human acetylcholinesterase (HsAChE) with in vitro results from Mus musculus AChE (MmAChE) previously reported in the literature. Our results, further checked by additional molecular dynamics simulations steps, showed a good correlation between the theoretical and experimental data, supporting the methodology as appropriate for prediction of thermodynamic and kinetic parameters and corroborated MmAChE as a suitable model for studies with HsAChE.     

Bacteria and protozoa differentially modulate the expression of rab proteins

Phagocytic cells represent an important line of innate defense against microorganisms. Uptake of microorganisms by these cells involves the formation of a phagosome that matures by fusing with endocytic compartments, resulting in killing of the enclosed microbe. Small GTPases of the Rab family are key regulators of vesicular trafficking in the endocytic pathway. Intracellular pathogens can interfere with the function of these proteins in order to subvert host immune responses. However, it is unknown if this subversion can be achieved through the modulation of Rab gene expression. We compared the expression level of 23 distinct Rab GTPases in mouse macrophages after infection with the protozoan Plasmodium berghei, and the bacteria Escherichia coli and Salmonella enterica. We found that P. berghei induces an increase in the expression of a different set of Rab genes than E. coli and S. enterica, which behaved similarly. Strikingly, when one of the Rab proteins whose expression was increased by P. berghei, namely Rab14, was silenced, we observed a significant increase in the phagocytosis of P. berghei, whereas Rab14 overexpression led to a decrease in phagocytosis. This suggests that the parasite might induce the increase of Rab14 expression for its own advantage. Similarly, when Rab9a, whose expression was increased by E. coli and S. enterica, was silenced, we observed an increase in the phagocytosis of both bacterial species, whereas Rab9a overexpression caused a reduction in phagocytosis. This further suggests that the modulation of Rab gene expression could represent a mechanism of immune evasion. Thus, our study analyzes the modulation of Rab gene expression induced by bacteria and protozoa and suggests that this modulation could be necessary for the success of microbial infection.     

Peanut Photosynthesis Under Drought and Re-Watering

The photosynthetic response of three Arachis hypogaea L. cultivars (57-422, 73-30, and GC 8-35) grown for two months was measured under water available conditions, severe water stress, and 24, 72, and 93 h following re-watering. At the end of the drying cycle, all the cultivars reached dehydration, relative water content (RWC) ranging between 40 and 50 %. During dehydration, leaf stomatal conductance (g _s), transpiration rate (E), and net photosynthetic rate (P _N) decreased more in cvs. 57-422 and GC 8-35 than in 73-30. Instantaneous water use efficiency (WUE_i) and photosynthetic capacity (P _max) decreased mostly in cv. GC 8-35. Except in cv. GC 8-35, the activity of photosystem 1 (PS1) was only slightly affected. PS2 and ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBPCO) were the main targets of water stress. After re-watering, cvs. 73-30 and GC 8-35 rapidly regained g _s, E, and P _N activities. Twenty-four hours after re-watering, the electron transport rates and RuBPCO activity strongly increased. P _N and P _max fully recovered later. Considering the different photosynthetic responses of the studied genotype, a general characterisation of the interaction between water stress and this metabolism is presented.     

Oviposition pattern of the predator Podisus nigrispinus (Heteroptera: Pentatomidae) under different temperatures

The daily reproductive rate of Podisus nigrispinus (Dallas) (Heteroptera: Pentatomidae) fed with Alabama argillacea (Hübner) (Lepidoptera: Noctuidae) larvae was studied at constant temperatures of 20, 23, 25, 28, 30 and 33±0.2°C, relative humidity of 60±10% and photoperiod of L:D 14:10. Daily reproductive rate of P. nigripinus was affected by age of this predator. Each P. nigrispinus female laid 5.3 (20°C) to 19.9 eggs/day (28°C) which developed into 4.3–16.5 nymphs, respectively. Highest daily reproductive rate of P. nigrispinus was recorded at 28 and 30°C for 5–30-day-old females. This predator showed higher daily reproductive rate than its prey A. argillacea at 25°C. It was also able to reproduce at temperatures from 20 to 33°C with maximum daily reproductive rate between 25 and 30°C. These results are important for optimizing mass rearing of P. nigrispinus in the laboratory.     

Docking and molecular dynamics studies of peripheral site ligand–oximes as reactivators of sarin-inhibited human acetylcholinesterase

In the present work, we performed docking and molecular dynamics simulations studies on two groups of long-tailored oximes designed as peripheral site binders of acetylcholinesterase (AChE) and potential penetrators on the blood brain barrier. Our studies permitted to determine how the tails anchor in the peripheral site of sarin-inhibited human AChE, and which aminoacids are important to their stabilization. Also the energy values obtained in the docking studies corroborated quite well with the experimental results obtained before for these oximes.     

Ticks (Acari: Ixodidae) of the state of Amazonas,Brazil

The tick fauna of Brazil is currently composed by 72 species. The state of Amazonas is the largest of Brazil, with an area of ≈ 19% of the Brazilian land. Besides its vast geographic area, only 19 tick species have been reported for Amazonas. Herein, lots containing ticks from the state of Amazonas were examined in three major tick collections from Brazil. A total of 5933 tick specimens were examined and recorded, comprising 2693 males, 1247 females, 1509 nymphs, and 484 larvae. These ticks were identified into the following 22 species: Amblyomma cajennense sensu lato, Amblyomma calcaratum, Amblyomma coelebs, Amblyomma dissimile, Amblyomma dubitatum, Amblyomma geayi, Amblyomma goeldii, Amblyomma humerale, Amblyomma latepunctatun, Amblyomma longirostre, Amblyomma naponense, Amblyomma oblongoguttatum, Amblyomma ovale, Amblyomma rotundatum, Amblyomma scalpturatum, Amblyomma varium, Dermacentor nitens, Haemaphysalis juxtakochi, Ixodes cf. Ixodes fuscipes, Ixodes luciae, Rhipicephalus microplus, Rhipicephalus sanguineus sensu lato. Ticks were collected from 17 (27.4%) out of the 62 municipalities that currently compose the state of Amazonas. The following four species are reported for the first time in the state of Amazonas: A. coelebs, A. dubitatum, H. juxtakochi, and Ixodes cf. I. fuscipes. The only tick species previously reported for Amazonas and not found in the present study is Amblyomma parvum. This study provides a great expansion of geographical and host records of ticks for the state of Amazonas, which is now considered to have a tick fauna composed by 23 species. It is noteworthy that we report 1391 Amblyomma nymphs that were identified to 13 different species.     

Partial decline of Arachis hypogaea L. photosynthesis triggered by drought stress

Photosynthetic capacity (PC) of three peanut cultivars (Arachis hypogaea L. cvs. 57-422, 73-30, and GC 8-35) decreased during drought stress (decline in relative water content from ca. 95 to 70 %) and recovered two days after rewatering. Mild water stress was not limiting for the total ribulose-1,5-bisphosphate carboxylase/oxygenase activity, since this enzyme activity increased under drought. Photosystem (PS) 2 and PS1 (the latter only in cv. GC 8-35) electron transport activities decreased under drought. The ratio of the variable to maximal chlorophyll fluorescence (Fv/Fm) decreased mainly in the cv. GC 8-35. All cultivars showed decreases in photochemical quenching (qP) and quantum yield of PS2 electron transport (Φe). Increase of basal fluorescence (F0) was observed in the cvs. 73-30 and GC 8-35, while the cv 57-422 showed a decrease. After rewatering a sharp increase was observed in the majority of the parameters. Thus under the present stress conditions, the cv GC 8-35 was the most affected for all the parameters under study. The cv. 57-422 showed a higher degree of tolerance being gradually affected in photosynthetic capacity (PC) in contrast to the two other cvs. which showed a sharp decrease in PC at the beginning of the drought cycle. This revised version was published online in September 2006 with corrections to the Cover Date.     

Photosynthetic responses of Coffea arabica leaves to a short-term high light exposure in relation to N availability

It is known that the coffee (Coffea arabica L.) plant which is originally from shade habitats would have a limited ability to grow under full sun. Previous work has shown that nitrogen fertilisation can reduce the leaf damage when the plants are exposed to high light intensities during several days. In the present work we aimed to study the effects of the high irradiance during the first hours and evaluate the positive contribution of nitrogen fertilisation in the case of short-term exposure to strong light. Young plants (1.5–2 years old) grown in 1.5 kg of a mixed soil were supplemented with a nutrient solution containing 15 mM nitrogen in the form of NH₄NO₃, every 7 days (2N treatment), 15 days (1N treatment) and 45 days (0N treatment). Top mature leaves were exposed to a photosynthetic photon flux density of 1 500 μmol m^?2 s^?1 for a maximal period of 8 h, and changes in photosynthesis and pigment composition were monitored along the period of high light exposure. Photosynthetic capacity, leaf conductance to water vapour, electron transport capacity and maximum carboxylation activity, as well as some leaf fluorescence parameters (minimal fluorescence, photochemical efficiency of PSII and quantum yield of photosynthetic electron transport) were reduced by the stress, with a generally stronger impact observed in the 0N plants. The photochemical quenching was affected only in the 0N plants, while the non-photochemical quenching increased in 2N plants but decreased in the 0N ones. The results showed that 2N plants presented a better initial status of the photosynthetic parameters and of the content of photoprotective pigments. Those plants showed ability to trigger some protective mechanisms, as observed by the tendency to increase the xanthophyll pool content, specially in zeaxanthin and in non-photochemical quenching. Also, protein content presented a tendency to increase after 1.5 h, which was maintained until the end of the high light period. We conclude that nitrogen availability is a key factor in the acclimation process to high light.     

Photosynthetic Performance and Pigment Composition of Leaves from two Tropical Species is Determined by Light Quality

Abstract: A suitable light quantity and quality is essential for optimal photosynthetic metabolism. Using combinations of three lamp types, the impact of the quality of artificial light conditions on the photosynthetic apparatus of leaves developed in growth chambers was analysed. The VIALOX‐Planta lamps are quite poor outside the green to orange (520 ‐ 620 nm) wavelength range, while the HQI‐BT lamps present a more uniform spectral intensity between 425 and 650 nm (blue to red). The halogen lamps are particularly rich in the red and far red range of the electromagnetic spectra. The lamps also differ in the red: far red ratio, which were 3.07 (VIALOX), 2.06 (HQI‐BT) and 1.12 (halogen). Clear positive effects were detected in most of the photosynthetic parameters in relation to light quality, both at stomatal and mesophyll levels. Despite some species‐dependent sensitivity to blue and red/far red wavelengths, observed among the studied parameters, the best photosynthetic performances of the test plants (Packyrhizus ahipa and Piatã, a hybrid of Coffea dewevrei×Coffea arabica) were obtained almost always with the reinforcement of blue (HQI‐BT lamps), red and far red (halogen lamps) wavelengths and with a red: far red ratio closer to that observed in nature. This suggests the involvement of more than one photoreceptor family in photosynthetic performance. Under such light conditions, increases in net photosynthesis and stomatal conductance were observed and, despite the moderate effects on photosynthetic capacity, strong effects were observed in the capture and transfer of light energy in the antennae pigments, photochemical efficiency of photosystem II and electron transport. This was related to the striking quantitative and qualitative impacts observed on total chlorophylls and carotenoids, which reached, in some cases, increases of 100 and 200 %, respectively. Among carotenoids, increases as high as 9‐fold for α‐carotene were observed (P. ahipa), with chlorophyll (a/b), total (chlorophyll/carotenoid) and carotene (α/β) ratios also strongly affected. This would have affected the structure and stability of photosynthetic membranes which, in turn, affected photosynthetic‐related processes (e.g., antennae pigments, photosystem II and electron transport efficiencies). This was particularly clear in the HQI + halogen treatment. The results unequivocally show that light quality could remain a clear limiting factor for leaf/plant development under artificial light conditions, which could be overcome using more than one lamp type, with complementary emission spectra.