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31.
Rosalba Lepore Andriy Kryshtafovych Markus Alahuhta Harshul A. Veraszto Yannick J. Bomble Joshua C. Bufton Alex N. Bullock Cody Caba Hongnan Cao Owen R. Davies Ambroise Desfosses Matthew Dunne Krzysztof Fidelis Celia W. Goulding Manickam Gurusaran Irina Gutsche Christopher J. Harding Marcus D. Hartmann Christopher S. Hayes Andrzej Joachimiak Petr G. Leiman Peter Loppnau Andrew L. Lovering Vladimir V. Lunin Karolina Michalska Ignacio Mir-Sanchis AK Mitra John Moult George N. Phillips Jr Daniel M. Pinkas Phoebe A. Rice Yufeng Tong Maya Topf Jonathan D. Walton Torsten Schwede 《Proteins》2019,87(12):1037-1057
The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP13 experiment. 相似文献
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Detection of pathogenic Vibrio spp. in shellfish by using multiplex PCR and DNA microarrays 总被引:1,自引:0,他引:1
This study describes the development of a gene-specific DNA microarray coupled with multiplex PCR for the comprehensive detection of pathogenic vibrios that are natural inhabitants of warm coastal waters and shellfish. Multiplex PCR with vvh and viuB for Vibrio vulnificus, with ompU, toxR, tcpI, and hlyA for V. cholerae, and with tlh, tdh, trh, and open reading frame 8 for V. parahaemolyticus helped to ensure that total and pathogenic strains, including subtypes of the three Vibrio spp., could be detected and discriminated. For DNA microarrays, oligonucleotide probes for these targeted genes were deposited onto epoxysilane-derivatized, 12-well, Teflon-masked slides by using a MicroGrid II arrayer. Amplified PCR products were hybridized to arrays at 50 degrees C and detected by using tyramide signal amplification with Alexa Fluor 546 fluorescent dye. Slides were imaged by using an arrayWoRx scanner. The detection sensitivity for pure cultures without enrichment was 10(2) to 10(3) CFU/ml, and the specificity was 100%. However, 5 h of sample enrichment followed by DNA extraction with Instagene matrix and multiplex PCR with microarray hybridization resulted in the detection of 1 CFU in 1 g of oyster tissue homogenate. Thus, enrichment of the bacterial pathogens permitted higher sensitivity in compliance with the Interstate Shellfish Sanitation Conference guideline. Application of the DNA microarray methodology to natural oysters revealed the presence of V. vulnificus (100%) and V. parahaemolyticus (83%). However, V. cholerae was not detected in natural oysters. An assay involving a combination of multiplex PCR and DNA microarray hybridization would help to ensure rapid and accurate detection of pathogenic vibrios in shellfish, thereby improving the microbiological safety of shellfish for consumers. 相似文献
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Adults of the human parasitic trematode Schistosoma mansoni, which causes
hepatosplenic/intestinal complications in humans, synthesize
glycoconjugates containing the Lewis x (Lex) Galbeta1-->4(Fucalpha1--
>3)GlcNAcbeta1-->R, but not sialyl Lewis x (sLex), antigen. We now
report on our analyses of Lexand sLexexpression in S.haematobium and
S.japonicum, which are two other major species of human schistosomes that
cause disease, and the possible autoimmunity to these antigens in infected
individuals. Antigen expression was evaluated by both ELISA and Western
blot analyses of detergent extracts of parasites using monoclonal
antibodies. Several high molecular weight glycoproteins in both S.
haematobium and S. japonicum contain the Lexantigen, but no sialyl
Lexantigen was detected. In addition, sera from humans and rodents infected
with S.haematobium and S.japonicum contain antibodies reactive with Lex.
These results led us to investigate whether Lexantigens are expressed in
other helminths, including the parasitic trematode Fasciola hepatica , the
parasitic nematode Dirofilaria immitis (dog heartworm), the ruminant
nematode Haemonchus contortus , and the free-living nematode Caenorhabditis
elegans . Neither Lexnor sialyl-Lexis detectable in these other helminths.
Furthermore, none of the helminths, including schistosomes, express Lea,
Leb, Ley, or the H- type 1 antigen. However, several glycoproteins from all
helminths analyzed are bound by Lotus tetragonolobus agglutinin , which
binds Fucalpha1-->3GlcNAc, and Wisteria floribunda agglutinin, which
binds GalNAcbeta1-->4GlcNAc (lacdiNAc or LDN). Thus, schistosomes may be
unique among helminths in expressing the Lexantigen, whereas many different
helminths may express alpha1,3-fucosylated glycans and the LDN motif.
相似文献
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Long-term pattern of population dynamics in the field vole from central Europe: cyclic pattern with amplitude dampening 总被引:1,自引:0,他引:1
Ana Gouveia Vladimír Bejček Jiří Flousek František Sedláček Karel Šťastný Jan Zima Nigel G. Yoccoz Nils Chr. Stenseth Emil Tkadlec 《Population Ecology》2015,57(4):581-589
The subject of population cycles is regarded as controversial due to a number of unsettled questions such as whether or not cyclic patterns are governed by the same processes at high and low latitudes in Europe. Recent evidence suggests that the dynamics at high and low latitudes share the common temporal pattern of vole dynamics referred to as collapsing population cycles. Despite concurrent interest, the key contention around the causal mechanisms that drive population cycles remains a hot topic in ecology. The aims of this study are to supplement information on the seasonal population dynamics of the field vole Microtus agrestis in the Czech Republic by analysing 25 years of time series data. By applying robust estimation procedures, we estimated several parameters to describe population dynamics, such as population variability, amplitude dampening, cycle period, order of the dynamics and the structure of density dependence. The parameters indicate that field vole dynamics in central Europe are highly variable, cyclic dynamics of order two, with peaks in abundance occurring regularly at intervals of 4–5 years. In addition to exhibiting population cycles, the field vole populations show a pattern of dampened amplitude as observed elsewhere in Europe, including northern latitudes. By analysing temporal trends in seasonal abundances, population growth rates and environmental temperatures, we did not obtain evidence to support the hypothesis that amplitude dampening results from the negative effect of increasingly mild winters on winter population growth rates. 相似文献
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S. P. Das S. Swain D. Bej P. Jayasankar J. K. Jena P. Das 《Zeitschrift fur angewandte Ichthyologie》2015,31(3):583-584
Length–weight relationships are reported for four Indian carps. The length–weight relationship was W = 0.01123L3.355 for Cirrhinus mrigala, W = 0.07354L3.299 for Catla catla, W = 0.04066L3.313 for Labeo rohita and W = 0.11489L2.732 for Labeo fimbriatus. LWR estimates for C. mrigala and L. fimbriatus had not been previously reported in FishBase. 相似文献
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