Small mammal diversity and dynamics within Nigeria,with emphasis on reservoirs of the lassa virus

Nigeria has a rich small mammal community, with several species implicated as carriers of zoonotic microbes such as the Lassa virus (LASV). We sought to elucidate the diversity and distribution of these animals (including known LASV reservoirs) geographically, habitat-wise and seasonally. Our DNA-assisted survey detected at least 19 small mammal species amongst 790 specimens. Diversity indices were similar between ecological zones and also between endemic and non-endemic areas for Lassa fever. Mastomys natalensis, the most renowned LASV host, was present in eight out of nine localities sampled. We also described the spatial occurrence of other known LASV hosts such as M. erythroleucus and Hylomyscus pamfi, including carriers of LASV-like arenaviruses such as Mus (Nannomys) spp. The most numerous rodents (Mastomys natalensis, M. erythroleucus, and Praomys daltoni) were captured mainly inside human dwellings. Reproductive activity occurred throughout the year, but led to population peaks for M. natalensis in the dry season and for M. erythroleucus and P. daltoni in the rainy season. Extensive geographic distribution of LASV rodent reservoirs, with population peaks in different seasons, shows that the risk of rodent-to-human transmission of LASV is greater than currently realized.     

New polymorphic microsatellite loci for rodents of the genus Mastomys using PCR multiplexing,and cross‐species amplification in Myomys and Praomys

The Praomys complex contains some of the most important agricultural pests of Africa, including Mastomys species. We describe the development of nine supplementary microsatellite markers isolated from Mastomys huberti. We show the potential utility of M. huberti microsatellites as population markers for two other species of Mastomys, and two other species of the Praomys complex, Myomys daltoni and Praomys cf. rostratus.     

Ecology of a typical West African Sudanian savannah rodent community

The small‐mammal community of a typical Sudanian savannah area of south‐eastern Senegal was studied by way of intensive sampling at the beginning (July) and at the end (November) of the rainy season. A total of 5931 trapnights and 200 pitfallnights yielded 767 small mammals, including 757 rodents of 12 species, as well as a few shrews and hedgehogs. Accumulation curve indicated that the rodent community was well sampled. Murine rodents were far more numerous than gerbilline rodents, and among them, Mastomys erythroleucus was the dominant species, being caught in high numbers in all habitats. Arvicanthis niloticus and Praomys daltoni were also abundant, followed by Mastomys natalensis and Gerbilliscus guineae. Abundances were high at the beginning of the rainy season when reproductive activity was low in all species. At the end of the rainy season, murine rodents were actively involved in reproduction, while gerbilline rodents were at their lowest density. Significant changes in relative abundance among habitats (including human dwellings) were observed between periods in some species, suggesting seasonal trends in habitat preferences. This may help species coexistence in this species‐rich rodent community, in an area likely to be submitted to significant habitat alterations in the years to come.     

Guinean biodiversity at the edge: Rodents in forest patches of southern Mali

Southern Mali mainly belongs to the Sudanian savanna bioclimatic zone, but forest patches showing botanical affinities with Guinean humid forest remain as gallery forests or ravine forests. To characterize the rodent diversity of this area and check for the presence of some species of Guinean affinities in this group, rodent assemblages were sampled in four regions of southern Mali, using trapping and observational data in forest and surrounding habitats. Twenty-four species were recorded, comprising a representative sample of the expected overall diversity in this group according to rarefaction curves. Praomys rostratus was the dominant species in the most humid, closed lowland forest. Praomys daltoni was also present in this habitat type, being all the more abundant as habitat degradation was apparent. It became the dominant species in ravine forest on rocky substrate where P. rostratus was completely absent. In Sudanian savanna habitats and in herbaceous and cultivated areas, Mastomys erythroleucus dominated a diverse rodent community. A few species were found that testified for Guinean affinities of the most humid forest patches, especially in the extreme southeast of the country (region of Sikasso). Rodent assemblages of the Bafing and Mts Mandingues areas, in the western part of the study area, showed the highest similarity, in relation with environmental characteristics of this region representing an extension of the Fouta Djallon plateau in Guinea. The results obtained highlight the high biodiversity value of this forest-savanna mosaic, and provide new arguments in favour of the preservation of West African forest patches and their surrounding habitats.     

Distribution of small rodents and shrews in a lowland rain forest zone of Nigeria, with observations on their reproductive biology

This paper describes the habitat preferences of small rodents and shrews from April 1984 to March 1985 in four types of vegetation in a lowland rain forest zone of Nigeria. The vegetation types were high forest, scrub, farmlands and teak plantations in Ogba Forest Reserve, Nigeria. A collection of 359 small mammals, consisting of six species of small rodents and four species of shrews, was made in the study area. The small rodents and their percentage composition were Mus musculoides (26.2%), Praomys tullbergi (16.2%), Mastomys natalensis (7.0%), Lophuromys sikapusi (4.5%), Lemniscomys striatus (2.5%), and Arvicanthis niloticus (1.1%). The shrews were Crocidura nigeriae (19.5%), C. crossei (12.3%), C.grandiceps (7.8%) and C. ftavescens manni (3.1%). The vegetational distribution of the small rodents and shrews is discussed. In the high forest, seven species of small mammals were caught; these were Crocidura nigeriae, C. crossei, C.grandiceps, C.flavescens manni, Mus musculoides, Praomys tullbergi and Lophuromys sikapusi. Mus musculoides, Crocidura nigeriae and Praomys tullbergi were more abundant in the high forest. All the species of small mammals recorded in the study area, except Arvicanthis niloticus, were found in the scrub. In the farmlands, all ten species of small mammals were trapped. Mus musculoides was the commonest species in the farmlands. Three species of shrews, Crocidura crossei, C. grandiceps and C.flavescens manni, and also two species of small rodents, Mus musculoides and Mastomys natalensis were caught in the teak plantation. The reproductive data for Mus musculoides, Crocidura nigeriae and Praomys tullbergi show that breeding in these species occurs throughout most months of the year. Fecundity appears to be maximal in the wet season in Mus musculoides and Crocidura nigeriae and in the dry season in the case of Praomys tullbergi.     

Indications of higher diversity and abundance of small rodents in human‐influenced Sudanian savannah than in the Niokolo Koba National Park (Senegal)

Expansion of human activities in the Sudanian savannah is changing natural habitats together with their animal communities. The abundance and diversity of small mammal communities were investigated in human‐influenced savannahs in close proximity to Niokolo Koba National Park (NKNP) in south‐eastern Senegal and compared with those from NKNP. Two localities were sampled in natural and two in human‐influenced areas during two dry and two rainy seasons. Total sampling effort was 5400 trap‐nights. Ninety‐eight individuals of eleven species were captured outside NKNP, while only 28 individuals of five rodent species were caught inside the park (all of which were found also outside NKNP). The most abundant species outside NKNP was Mastomys erythroleucus, while inside NKNP it was Praomys daltoni. Both relative abundance and diversity were significantly higher in human‐influenced landscape than in natural savannahs of NKNP. The difference in species richness may be linked with lower population densities of certain species in NKNP and the effect of traditional agriculture, which may support the presence of species typical for deforested landscape. Furthermore, food availability, and predator abundances are discussed as possible reasons for the higher rodent abundances outside NKNP.     

Host habitat patchiness and the distance decay of similarity among gastro-intestinal nematode communities in two species of <Emphasis Type="Italic">Mastomys</Emphasis> (southeastern Senegal)

Beta-diversity, or how species composition changes with geographical distance, has seldom been studied for different habitats. We present here quantitative estimates of the relationship between geographic distance and similarity of parasitic nematode communities in two closely related rodent host species that live in habitats with very different spatial configurations. In southeastern Senegal Mastomys natalensis lives exclusively inside human villages whereas M. erythroleucus is continuously distributed outside villages. Both host species and their gastro-intestinal nematodes were sampled on the same spatial scale. Beta-diversity was found to be higher in parasite communities of M. erythroleucus than in those of M. natalensis, and significantly related to geographic distance in this first species. Even on the local spatial scale studied, host dispersal limitation, and stochastic events, may affect species turnover in nematode communities of M. erythroleucus. In M. natalensis, no relationship was found between geographic distance and nematode community similarity, however, suggesting low host dispersal rates between habitat patches. Together with previous population genetic results, this study illustrates the need for different approaches with regard to dispersal in natural populations and its effect on biodiversity.     

Species diversity and abundance of small mammals in Nechisar National Park,Ethiopia

Species diversity and abundance of small mammals were studied in Nechisar National Park, Ethiopia, during August 2008 – March 2009. Twenty species of rodents and four species of insectivores were recorded from the study area. Mastomys natalensis (17.37%), Arvicanthis dembeensis (17.09%), Mastomys erythroleucus (8.90%), Stenocephalemys albipes (8.76%), Arvicanthis niloticus (8.19%), Acomys cahirinus (7.34%), Lemniscomys striatus (6.92%), Gerbilliscus nigricauda (6.21%), Grammomys dolichurus (3.67%), Gerbilliscus robusta (2.12%), Mus proconodon (1.98%), Mus mahomet (1.41), Dendromus melanotis (1.27%), Arvicanthis abyssinicus (1.13%), Mus musculus (0.99%), Praomys fumatus (0.85%), Xerus erythropus (0.85%), Lemniscomys barbarus (0.71%), Mus tenellus (0.71%) and Otomys typus (0.28%) were the rodents and their respective relative abundance in the study area. Crocidura olivieri (1.55%), Crocidura fumosa (0.85%), Crocidura bicolor (0.57%) and Elephantulus rufescens (0.28%) were the insectivores recorded with their respective relative abundance. Mastomys natalensis was the most abundant and O. typus and E. rufescens were the least (two each). Diversity of small mammals ranged from 2.299 to 2.625 with an average of 2.412. The highest small mammal diversity was in grasslands and the lowest was in Lake Chamo shore. Small mammal density varied from 5 to 43 ha^?1 and biomass varied from 244 to 2559 g ha^?1 with significant changes in relation to seasons and habitats.     

Microhabitat choice and diet of rodents in Maynugus irrigation field, northern Ethiopia

An ecological study on the choice of microhabitat and diet of small mammals was carried out in Maynugus irrigation field of the Tigray region in northern Ethiopia. Abundance of rodents was high during the reproductive phase of the agricultural plants. Mastomys erythroleucus occurred more frequently in vegetable fields, whereas Arvicanthis dembeensis was more frequent in habitats with monocot plants. Scrotal males and reproductive females consumed more food by weight than abdominal males and quiescent females. Arvicanthis dembeensis consumed more food than M. erythroleucus. Both the species consumed more food during the main rainy season. All the cultivated plants were attacked by these rodents with a degree of difference in relation to season, species, sex, age and sexual condition. As rodent attack was more intense during the fruiting phase of the plants, rodent control management should be carried out during the flowering phase.     

Changes in a Sudano-Sahelian rodent community after slash-and-burn farming (Gonsé Forest, Burkina Faso)

This study describes the recolonization by a Sudano‐Sahelian rodent community of an area slashed and burned in the middle of the dry season (Gonsé Forest in Burkina Faso). A series of abundance cycles occurred. The first began with the wet season and the arrival of a succession of four species: Taterillus gracilis, Tatera guineae, Nannomys sp. and Mastomys erythroleucus. Taterillus gracilis appeared to be the least demanding species. It was sexually active whatever the season and took advantage of reduced competition among species on the burned tracts. Tatera guineae also extended its spatial distribution but failed to reproduce. Nannomys sp. rapidly increased after the first rains. Although generally held to be the most prolific and opportunistic of the species involved, M. erythroleucus only found conditions amenable to its colonization late on. The timing of the disruption and whether or not it coincides with the reproductive period and the mobility phase of each species are decisive factors. This information is useful for a clearer understanding of the dynamics of each species and for evaluating the risk and probable locations of outbreaks of certain species.     

Contemporary variations of immune responsiveness during range expansion of two invasive rodents in Senegal

Biological invasions provide unique opportunities for studying life history trait changes over contemporary time scales. As spatial spread may be related to changes in parasite communities, several hypotheses (such as the evolution of increased competitive ability (EICA) or EICA‐refined hypotheses) suggest immune changes in invasive species along invasion gradients. Although native hosts may be subject to similar changes in parasite selection pressures, their immune responses have been rarely investigated in invasion contexts. In this study, we evaluated immune variations for invasive house mice Mus musculus domesticus, invasive black rats Rattus rattus and native rodents Mastomys erythroleucus and Mastomys natalensis along well‐characterised invasion gradients in Senegal. We focused on antibody‐mediated (natural antibodies and complement) and inflammatory (haptoglobin) responses. One invasion route was considered for each invasive species, and environmental conditions were recorded. Natural‐antibody mediated responses increased between sites of long‐established invasion and recently invaded sites only in house mice. Both invasive species exhibited higher inflammatory responses at the invasion front than in sites of long‐established invasion. The immune responses of native species did not change with the presence of invasive species. These patterns of immune variations do not support the EICA and EICA refined hypotheses, and they rather suggest a higher risk of exposure to parasites on the invasion front. Altogether, these results provide a first basis to further assess the role of immune changes in invasion success.     

Species composition,abundance and habitat association of non-volant small mammals in Gibe Sheleko National Park,southwestern Ethiopia

The objective of this study was to assess the species composition, abundance and habitat association of non-volant small mammals from grassland, Acacia woodland, farmland, riverine forest, bushland and wooded grassland habitats in Gibe Sheleko National Park, southwestern Ethiopia. Data were collected using 49 Sherman live traps in 70 × 70 m sized girds and visual observations from December 2018 to August 2020. A total of 937 small mammals belonging to 10 species were captured and directly identified. The identified small mammal species and their relative abundance include Arvicanthis niloticus (7.04%), Crocidura olivieri (1.92%), Grammomys dolichurus (3.84%), Lemniscomys striatus (10.25%), Mastomys awashensis (24.55%), Mastomys natalensis (33.83%), Mus tenellus (0.85%), Myomys fumatus (6.30%), Rattus rattus (4.70%) and Stenocephalemys albipes (6.72%). Hystrix cristata, Xerus rutilus and Tachyoryctes splendens were documented through observation. The highest number of species (6) was registered at farmland and wooded grassland followed by bushland and riverine forest (5) and Acacia woodland and grassland (4). Lemniscomys striatus, M. awashensis and M. natalensis were common in all habitats. More, 216 (23.05%) individuals were recorded in farmland, while the least, 111 (11.85%) were recorded in Acacia woodland. The study area has various topographical land settings additional study is needed using different traps.     

A multiplex panel of microsatellite markers for widespread sub‐Saharan rodents of the genus Mastomys

We isolated and characterized 12 polymorphic microsatellite loci in the sub‐Saharan rodent Mastomys huberti. We tested cross‐species amplification of all these loci in three closely related Mastomys species: M. coucha, M. erythroleucus and M. natalensis. Multiplex panels comprising 11 loci were developed and their application to a set of individuals in each species allowed clear and easy characterization of allele sizes. Statistics from 31 M. huberti coming from one locality in Mali showed no deviation from Hardy–Weinberg equilibrium except for one locus, and no significant linkage disequilibria between loci.     

Diversity of parasites in Cichlasoma amazonarum Kullander, 1983 during rainy and dry seasons in eastern Amazon (Brazil)

This study investigated the influence of the rainy and dry seasons on the parasite communities of Cichlasoma amazonarum (Kullander, 1983) in a tributary of the Amazon River system, northern Brazil. Of 112 fish examined, 95.5% were parasitized by Ichthyophthirius multifiliis, Piscinoodinium pillulare, Gussevia disparoides, Posthodiplostomum sp., Procamallanus (Spirocamallanus) inopinatus, and Echinorhynchus paranensis, as well as by the Glossiphoniidae leech. Ichthyophthirius multifiliis and P. pillulare were the dominant parasite species, with I. multifiliis the most prevalent and abundant; the leech (Glossiphoniidae) was the least prevalent and least abundant. Parasites presented an aggregate dispersion pattern and seasonal variations in infestation levels, influenced by the environmental conditions in the rainy season. Variation in the parasite dynamics created overall changes in the parasite communities, characterized by greater diversity, species richness and evenness during the rainy season. However, there was a high similarity (99.8%) in the parasite community structure between the rainy and dry seasons. During the dry season the hosts had predominantly 1–3 parasite species compared to 3–4 parasites in the rainy season. Some parasites in the eastern Amazon undergo population changes relating to seasonality. These results thus indicate the correct season to apply adequate prophylactic measures to reduce negative impacts of parasites in this wild ornamental fish when captured.     

Comparative phylogeography of two sibling species of forest‐dwelling rodent (Praomys rostratus and P. tullbergi) in West Africa: different reactions to past forest fragmentation

Two sibling species of the rodent genus Praomys occur in West African forests: P. tullbergi and P. rostratus. By sampling across their geographical ranges (459 individuals from 77 localities), we test the hypothesis that climatic oscillations during the Quaternary made an impact on the observed pattern of cytochrome b sequence variation. We show that, although these two species have parapatric geographical distributions, their phylogeographical histories are dissimilar, which could be related to their distinct ecological requirements. Since the arid phases of the Pleistocene were characterized by isolated forest patches, and intervening wetter periods by forest expansion, these changes in forest cover may be the common mechanism responsible for the observed phylogeographical patterns in both of these species. For example, in both species, most clades had either allopatric or parapatric geographical distributions; however, genetic diversity was much lower in P. tullbergi than in P. rostratus. The genetic pattern of P. tullbergi fits the refuge hypothesis, indicating that a very small number of populations survived in distinct forest blocks during the arid phases, then expanded again with forest recovery. In contrast, a number of populations of P. rostratus appear to have survived during the dry periods in more fragmented forest habitats, with varying levels of gene flow between these patches depending on climatic conditions and forest extent. In addition, historical variations of the West African hydrographic network could also have contributed to the pattern of genetic differentiation observed in both species.     

Community ecology of the terrestrial small mammals of Zakouma National Park,Chad

The terrestrial small mammal community of the Zakouma National Park (Chad) was assessed by live trapping in various habitats during the dry season. Nearly 3000 trap-nights yielded 505 captures of nine rodent and two shrew species, making up a representative small mammal community for the Sudanian savanna biotic zone. Murine rodents of the genusMastomys dominated, withM. erythroleucus andM. cf.kollmannspergeri occuring at similar abundances. The former was widespread and especially abundant in habitats with high tree cover. The latter was more localized, predominantly in annually flooded habitats characterized by a clay-rich soil, often withAcacia seyal as the main vegetation. Population structure differed between the two species, suggesting distinct reproductive strategies possibly linked with habitat preferences: theM. erythroleucus population comprised mainly young, immature individuals, whereasM. cf.kollmannspergeri was represented by older individuals, a significant fraction of which had already reproduced.Taterillus congicus andTatera kempi (gerbilline rodents), together withLemniscomys zebra, were mainly found in more open habitats with sand-rich soils.Arvicanthis niloticus, Acomys cf.johannis, Mus mattheyi andXerus erythropus were the other rodents captured, whereas shrews were represented byCrocidura fulvastra andSuncus sp.     

Species composition,relative abundance and habitat association of small mammals along the altitudinal gradient of Jiren Mountain,Jimma, Ethiopia

To document the species composition, relative abundance and habitat association of small mammals, wet and dry season surveys were conducted along the altitudinal gradient of Jiren Mountain, Jimma area, Ethiopia. Sherman traps were used to capture small mammals from the six habitats: wetland, mixed plantation, open shrub, eucalyptus plantation, montane grassland and coffee plantation. The 393 trap nights, from the six habitat types, yielded 106 individual small mammals of tweleve species. The trapped rodents were Lophuromys flavopunctatus, Stenocephalemys albipes, Desmomys harringtoni, Mus mahomet, Lemniscomys barbarous, L. striatus, Tachyoryctes splendens, Mastomys natalensis and the insectivores Crocidura fumosa and C. turba. Two species of rodents Hystrix cristata and Helioscuirus gambianus were observed. Lophuromys flavopunctatus and S. albipes contributed 83.8% of the total capture. L. flavopunctatus, S. albipes and D. harringtoni were distributed in all habitats and gradients. T. splendens was captured from montane habitat, while the zebra mice were associated with the lower altitude habitats. Lophuromys flavopunctatus and M. natalensis extended their range deep into the coffee plantation habitats. Uncontrolled vegetation exploitation of the mountains for timber production and fire wood collection are the major threats. Conservation of the area to reduce the anthropogenic pressure is essential.     

Species assemblages of cyclopoid Copepoda from Mantecal,Venezuela

A 14 year monitoring of species composition and abundance of cyclopoid copepods throughout the rainy and dry seasons in a flooded savanna at Mantecal, Apure State, Venezuela, is presented. Two characteristic habitats within these water bodies were selected: the open center of small ponds free of emergent vegetation and the surrounding flooded grassland. In total, 13 species were registered, all of which appeared in the flooded grassland and 11 of which occurred in the open water. Ten species were common for the two habitats during the dry season. The highest abundance was found in flooded grassland during the dry season. Eight species showed abundances greater than 1.0 individual per liter in flooded grassland during both seasons; 3 and 7 species were this abundant in the open water during rainy and dry seasons, respectively. Mesocyclops meridianus and Microcyclops varicans were the most abundant species in both habitats and seasons, while Thermocyclops decipiens was the dominant species during rainy season in open water. Principal component analysis indicates that the important species were positively correlated between them (sharing habitat and season).     

Structures génétiques comparées de trois espèces de rongeurs africains du genre Mastomys au Sénégal

Résumé Une analyse par électrophorèse des protéines à 20 locus a été réalisée sur trois espèces du genre Mastomys au Sénégal. Malgré l'absence de locus diagnostique, une approche multivariée par analyses factorielles (AFC et AFD) permet néanmoins de reconnaître de façon sûre une des espèces en présence (M. cf. natalensis, 100% d'individus bien classés par l'AFD) et d'attribuer correctement les individus des deux autres espèces (M. erythroleucus et M. huberti) dans 92% et 77% des cas respectivement. Bien qu'écologiquement nettement différenciées, ces deux dernières espèces apparaissent très proches génétiquement (D_Nei=0,12) et montrent par ailleurs de hétérozygoties très elevées. Les faibles distances génétiques entre les trois espèces contrastent avec la forte différenciation chromosomique observée par ailleurs. Chez M. erythroleucus et M. huberti, les distances génétiques observées entre populations continentales ne sont pas corrélées avec les distances géographiques alors que les populations insulaires présentent une nette baisse de variabilité, en relation probable avec leur isolement géographique important. Par ailleurs, chez M. huberti, plusieurs populations s'écartent fortement de la panmixie. Ces tensions génétiques pourraient résulter de phénomènes d'introgression avec M. erythroleucus.

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Compared genetic structures of three species of African rodents of the genus Mastomys from Senegal. A protein electrophoresis analysis at 20 loci was performed on three species of the genus Mastomys from Senegal. Although no diagnostic locus was found between the three species, they can be readily recognized by multivariate analysis (100% of the M. cf. natalensis, 92% of the M. erythroleucus and 77% of the M. huberti individuals could be correctly classified by discriminant analysis). Although ecologically quite clearly differentiated, M. erythroleucus and M. huberti were found to be genetically very close (D_Nei=0.12) and display very high heterozygosities. On the whole, the small genetic distances between the three species contrast with the high chromosomal differentiation that has been reported in another study. In M. erythroleucus and M. huberti, genetic distances between mainland populations are not correlated with geographic distances, whereas insular populations show an important decrease of variability probably linked with their geographic isolation. In M. huberti, some populations show a strong departure from panmictic equilibrium: these genetical tensions could result from introgression phenomena with M. erythroleucus.

     

Abundance of arbuscular mycorrhizal fungi spores in different environments in a tropical rain forest, Veracruz, Mexico

 The aim of this study was to compare mycorrhizal abundance and diversity in sites with different regimes of disturbance in a tropical rain forest at Los Tuxtlas, Veracruz, Mexico. Arbuscular mycorrhizal spores were quantified at two sites: closed canopy and gaps in the forest. Data were recorded during dry, rainy, and windy ("nortes") seasons. Spores of eight Glomus species, sporocarps of three Sclerocystis species, three species of Acaulospora and two of Gigaspora were found. Significant differences in the number of species and spores were found among seasons. The highest numbers of species and spores were observed during the dry season, with a marked decrease during the rainy season. Our results show that disturbance does not but seasonality does affect abundance and richness of mycorrhizal spores in this tropical wet forest. Accepted: 11 October 1998