Genomic insights into selection for heterozygous alleles and woody traits in Populus tomentosa

Heterozygous alleles are widespread in outcrossing and clonally propagated woody plants. The variation in heterozygosity that underlies population adaptive evolution and phenotypic variation, however, remains largely unknown. Here, we describe a de novo chromosome-level genome assembly of Populus tomentosa, an economic and ecologically important native tree in northern China. By resequencing 302 natural accessions, we determined that the South subpopulation (Pop_S) encompasses the ancestral strains of P. tomentosa, while the Northwest subpopulation (Pop_NW) and Northeast subpopulation (Pop_NE) experienced different selection pressures during population evolution, resulting in significant population differentiation and a decrease in the extent of heterozygosity. Analysis of heterozygous selective sweep regions (HSSR) suggested that selection for lower heterozygosity contributed to the local adaptation of P. tomentosa by dwindling gene expression and genetic load in the Pop_NW and Pop_NE subpopulations. Genome-wide association studies (GWAS) revealed that 88 single nucleotide polymorphisms (SNPs) within 63 genes are associated with nine wood composition traits. Among them, the selection for the homozygous AA allele in PtoARF8 is associated with reductions in cellulose and hemicellulose contents by attenuating PtoARF8 expression, and the increase in lignin content is attributable to the selection for decreases in exon heterozygosity in PtoLOX3 during adaptive evolution of natural populations. This study provides novel insights into allelic variations in heterozygosity associated with adaptive evolution of P. tomentosa in response to the local environment and identifies a series of key genes for wood component traits, thereby facilitating genomic-based breeding of important traits in perennial woody plants.     

Multistimuli-responsive fluorescence behaviours of aggregation-induced emission small-molecule and electrospun nanofibre films for acid–base vapour sensing

Multistimuli-responsive fluorescent materials have garnered great research interest benefited from their practical applications. Two twisted-structure compounds containing tetraphenylethylene (TPE) as the aggregation-induced emission (AIE) group and a pyridine unit as the acid reaction site to obtain new multistimuli-responsive fluorescent compounds (namely, TPECNPy: TPECNPy-2 and TPECNPy-3) were successfully synthesized through a one-step Knoevenagel condensation reaction. The multiple-stimuli response process of TPECNPy was investigated by means of photoluminescence (PL) spectra and emission colour. The results showed that both TPECNPy compounds with excellent AIE abilities displayed reversible emission wavelength and colour changes in response to multiple external stimuli, including grinding–fuming by CH₂Cl₂ or annealing and HCl-NH₃ vapour fuming. More importantly, fluorescent nanofibre films were prepared by electrospinning a solution of TPECNPy mixed with cellulose acetate (CA), and these exhibited reversible acid-induced discolouration, even with only 1 wt% TPECNPy. The results of this study may inspire strategies for designing multistimuli-responsive materials and preparing fluorescent sensing nanofibre films.     

2001—2019年中国自然保护区生态环境质量时空变化特征及其驱动力

自然保护区对维护生物多样性,改善生态环境质量具有重要作用。然而,我国自然保护区生态环境质量变化及其对自然因素与人类活动的响应规律还不清晰,理解这些规律对我国的生态文明建设以及生物多样性的保护具有重要意义。基于2001—2019年中国历史高分辨率生态环境质量数据CHEQ数据集以及自然因素,利用Theil-Sen Median趋势分析、Mann-Kendall检验以及多元回归残差分析等方法,探究了2001—2019年中国自然保护区的生态环境质量时空变化特征及其对自然因素与人类活动驱动因素的响应。结果表明：(1)我国自然保护区的CHEQ指数呈现多阶段波动变化,总体呈小幅度下降趋势,平均趋势率为-0.54×10^-3/a;在空间上,中国自然保护区CHEQ变化趋势值呈“南高北低,东高西低”的分布格局;(2)自然因素与人类活动的共同作用是我国自然保护区生态环境质量恶化的主要原因,且恶化区域主要分布在自然保护区的实验区和缓冲区。其中自然因素对我国自然保护区生态环境质量变化的影响在-3×10^-3/a—0/a之间,人类活动的影响在-1×10^-3     

三江源国家公园草地地上生物量时空动态及其气候影响

三江源区位于青藏高原腹地,作为长江、黄河、澜沧江三大河流的发源地,是我国重要的生态安全屏障。基于三江源区域草地AGB的野外调查数据,本研究采用多种机器学习算法集成分析的方式构建模型,实现了高精度的三江源国家公园草地AGB时空估算。基于AGB时空模拟结果,分析了近19年(2000—2018年)三江源国家公园区域草地AGB的时空动态变化。研究结果显示：(1)通过多种机器学习结合贝叶斯平均模型,草地AGB模拟值与实测值的r为0.88,RMSE为71.60g/m²,表明多模型集成分析的方式对草地AGB估算获得了较好的模拟效果。(2)三江源国家公园区域草地AGB的空间分布具有明显的空间异质性,呈从东南向西北递减的趋势。(3)2000—2018年长江源国家公园、黄河源国家公园和澜沧江国家公园区域草地AGB多年平均值分别为82.96 g/m²、117.54g/m²和168.39 g/m²。(4)近19年间,在黄河和长江源园区受到温度上升的影响草地AGB呈现出非显著性上升趋势;澜沧江区域,由于2015和2016年的...     

2010-2019年不同海湾迁徙水鸟栖息地适宜性变化对比研究

滨海湿地是迁徙水鸟的重要迁飞通道和主要栖息地,评估沿海迁徙水鸟栖息地适宜性及变化态势能为栖息地的合理规划与管理提供科学参考,对迁徙水鸟的保护有重要意义。选择紧邻城市和乡村的深圳湾和雷州湾为研究区,在水鸟栖息地生态系统类型分类的基础上,通过层次分析法确定水鸟栖息地适宜性评价因子,设计栖息地、食物、水分、人类干扰条件及其子类的权重,对栖息地适宜性进行等级划分,分析比较2010-2019年迁徙水鸟栖息地适宜性的时空分布差异,探索适宜性变化差异的原因并给出合理化建议。结果表明：（1）2010-2019年深圳湾有193.4 hm²强干扰区域转变化为中等及弱干扰;雷州湾有16.36 hm²的中等干扰转化为弱、无干扰;（2）深圳湾栖息地适宜性以中等适宜类型为主,2010年和2019年面积占比分别为83.74%和88.71%;雷州湾栖息地适宜性主要以较适宜和中等适宜类型为主,2010年面积占比为86.72%,2010-2019年面积占比基本不变,总体适宜性高于深圳湾。（3）2010-2019年,深圳湾不适宜和较适宜面积分别减少245.54 hm²和26.37 hm²,均转化为中等适宜类型;雷州湾有24.31 hm²的中等和较适宜栖息地转化为适宜类型。     

Dominant role of local dipoles in stabilizing uncompensated charges on a sulfate sequestered in a periplasmic active transport protein.

Electrostatic interactions are among the key factors determining the structure and function of proteins. Here we report experimental results that illuminate the functional importance of local dipoles to these interactions. The refined 1.7-A X-ray structure of the liganded form of the sulfate-binding protein, a primary sulfate active transport receptor of Salmonella typhimurium, shows that the sulfate dianion is completely buried and bound by hydrogen bonds (mostly main-chain peptide NH groups) and van der Waals forces. The sulfate is also closely linked, via one of these peptide units, to a His residue. It is also adjacent to the N-termini of three alpha-helices, of which the two shortest have their C-termini "capped" by Arg residues. Site-directed mutagenesis of the recombinant Escherichia coli sulfate receptor had no effect on sulfate-binding activity when an Asn residue was substituted for the positively charged His and the two Arg (changed singly and together) residues. These results, combined with other observations, further solidify the idea that stabilization of uncompensated charges in a protein is a highly localized process that involves a collection of local dipoles, including those of peptide units confined to the first turns of helices. The contribution of helix macrodipoles appears insignificant.     

Do Geographically Isolated Grasslands Follow the Principle of Island Biogeography in a Landscape Scale? Taking Poyang Lake Grassland as an Example

As one of the basic theories of biodiversity conservation, island biogeography has been widely accepted in the past decades. Originally, island biogeography was put forward and applied in oceanic environments. But later on, it was found out that the application was not only limited to oceanic islands, but also in terrestrial environments with relatively isolated conditions. In terms of biodiversity level, island biogeography generally focuses on a small scale, such as species diversity and genetic diversity. The studies of biodiversity on a large-scale based on island biogeography, such as ecosystem and landscape scales, were seldomly conducted. Taking Poyang Lake, the largest fresh water lake in China as case study area, 30 grasslands were randomly selected to study whether island biogeography can be applied to grasslands at a landscape level from three island attributes (area, distance and shape), and the most important ecological variable (flooding) in Poyang Lake. The results showed that in general, grasslands have the property of an island, and follow the basic principle of island biogeography. We found the area and flooding duration were the two most important determinants of landscape diversity. There was a significant positive correlation between the grassland area and the landscape diversity, which could be well expressed by logarithmic function model (R² = 0.73). There was a negative correlation between flooding duration and landscape diversity, which could be described by an inverse model (R² = 0.206). The distance to mainland and the shape of grassland were correlated with landscape diversity, but the fitting result of the models was not as good as expected. The possible reason could be that Poyang Lake is a seasonal lake, the water level varies with hydrological conditions, so that the grasslands are not strongly isolated and their shape is not stable enough required by island biogeography. Furthermore, it indicates that besides area, distance and shape attributes, flooding strongly affects the biodiversity of grassland vegetation, and should not be ignored when applying island biogeography theory to Poyang Lake. This study is expected to be a supplement for island biogeography in terrestrial environments, and the results are expected to benefit for the biodiversity conservation in Poyang Lake.     

湖南郴州发现岭南两头蛇

2022年8月,于湖南省郴州市永兴县湘阴渡镇（113°01′18′′E,26°11′87′′N,海拔174 m）采集到两头蛇活体标本1号,通过形态测量比较,发现所采集标本与中国广东省分布的岭南两头蛇（Calamariaarcana）形态特征基本一致;后基于线粒体Cytb基因片段进行分子系统发育分析,结果显示该标本与岭南两头蛇形成高支持率单系群（后验概率PP为1.00,自举值BS为100）,所采集标本与岭南两头蛇的遗传距离为1%。综合形态学和分子生物学证据,最终确定该标本为两头蛇科（Calamariidae）两头蛇属的岭南两头蛇,系湖南省蛇类分布新记录种。     

Terpenoids and Their Possible Role in Defense Against a Fungal Pathogen Alternaria tenuissima in Chrysanthemum morifolium Cultivars

Journal of Plant Growth Regulation - Terpenoids are a class of structurally diverse natural products involved in various plant biological processes. Their primary function is believed to provide...