Predicting zinc bioavailability to wheat improves by integrating pH dependent nonlinear root surface adsorption

Aim

Our aim was to improve the prediction of Zn bioavailability to wheat grown on low-Zn soils. The classical approach that directly relates Zn in a certain soil extract to Zn uptake has been shown to be inadequate in many cases. We tested a stepwise approach where the steps of the uptake process are characterized with, respectively, Zn solid-solution distribution, adsorption of Zn to root surface, Zn uptake into root and Zn translocation to shoot.

Methods

Two pot experiments were done with wheat grown on nine low-Zn soils varying widely in pH, clay and organic matter content. Soluble Zn concentrations in two soil extracts (DTPA and CaCl₂) were measured. Free Zn ion concentrations in CaCl₂ soil extracts were determined with the Donnan Membrane Technique. These Zn concentrations were then related to plant Zn uptake following both the direct and the stepwise approach.

Results

In the direct approach, Zn in the DTPA extract was a better predictor for shoot Zn uptake than Zn in the CaCl₂ extract. In the stepwise approach, the relationship between Zn in CaCl₂ extracts and the root surface adsorbed Zn was pH-dependent and nonlinear. Root surface adsorbed Zn was linearly related to root Zn uptake, and the latter was linearly related to the shoot Zn uptake. The stepwise approach improved the Zn uptake prediction compared to the direct approach and was also validated for different wheat cultivars.

Conclusions

The adsorption of Zn on the root surface is pH dependent and nonlinear with respect to the soil Zn concentration, and a useful proxy for bioavailable Zn over a wide range of soils.     

Prohibitin Interacts with Envelope Proteins of White Spot Syndrome Virus and Prevents Infection in the Red Swamp Crayfish,Procambarus clarkii

Prohibitins (PHBs) are ubiquitously expressed conserved proteins in eukaryotes that are associated with apoptosis, cancer formation, aging, stress responses, cell proliferation, and immune regulation. However, the function of PHBs in crustacean immunity remains largely unknown. In the present study, we identified a PHB in Procambarus clarkii red swamp crayfish, which was designated PcPHB1. PcPHB1 was widely distributed in several tissues, and its expression was significantly upregulated by white spot syndrome virus (WSSV) challenge at the mRNA level and the protein level. These observations prompted us to investigate the role of PcPHB1 in the crayfish antiviral response. Recombinant PcPHB1 (rPcPHB1) significantly reduced the amount of WSSV in crayfish and the mortality of WSSV-infected crayfish. The quantity of WSSV in PcPHB1 knockdown crayfish was increased compared with that in the controls. The effects of RNA silencing were rescued by rPcPHB1 reinjection. We further confirmed the interaction of PcPHB1 with the WSSV envelope proteins VP28, VP26, and VP24 using pulldown and far-Western overlay assays. Finally, we observed that the colloidal gold-labeled PcPHB1 was located on the outer surface of the WSSV, which suggests that PcPHB1 specifically binds to the envelope proteins of WSSV. VP28, VP26, and VP24 are structural envelope proteins and are essential for attachment and entry into crayfish cells. Therefore, PcPHB1 exerts its anti-WSSV effect by binding to VP28, VP26, and VP24, preventing viral infection. This study is the first report on the antiviral function of PHB in the innate immune system of crustaceans.     

Expression,characterization and inhibition of Toxoplasma gondii 1-deoxy-d-xylulose-5-phosphate reductoisomerase

The apicomplexan parasite Toxoplasma gondii, the causative agent of toxoplasmosis, is an important human pathogen. 1-Deoxy-d-xylulose-5-phosphate reductoisomerase (DXR) in the non-mevalonate isoprene biosynthesis pathway is essential to the organism and therefore a target for developing anti-toxoplasmosis drugs. In order to find potent inhibitors, we expressed and purified recombinant T. gondii DXR (TgDXR). Biochemical properties of this enzyme were characterized and an enzyme activity/inhibition assay was developed. A collection of 11 compounds with a broad structural diversity were tested against TgDXR and several potent inhibitors were identified with K_i values as low as 48 nM. Analysis of the results as well as those of Escherichia coli and Plasmodium falciparum DXR enzymes revealed a different structure–activity relationship profile for the inhibition of TgDXR.     

光核桃遗传资源的经济价值评估与保护

本文将光核桃遗传资源的经济价值划分为直接利用价值、间接利用价值和潜在利用价值,采用市场价格法、旅行费用法、防护费用法及类比分析法等方法对光核桃遗传资源的经济价值进行估算,并提出该资源保护与管理建议。光核桃遗传资源经济价值的评估,将为具有潜在巨大经济价值的生物遗传资源管理提供价值评估方法,同时为维护国家利益、制订生物多样性保护与管理政策及建立生物遗传资源惠益分享制度提供技术支持。     

延长光照时间对烟草叶片生长发育及光合特性的影响

以烤烟品种‘云烟87’为材料,采用夜间人工补光的方式,以自然光照时间为对照,设置增加1h、2h和3h光照3个处理,研究延长光照时间对烟草生长发育、叶绿素含量及光合作用、叶绿素荧光参数和光响应曲线的影响。结果表明:(1)与对照相比,延长光照时间2h处理下烟株叶长、叶宽、株高显著增加,1h、3h处理影响不显著。(2)延长光照处理显著降低比叶面积,提高叶片叶绿素a、b、叶绿素a+b、类胡萝卜素含量,但1h、3h处理的变化幅度小于2h处理。(3)延长光照时间1h和2h处理下叶片净光合速率(Pn)、气孔导度(Gs)、胞间CO2浓度(Ci)显著升高,3h处理影响不大;延长光照处理显著提高了PSⅡ最大光化学量子效率(Fv/Fm)、PSⅡ实际光化学量子效率(ΦPSⅡ)、光化学淬灭系数(qP),降低了非光化学淬灭系数(NPQ),其中2h处理影响幅度最大,但对初始荧光强度F0影响不显著;延长光照处理下烟草叶片的最大净光合速率(Pmax)和光饱和点(Isat)均升高,但光补偿点(Ic)没有明显的变化。研究表明,适当延长光照时间有利于叶片生长发育和干物质积累,提高叶绿素含量,促进光合作用,缓解光抑制现象,充分利用光能,提高叶片光合同化效率。     

Proteomic and physiological analyses reveal detoxification and antioxidation induced by Cd stress in Kandelia candel roots

The heavy metal Cadmium (Cd), added to the water bodies through weathering of rocks and human activities, constitutes one of the major environmental pollutants toxic to plants. This study examines the proteome changes in roots of actively growing Kandelia candel (L.) Druce when challenged with Cd. This mangrove-like species proliferates in estuaries and bays and is a potential choice for phytoremediation of Cd. A total of 53 proteins were up- or down-regulated following a short-term Cd treatment. The identities of the differentially expressed proteins were determined by MALDI-TOF/TOF. Approximately half of the up-regulated proteins are involved in oxidative response, including antioxidant enzymes, enzymes required for glutathione biosynthesis, enzymes in TCA and PPP cycles for generating ATP, NADH and NADPH. These results support the prediction that a prompt antioxidative response is necessary for the reduction of the oxidative stress caused by Cd and set the stage for further investigating of Cd up-regulated proteins in Kandelia candel.     

A flexible docking approach for prediction of T cell receptor–peptide–MHC complexes

T cell receptors (TCRs) are immune proteins that specifically bind to antigenic molecules, which are often foreign peptides presented by major histocompatibility complex proteins (pMHCs), playing a key role in the cellular immune response. To advance our understanding and modeling of this dynamic immunological event, we assembled a protein–protein docking benchmark consisting of 20 structures of crystallized TCR/pMHC complexes for which unbound structures exist for both TCR and pMHC. We used our benchmark to compare predictive performance using several flexible and rigid backbone TCR/pMHC docking protocols. Our flexible TCR docking algorithm, TCRFlexDock, improved predictive success over the fixed backbone protocol, leading to near‐native predictions for 80% of the TCR/pMHC cases among the top 10 models, and 100% of the cases in the top 30 models. We then applied TCRFlexDock to predict the two distinct docking modes recently described for a single TCR bound to two different antigens, and tested several protein modeling scoring functions for prediction of TCR/pMHC binding affinities. This algorithm and benchmark should enable future efforts to predict, and design of uncharacterized TCR/pMHC complexes.     

六盘水酸模属植物资源的初步调查研究

通过野外调查、标本采集、分类学研究及资料考证,对六盘水酸模属植物的资源进行了调查.结果表明,六盘水有酸模属植物7种,其中钝叶酸模(Rumex obtusifoliusL.)为贵州省的分布新纪录,并对酸模属植物药用价值、食用价值及生态价值等进行了分析.     

美引烤烟品种NC102品质特征分析

通过对美引烤烟品种NC102、红花大金元和K326的化学成分、致香成分和感官评吸比较分析,进一步明晰了NC102的品质特征.NC102品种烤烟在石油醚提取物总量及新植二烯含量上具有明显优势,清甜香气风格突出,与K326比,在香气的细腻度、圆润性、飘逸感方面优于K326品种,在叶组配方中可以用作次主料使用.