Analysis of direct and cross-presentation of antigens in TPPII knockout mice

Tripeptidyl peptidase II (TPPII) is an oligopeptidase forming giant complexes in the cytosol that have high exo-, but also, endoproteolytic activity. Immunohistochemically, the complexes appear as distinct foci in the cytosol. In part controversial biochemical and functional studies have suggested that TPPII contributes, on the one hand, positively to Ag processing by generating epitope carboxyl termini or by trimming epitope precursors, and, on the other, negatively by destroying potentially antigenic peptides. To clarify which of these roles is predominant, we generated and analyzed TPPII-deficient mice. Cell surface levels of MHC class I peptide complexes tended to be increased on most cell types of these mice. Although presentation of three individual epitopes derived from lymphocytic choriomeningitis virus was not elevated on TPPII-/- cells, that of the immunodominant OVA epitope SIINFEKL was significantly enhanced. Consistent with this, degradation of a synthetic peptide corresponding to the OVA epitope and of another corresponding to a precursor thereof, both being proteasomally generated OVA fragments, was delayed in TPPII-deficient cytosolic extracts. In addition, dendritic cell cross-presentation of phagocytosed OVA and of OVA internalized as an immune complex was increased to about the same level as direct presentation of the Ag. The data suggest a moderate, predominantly destructive role of TPPII in class I Ag processing, in line with our finding that TPPII is not induced by IFN-gamma, which up-regulates numerous, predominantly constructive components of the Ag processing and presentation machinery.     

Inducible gene expression with the Tet-on system in CD4+ T cells and thymocytes of mice

CD4+ T cells with their growing list of effector and regulatory subpopulations have vital functions within the immunohematopoietic system. We report here on the first mouse lines that allow temporally and quantitatively controlled expression of transgenes specifically in CD4+ thymocytes and T cells. These were constructed using the Tet-on system. The rtTA2(S)-M2 version of the reverse tetracycline-dependent transactivator was placed under control of all known CD4 regulatory elements. Reporter transgene expression in mice expressing these constructs is highly specific for CD4+ cells, is strictly dependent on the tetracycline derivative doxycycline, and can be regulated by up to five logs depending on the doxycycline concentration. Moreover, we demonstrate that these mice can be used for noninvasive in vivo imaging of a coexpressed luciferase reporter. These new mouse lines should be highly valuable for studying and manipulating numerous aspects of CD4+ T cell development, biology, and function.     

Long‐term balanced fertilization increases the soil microbial functional diversity in a phosphorus‐limited paddy soil

The influence of long‐term chemical fertilization on soil microbial communities has been one of the frontier topics of agricultural and environmental sciences and is critical for linking soil microbial flora with soil functions. In this study, 16S rRNA gene pyrosequencing and a functional gene array, geochip 4.0, were used to investigate the shifts in microbial composition and functional gene structure in paddy soils with different fertilization treatments over a 22‐year period. These included a control without fertilizers; chemical nitrogen fertilizer (N); N and phosphate (NP); N and potassium (NK); and N, P and K (NPK). Based on 16S rRNA gene data, both species evenness and key genera were affected by P fertilization. Functional gene array‐based analysis revealed that long‐term fertilization significantly changed the overall microbial functional structures. Chemical fertilization significantly increased the diversity and abundance of most genes involved in C, N, P and S cycling, especially for the treatments NK and NPK. Significant correlations were found among functional gene structure and abundance, related soil enzymatic activities and rice yield, suggesting that a fertilizer‐induced shift in the microbial community may accelerate the nutrient turnover in soil, which in turn influenced rice growth. The effect of N fertilization on soil microbial functional genes was mitigated by the addition of P fertilizer in this P‐limited paddy soil, suggesting that balanced chemical fertilization is beneficial to the soil microbial community and its functions.     

Unexpected CH4 emission from the Three Gorges Reservoir and its implications

Until the end of last century, scientists began to show their concern about greenhouse gas emission from reservoirs and questioned the “green credential” of hydroelectric dams since then. Through measurements along the channel of the TGR, an unexpectedly low CH₄ emission rate was recently observed from the surface of the TGR, much lower than our assumed estimate before. Moreover, the rate from the TGR is lower than that from many hydroelectric reservoirs. One possible reason for such a low emission rate is that lack of substrates supplied by decomposed vegetation limits the CH₄ production in the sediment of the TGR because of vegetation clearance since 2002 before impounding, whose primary purpose is to conserve the water quality. These results indicated that TGR is not a hotspot of CH₄ emission. On a broader sense, it also indicated that removal of flooded vegetation would help to decrease CH₄ emission from dam reservoirs before impounding, especially in the drawdown area.     

京津水源区小流域土壤侵蚀空间模拟

针对京津水源区生态环境脆弱、水土流失空间分异大、突发性强等问题,以河北省平泉县东北沟典型小流域为例,采用GIS技术与CSLE模型对其土壤侵蚀进行二维空间模拟及侵蚀规律研究,并对模型模拟精度进行验证.结果表明:模型确定性系数>0.85,模拟结果可信度高;小流域侵蚀模数为2359.24t·km-2·a-1,属于轻度侵蚀,侵蚀主要源于15°以上坡面,占侵蚀总量的92.1%;土壤侵蚀模数随坡度先逐渐增加,当坡度>45°时,土壤侵蚀模数有减小的趋势;土壤侵蚀模数空间异质性显著,坡耕地侵蚀模数最大,为6112.90tkm-2·a-1;荒草地占总面积33.2%,侵蚀量却达总量的74.9% ;59.3%的侵蚀来自阳坡和半阳坡,而阴坡半阴坡仅占流域侵蚀量的16.2%.研究为利用CSLE模型对小流域土壤侵蚀进行空间模拟提供技术范例,为京津水源区土壤侵蚀规律研究及水土保持生态建设提供科学参考.     

寡肽转运蛋白PepT2原核表达质粒的构建及其表达初探

寡肤转运蛋白(PepT2,peptide transporter,SLC15A2)是哺乳动物体内能够转运二肤、三肽的蛋白.研究表明,一些类肽的小分子药物也是PepT2的底物,但PepT2的结构与生物学功能尚待研究.建立稳定表达PepT2的表达体系是研究PepT2的重要环节.根据GenBank中人PepT2基因序列,借助Primer5.0设计了1对寡核苷酸引物,经PCR合成长达2 190bp的目的序列,通过重组构建pET30a(+)/PepT2表达质柱,测序分析确认目的基因中的3个碱基发生突变.初步研究了pET30a(+)/PepT2在大肠杆菌BL21(DE3)pLysS中的表达,为PepT2原核表达的进一步科研和实际应用奠定了基础.     

Unexpected CH4 emission from the Three Gorges Reservoir and its implications

Until the end of last century, scientists began to show their concern about greenhouse gas emission from reservoirs and questioned the “green credential” of hydroelectric dams since then. Through measurements along the channel of the TGR, an unexpectedly low CH₄ emission rate was recently observed from the surface of the TGR, much lower than our assumed estimate before. Moreover, the rate from the TGR is lower than that from many hydroelectric reservoirs. One possible reason for such a low emission rate is that lack of substrates supplied by decomposed vegetation limits the CH₄ production in the sediment of the TGR because of vegetation clearance since 2002 before impounding, whose primary purpose is to conserve the water quality. These results indicated that TGR is not a hotspot of CH₄ emission. On a broader sense, it also indicated that removal of flooded vegetation would help to decrease CH₄ emission from dam reservoirs before impounding, especially in the drawdown area.     

Involvement of regulatory volume decrease in the migration of nasopharyngeal carcinoma cells

The transwell chamber migration assay and CCD digital camera imaging techniques were used to investigate the relationship between regulatory volume decrease (RVD) and cell migration in nasopharyngeal carcinoma cells (CNE-2Z cells). Both migrated and non-migrated CNE-2Z cells, when swollen by 47% hypotonic solution, exhibited RVD which was inhibited by extracellular application of chloride channel blockers adenosine 5‘-triphosphate (ATP), 5-nitro-2-(3-phenylpropylamino) benzoic acid (NPPB) and tamoxifen. However, RVD rate in migrated CNE-2Z cells was bigger than that of non-migrated cells and the sensitivity of migrated cells to NPPB and tamoxifen was higher than that of nonmigrated cells. ATP, NPPB and tamoxifen also inhibited migration of CNE-2Z cells. The inhibition of migration was positively correlated to the blockage of RVD, with a correlation coefficient (r) = 0.99, suggesting a functional relationship between RVD and cell migration. We conclude that RVD is involved in cell migration and RVD may play an important role in migratory process in CNE-2Z cells.     

The JIL-1 kinase regulates the structure of Drosophila polytene chromosomes

The JIL-1 kinase localizes to interband regions of Drosophila polytene chromosomes and phosphorylates histone H3 Ser10. Analysis of JIL-1 hypomorphic alleles demonstrated that reduced levels of JIL-1 protein lead to global changes in polytene chromatin structure. Here we have performed a detailed ultrastructural and cytological analysis of the defects in JIL-1 mutant chromosomes. We show that all autosomes and the female X chromosome are similarly affected, whereas the defects in the male X chromosome are qualitatively different. In polytene autosomes, loss of JIL-1 leads to misalignment of interband chromatin fibrils and to increased ectopic contacts between nonhomologous regions. Furthermore, there is an abnormal coiling of the chromosomes with an intermixing of euchromatic regions and the compacted chromatin characteristic of banded regions. In contrast, coiling of the male X polytene chromosome was not observed. Instead, the shortening of the male X chromosome appeared to be caused by increased dispersal of the chromatin into a diffuse network without any discernable banded regions. To account for the observed phenotypes we propose a model in which JIL-1 functions to establish or maintain the parallel alignment of interband chromosome fibrils as well as to repress the formation of contacts and intermingling of nonhomologous chromatid regions. Electronic Supplementary Material Supplementary material is available for this article at and accessible for authorised users