MicroRNA‐93‐5p expression in tumor tissue and its tumor suppressor function via targeting programmed death ligand‐1 in colorectal cancer

This work aimed to investigate miR‐93‐5p expression in tumor tissue and its in vitro effects in colorectal cancer (CRC) by targeting programmed death ligand‐1 (PD‐L1). MiR‐93‐5p and PD‐L1 expression was detected in CRC and adjacent normal tissues by quantitative real‐time polymerase chain reaction and immunohistochemistry. The correlation between miR‐93‐5p and PD‐L1 was validated by a dual‐luciferase reporter assay. HCT116 and SW480 cells were divided into blank, miR‐NC, miR‐93‐5p mimics, miR‐93‐5p inhibitor, PD‐L1 small interfering RNA (siRNA) and miR‐93‐5p inhibitor + PD‐L1 siRNA groups, and wound‐healing and transwell assays were performed to detect cell migration and invasion, respectively. Protein expression was measured by western blotting. The secretion of cytokines was detected in the CRC cell/T coculture models. MiR‐93‐5p was downregulated in CRC tissues with upregulated PD‐L1. In PD‐L1‐negative patients, miR‐93‐5p expression was increased compared with that in PD‐L1‐positive patients. MiR‐93‐5p and PD‐L1 expression levels were associated with the tumor differentiation, lymphatic metastasis, TNM, Duke's stage, and prognosis of CRC. PD‐L1 siRNA weakened the migration and invasion abilities via decreased expression of matrix metalloproteinase‐1 (MMP‐1), ‐2, and ‐9, and these effects were abolished by the miR‐93‐5p inhibitor. Additionally, anti‐PD‐L1 upregulated the expressions of interleukin‐2 (IL‐2), tumor necrosis factor‐α (TNF‐α), and interferon γ (IFN‐γ) in the coculture of T cells with CRC cells, but downregulated the expressions of IL‐1β, IL‐10, and TGF‐β. However, these changes were partially reversed by miR‐93‐5p inhibition. miR‐93‐5p is expected to be a novel target for CRC treatment since it decreases the migration and invasion, as well as the immune evasion, of CRC cells via targeting PD‐L1.     

Permeabilized Escherichia coli Whole Cells Containing Co‐Expressed Two Thermophilic Enzymes Facilitate the Synthesis of scyllo‐Inositol from myo‐Inositol

Scyllo‐inositol (SI), a stereoisomer of inositol, is regarded as a promising therapeutic agent for Alzheimer's disease. Here, an in vitro cofactor‐balance biotransformation for the production of SI from myo‐inositol (MI) by thermophilic myo‐inositol 2‐dehydrogenase (IDH) and scyllo‐inositol 2‐dehydrogenase (SIDH) is presented. These two enzymes (i.e., IDH and SIDH from Geobacillus kaustophilus) are co‐expressed in Escherichia coli BL21(DE3), and E. coli cells containing the two enzymes are permeabilized by heat treatment as whole‐cell catalysts to convert MI to SI. After condition optimizations about permeabilized temperature, reaction temperature, and initial MI concentration, about 82 g L^?1 of SI is produced from 250 g L^?1 of MI within 24 h without any cofactor supplementation. This final titer of SI produced is the highest to the authors’ limited knowledge. This study provides a promising method for the large‐scale industrial production of SI.     

Effect of woody plant expansion on decomposition of fine root mixtures in a grass-dominated temperate wetland

Wetlands Ecology and Management - Little is known about the effect of woody plant expansion on decomposition of root mixtures in grass-dominant temperate wetlands. Here, we collected fine roots...     

A comparison of diversity estimators applied to a database of host–parasite associations

Understanding the drivers of biodiversity is important for forecasting changes in the distribution of life on earth. However, most studies of biodiversity are limited by uneven sampling effort, with some regions or taxa better sampled than others. Numerous methods have been developed to account for differences in sampling effort, but most methods were developed for systematic surveys in which all study units are sampled using the same design and assemblages are sampled randomly. Databases compiled from multiple sources, such as from the literature, often violate these assumptions because they are composed of studies that vary widely in their goals and methods. Here, we compared the performance of several popular methods for estimating parasite diversity based on a large and widely used parasite database, the Global Mammal Parasite Database (GMPD). We created artificial datasets of host–parasite interactions based on the structure of the GMPD, then used these datasets to evaluate which methods best control for differential sampling effort. We evaluated the precision and bias of seven methods, including species accumulation and nonparametric diversity estimators, compared to analyzing the raw data without controlling for sampling variation. We find that nonparametric estimators, and particularly the Chao2 and second-order jackknife estimators, perform better than other methods. However, these estimators still perform poorly relative to systematic sampling, and effect sizes should be interpreted with caution because they tend to be lower than actual effect sizes. Overall, these estimators are more effective in comparative studies than for producing true estimates of diversity. We make recommendations for future sampling strategies and statistical methods that would improve estimates of global parasite diversity.     

中国黄土高原北部地区新石器-青铜时代农业结构演变及其对区域生态环境的适应

本文分析并测定了从15个位于黄土高原北部的遗址中浮选的炭化植物遗存的年代及数量,讨论了该地区新石器-青铜时代农业结构的变化、发展及自适应。研究表明,该地区粟的占比随着遗址年代的推移呈现出上升趋势,证明了先民的农业技术随时间变化而发展;受季风降水特征影响,东南部灌丛草原区粟的占比随时间变化上升趋势明显,西北部干草原区则变化较弱,证明环境的差异也造成了农业模式的不同;在干旱气候条件限制下,自中全新世以来黄土高原北部地区的主要作物始终为粟和黍,粟作农业奠定了黄土高原乃至中国北方的文明基础。     

岷江上游4个栽培树种细根功能性状垂直分布的差异性

细根(直径≤2 mm)功能性状及垂直分布格局是反映植物对土壤资源吸收策略和影响森林地下生态过程的关键。本研究以岷江上游4个人工林树种连香树(Cercidiphyllum japonicum)、白桦(Betula platyphylla)、华山松(Pinus armandii)和油松(P.tabuliformis)为对象,调查不同海拔树木细根功能性状及其在不同土层间的垂直分布格局,并分析细根功能性状分布与构型之间的相关关系。结果表明:阔叶树种比针叶树种有更大的根长密度、生物量、比根长和比表面积,而直径反之;4个树种细根集中在0~20 cm土层,根长密度和生物量在较高海拔地段均显著大于较低海拔,且均随土壤深度增加而减少,但比根长、比表面积和直径无显著的海拔差异,随土层加深也无明显的垂直变化规律;针阔树种间的细根构型差异显著,但不受海拔差异的影响,阔叶树的细根分支强度与一级根数量显著大于针叶树种;一级根数和根尖密度与比根长以及分根比与根长密度和生物量均呈显著正相关,而分叉与几个细根功能参数均呈负相关;随着土层深度增加,细根总生长量明显减少,但细根资源利用效率和策略不变;5个细根功能性状的垂直分布格局差异明显,且受树种特性影响显著,细根分支构型对其垂直分布及资源获取策略具有显著影响。     

敦煌阳关湿地芦苇叶片养分重吸收模式及其对土壤水分的响应

植物叶片的养分重吸收是养分贫瘠生境中植物重要的养分保存机制。研究叶片养分重吸收对土壤水分的响应,有助于了解植物对环境的适应策略。以敦煌阳关湿地优势植物芦苇为对象,研究不同水分条件[高: 33.5%±1.9%、中: 26.4%±1.3%、低: 11.3%±1.5%]下芦苇叶片氮磷重吸收模式及其对土壤水分的响应。结果表明: 1)随着土壤水分下降,土壤N浓度显著降低,芦苇成熟叶片及衰老叶片N浓度显著升高,成熟叶片和衰老叶片P浓度及土壤P浓度均无显著变化。2)高水分条件叶片N重吸收效率为 76.1%,显著高于中(65.5%)、低(62.5%)水分条件;不同水分条件叶片P重吸收效率无显著差异。3)成熟叶片和衰老叶片N浓度与叶片N重吸收效率呈极显著负相关;成熟叶片P浓度与叶片P重吸收效率无显著相关性,而衰老叶片P浓度与叶片P重吸收效率呈极显著负相关。说明土壤水分缺乏不利于叶片N重吸收。     

干旱河谷微生境变化对乡土植物幼苗定植的影响

干旱区植被斑块状分布格局引起的微生境差异对植被更新影响显著。气候变化和人类活动扰动下, 干旱区生态系统微生境多样化, 急需揭示乡土植物定植对不同微生境斑块变化的响应及其种间差异性, 并采用微生境调控技术促进退化生态系统植被恢复。该研究选择岷江干旱河谷区自然分布的灌木、半灌木和裸地微生境斑块, 采用移栽鞍叶羊蹄甲(Bauhinia brachycarpa)幼苗的试验方法, 揭示微生境变化对幼苗定植的影响; 进一步以极端退化的道路边坡为案例, 通过6种乡土植物种子直播试验探讨微生境调控技术及其对乡土植物幼苗定植的促进作用。结果显示, 在自然生态系统中, 裸地斑块上幼苗保存率和生物量显著大于植被斑块, 表明裸地微生境有利于幼苗定植; 养分添加仅对裸地斑块中幼苗生物量积累有促进作用。在裸地斑块中, 叶片生物量所占的比例和比叶面积较小, 相反根和茎生物量所占的比例较大。道路边坡上植被恢复试验结果显示, 6种乡土植物均能较好地适应土石混杂的边坡生境, 多数物种出苗率大于60%; 灌木幼苗保存率大于75%, 并且形成镶嵌式乡土灌草群落结构。地表覆盖和养分添加提高了边坡上种子出苗率和幼苗保存率, 促进了幼苗定植和结构稳定。该研究提供了有效促进工程边坡上乡土植物定植的方法, 可为干旱、半干旱生态系统退化荒坡和工程破坏地乡土植被恢复提供理论依据和技术指导。