Comparative phylogeography and the identification of genetically divergent areas for conservation

Genetic diversity is recognized as a fundamental component of biodiversity and its protection is incorporated in several conventions and policies. However, neither the concepts nor the methods for assessing conservation value of the spatial distribution of genetic diversity have been resolved. Comparative phylogeography can identify suites of species that have a common history of vicariance. In this study we explore the strengths and limitations of Faith's measure of 'Phylogenetic Diversity' (PD) as a method for predicting from multiple intraspecific phylogeographies the underlying feature diversity represented by combinations of areas. An advantage of the PD approach is that information on the spatial distribution of genetic diversity can be combined across species and expressed in a form that allows direct comparison with patterns of species distributions. It also seeks to estimate the same parameter, feature diversity, regardless of the level of biological organization. We extend the PD approach by using Venn diagrams to identify the components of PD, including those unique to or shared among areas and those which represent homoplasy on an area tree or which are shared across all areas. PD estimation should be complemented by analysis of these components and inspection of the contributing phylogeographies. We illustrate the application of the approach using mtDNA phylogeographies from vertebrates resident in the wet tropical rainforests of north-east Queensland and compare the results to biodiversity assessments based on the distribution of endemic vertebrate species. The genetic vs. species approaches produce different assessments of conservation value, perhaps reflecting differences in the temporal and spatial scale of the determining processes. The two approaches should be seen as complementary and, in this case, conservation planning should incorporate information on both dimensions of biodiversity.     

Effects of environmental stress cascade up through four trophic levels in a salt marsh study system

1. Although in recent years there have been a number of studies demonstrating trophic cascades in terrestrial systems, it is still unclear what environmental conditions enable or enhance such cascades, especially among four trophic levels. 2. In this study, the influence of environmental stress (increased soil pore water salinity) on a four trophic level study system in a Florida salt marsh was examined by experimentally increasing soil pore water salinity. Effects of increased salinity on the quality of the host plant, Batis maritima, were assessed, as were resulting effects on the lepidopteran herbivore Ascia monuste, and the primary parasitoids and hyperparasitoids of its caterpillars. 3. Increased salinity altered host‐plant quality, which subsequently affected the consumer species. These effects of altered plant quality cascaded up through the herbivore and primary parasitoid to the hyperparasitoid Hypopteromalus inimicus, influencing its density, sex ratio, body size, and initial egg load. 4. These results demonstrate how heterogeneity in environmental stress can result in effects that cascade up through four trophic levels. We suggest that such strong effects at higher trophic levels may be more likely in systems in which relationships are more specific and intimate such as those among hosts, parasitoids, and hyperparasitoids.     

Carbon sequestration in tropical forests and water: a critical look at the basis for commonly used generalizations

Tree planting in the tropics is conducted for a number of reasons including carbon sequestration, but often competes with increasingly scarce water resources. The basics of forest and water relations are frequently said to be well understood but there is a pressing need to better understand and predict the hydrological effects of land‐use and climate change in the complex and dynamic landscapes of the tropics. This will remain elusive without the empirical data required to feed hydrological process models. It is argued that the current state of knowledge is confused by too broad a use of the terms ‘forest’ and ‘(af)forestation’, as well as by a bias towards using data generated mostly outside the tropics and for nondegraded soil conditions. Definitions of forest, afforestation and reforestation as used in the climate change community and their application by land and water managers need to be reconciled.     

Guilt by Association: The Culture of Accusation and the American Anthropological Association's Investigation of Darkness in El Dorado

The American Anthropological Association's investigation of the charges in Darkness in El Dorado (Tierney 2000) found that the late James Neel and Napoleon Chagnon harmed the Yanomami in the course of their research in Venezuela and Brazil, and that Chagnon had violated the ethics code of the association. The association's inquiry contravened its own policy prohibiting ethics adjudications and was structured not by the standards of an objective investigation but by aspects of contemporary anthropology. Moralized approaches to information and postmodern rejection of objectivity mark the language and methods of the inquiry. The investigating task force did not observe reasonable standards of evidence, the targets of the investigation were not represented, and task force members were compromised by conflicts of interest. The investigation and its collateral activities reflect a culture of accusation and an anthropology uncertain of its ethical or scientific stature.     

Breeding status, contaminant burden and helminth parasites of Northern Fulmars Fulmarus glacialis from the Canadian high Arctic

We studied the relationship between contaminant concentrations in livers, endohelminth prevalence and physiological indices of chronic stress (spleen size, heterophil/lymphocyte ratios) in Northern Fulmars Fulmarus glacialis collected during the breeding season in Nunavut, Canada. No blood parasites were found, similar to reports for other petrel species elsewhere. However, 54% of Fulmars had gastrointestinal helminths, principally cestodes (52% prevalence, mean intensity of 11 worms), nematodes (34% prevalence, 3.6 worms) and acanthocephalans (3%, eight worms). Both prevalence and intensity of helminth infections were lower for Arctic Fulmars than for Fulmars and other petrels found in southern parts of the species' range. Spleen size was not significantly related to either contaminant concentration or presence of parasites, suggesting that Fulmar health was generally unaffected by contaminant and parasite levels at the colony. However, we cannot rule out the possibility that Fulmars with higher parasitaemias or contaminant loads were in poorer condition and did not attend the breeding colony.     

The taxonomy, biogeography and host plant relationships of jumping plant-lice (Hemiptera: Psyllidae) associated with creosote bushes (Larrea spp., Zygophyllaceae)

Abstract.  The Neotropical genus Panisopelma (Psyllidae: Aphalaroidinae) is revised and its internal phylogeny analysed. The constituent species, including five new ones, are described and illustrated. Keys are provided for the adults and the last instar larvae. Eight species are associated with creosote bushes ( Larrea , Zygophyllaceae): five with L. nitida and three with L. divaricata . There is evidence that another three species, the larvae of which are unknown, also develop on L. divaricata . Seven species are restricted to Argentina, one to Bolivia and three to Chile. The cladistic analysis based on male, female and larval morphological characters yielded a single most-parsimonious tree. The species associated with L. nitida form a monophyletic clade, those on L. divaricata , by contrast, are paraphyletic. One clade with three species is restricted to Argentina, but three clades each contain a species from Argentina and Chile. Although a close association exists between Panisopelma and Larrea , there is no evidence for cospeciation, but rather an initial shift from an unknown host to L. divaricata and a second shift from L. divaricata to L. nitida . In three species pairs of Panisopelma , the distribution patterns suggest geographical vicariance between Argentina and Chile.     

Distinguishing between population bottleneck and population subdivision by a Bayesian model choice procedure

Although most natural populations are genetically subdivided, they are often analysed as if they were panmictic units. In particular, signals of past demographic size changes are often inferred from genetic data by assuming that the analysed sample is drawn from a population without any internal subdivision. However, it has been shown that a bottleneck signal can result from the presence of some recent immigrants in a population. It thus appears important to contrast these two alternative scenarios in a model choice procedure to prevent wrong conclusions to be made. We use here an Approximate Bayesian Computation (ABC) approach to infer whether observed patterns of genetic diversity in a given sample are more compatible with it being drawn from a panmictic population having gone through some size change, or from one or several demes belonging to a recent finite island model. Simulations show that we can correctly identify samples drawn from a subdivided population in up to 95% of the cases for a wide range of parameters. We apply our model choice procedure to the case of the chimpanzee (Pan troglodytes) and find conclusive evidence that Western and Eastern chimpanzee samples are drawn from a spatially subdivided population.